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Search of human proteins with 62988357
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|62988357 lipocalin 8 [Homo sapiens]
(152 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|62988357 lipocalin 8 [Homo sapiens] 306 3e-84
gi|42714611 lipocalin 15 [Homo sapiens] 36 0.011
gi|32171249 prostaglandin H2 D-isomerase [Homo sapiens] 33 0.094
gi|4504963 lipocalin 1 precursor [Homo sapiens] 33 0.094
gi|169177936 PREDICTED: similar to hCG1795014 [Homo sapiens] 31 0.46
gi|169179152 PREDICTED: similar to hCG1795014 [Homo sapiens] 31 0.46
gi|169181274 PREDICTED: similar to hCG1795014 [Homo sapiens] 31 0.46
gi|145580608 WD repeat domain 62 isoform 1 [Homo sapiens] 28 2.3
gi|145580610 WD repeat domain 62 isoform 2 [Homo sapiens] 28 2.3
gi|7657405 odorant binding protein 2A precursor [Homo sapiens] 28 3.0
>gi|62988357 lipocalin 8 [Homo sapiens]
Length = 152
Score = 306 bits (785), Expect = 3e-84
Identities = 152/152 (100%), Positives = 152/152 (100%)
Query: 1 MEELDRQKIGGFWREVGVASDQSLVLTAPKRVEGLFLTLSGSNLTVKVAYNSSGSCEIEK 60
MEELDRQKIGGFWREVGVASDQSLVLTAPKRVEGLFLTLSGSNLTVKVAYNSSGSCEIEK
Sbjct: 1 MEELDRQKIGGFWREVGVASDQSLVLTAPKRVEGLFLTLSGSNLTVKVAYNSSGSCEIEK 60
Query: 61 IVGSEIDSTGKFAFPGHREIHVLDTDYEGYAILRVSLMWRGRNFRVLKYFTRSLEDKDRL 120
IVGSEIDSTGKFAFPGHREIHVLDTDYEGYAILRVSLMWRGRNFRVLKYFTRSLEDKDRL
Sbjct: 61 IVGSEIDSTGKFAFPGHREIHVLDTDYEGYAILRVSLMWRGRNFRVLKYFTRSLEDKDRL 120
Query: 121 GFWKFRELTADTGLYLAARPGRCAELLKEELI 152
GFWKFRELTADTGLYLAARPGRCAELLKEELI
Sbjct: 121 GFWKFRELTADTGLYLAARPGRCAELLKEELI 152
>gi|42714611 lipocalin 15 [Homo sapiens]
Length = 184
Score = 36.2 bits (82), Expect = 0.011
Identities = 28/137 (20%), Positives = 58/137 (42%), Gaps = 6/137 (4%)
Query: 3 ELDRQKIGGFWREVGVASDQSLVLTAPKRVEGLFLTLSGSN---LTVKVAYNSSGSCEIE 59
+ + +K G W V +ASD + L + + + L V + + + C
Sbjct: 27 DFNAEKFSGLWYVVSMASDCRVFLGKKDHLSMSTRAIRPTEEGGLHVHMEFPGADGCNQV 86
Query: 60 KIVGSEIDSTGKFAFP--GHREIHVLDTDYEGYAILRVSLMWRGRNFRVLKYFTRSLEDK 117
++ S G F P G+ ++ ++DTDY +A+L + G +++ ++R+ +D
Sbjct: 87 DAEYLKVGSEGHFRVPALGYLDVRIVDTDYSSFAVLYIYKELEGALSTMVQLYSRT-QDV 145
Query: 118 DRLGFWKFRELTADTGL 134
F++ GL
Sbjct: 146 SPQALKSFQDFYPTLGL 162
>gi|32171249 prostaglandin H2 D-isomerase [Homo sapiens]
Length = 190
Score = 33.1 bits (74), Expect = 0.094
Identities = 31/145 (21%), Positives = 59/145 (40%), Gaps = 14/145 (9%)
Query: 6 RQKIGGFWREVGVASDQSLVL---TAPKRVEGLFLTLSGSNLTVKVAYNSSGSCEIEKIV 62
+ K G W G+AS+ S + A + + + L + + CE ++
Sbjct: 36 QDKFLGRWFSAGLASNSSWLREKKAALSMCKSVVAPATDGGLNLTSTFLRKNQCETRTML 95
Query: 63 GSEIDSTGKFAFPGHR-----EIHVLDTDYEGYAIL-RVSLMWRGRNFRVLKYFTRSLED 116
S G +++ + V++TDY+ YA+L G +FR+ ++R+
Sbjct: 96 LQPAGSLGSYSYRSPHWGSTYSVSVVETDYDQYALLYSQGSKGPGEDFRMATLYSRTQTP 155
Query: 117 KDRL-----GFWKFRELTADTGLYL 136
+ L F K + T DT ++L
Sbjct: 156 RAELKEKFTAFCKAQGFTEDTIVFL 180
>gi|4504963 lipocalin 1 precursor [Homo sapiens]
Length = 176
Score = 33.1 bits (74), Expect = 0.094
Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 1/75 (1%)
Query: 7 QKIGGFWREVGVASDQSLVLTAPKRVEGLFLT-LSGSNLTVKVAYNSSGSCEIEKIVGSE 65
Q + G W + D+ + V + LT L G NL KV SG C+ K V +
Sbjct: 29 QDVSGTWYLKAMTVDREFPEMNLESVTPMTLTTLEGGNLEAKVTMLISGRCQEVKAVLEK 88
Query: 66 IDSTGKFAFPGHREI 80
D GK+ G + +
Sbjct: 89 TDEPGKYTADGGKHV 103
>gi|169177936 PREDICTED: similar to hCG1795014 [Homo sapiens]
Length = 181
Score = 30.8 bits (68), Expect = 0.46
Identities = 31/121 (25%), Positives = 54/121 (44%), Gaps = 9/121 (7%)
Query: 5 DRQKIGGFWREVGVASD--QSLVLTAPKRVEGLFLT-LSGSNLTVKVAYNSSGSCEIEKI 61
D KI G W V +ASD + + RV + L S+LT K+ +G+C +
Sbjct: 29 DLSKISGEWYSVLLASDCREKIEEDGSMRVFVKHIDYLGNSSLTFKL----NGNCTEINL 84
Query: 62 V--GSEIDSTGKFAFPGHREIHVLDTDYEGYAILRVSLMWRGRNFRVLKYFTRSLEDKDR 119
+E ++ + G I +L+TDY+ Y + G F +L+ + R+ + +
Sbjct: 85 ACKPTEKNAICSTDYNGLNVIDILETDYDNYIYFYNKNIKNGETFLMLELYVRTPDVSSQ 144
Query: 120 L 120
L
Sbjct: 145 L 145
>gi|169179152 PREDICTED: similar to hCG1795014 [Homo sapiens]
Length = 181
Score = 30.8 bits (68), Expect = 0.46
Identities = 31/121 (25%), Positives = 54/121 (44%), Gaps = 9/121 (7%)
Query: 5 DRQKIGGFWREVGVASD--QSLVLTAPKRVEGLFLT-LSGSNLTVKVAYNSSGSCEIEKI 61
D KI G W V +ASD + + RV + L S+LT K+ +G+C +
Sbjct: 29 DLSKISGEWYSVLLASDCREKIEEDGSMRVFVKHIDYLGNSSLTFKL----NGNCTEINL 84
Query: 62 V--GSEIDSTGKFAFPGHREIHVLDTDYEGYAILRVSLMWRGRNFRVLKYFTRSLEDKDR 119
+E ++ + G I +L+TDY+ Y + G F +L+ + R+ + +
Sbjct: 85 ACKPTEKNAICSTDYNGLNVIDILETDYDNYIYFYNKNIKNGETFLMLELYVRTPDVSSQ 144
Query: 120 L 120
L
Sbjct: 145 L 145
>gi|169181274 PREDICTED: similar to hCG1795014 [Homo sapiens]
Length = 181
Score = 30.8 bits (68), Expect = 0.46
Identities = 31/121 (25%), Positives = 54/121 (44%), Gaps = 9/121 (7%)
Query: 5 DRQKIGGFWREVGVASD--QSLVLTAPKRVEGLFLT-LSGSNLTVKVAYNSSGSCEIEKI 61
D KI G W V +ASD + + RV + L S+LT K+ +G+C +
Sbjct: 29 DLSKISGEWYSVLLASDCREKIEEDGSMRVFVKHIDYLGNSSLTFKL----NGNCTEINL 84
Query: 62 V--GSEIDSTGKFAFPGHREIHVLDTDYEGYAILRVSLMWRGRNFRVLKYFTRSLEDKDR 119
+E ++ + G I +L+TDY+ Y + G F +L+ + R+ + +
Sbjct: 85 ACKPTEKNAICSTDYNGLNVIDILETDYDNYIYFYNKNIKNGETFLMLELYVRTPDVSSQ 144
Query: 120 L 120
L
Sbjct: 145 L 145
>gi|145580608 WD repeat domain 62 isoform 1 [Homo sapiens]
Length = 1523
Score = 28.5 bits (62), Expect = 2.3
Identities = 20/66 (30%), Positives = 29/66 (43%)
Query: 17 GVASDQSLVLTAPKRVEGLFLTLSGSNLTVKVAYNSSGSCEIEKIVGSEIDSTGKFAFPG 76
G D+ +L G FL S S+ ++ V SG C + SEI ++ KF +
Sbjct: 668 GSQGDEGSLLKVHVDPSGTFLATSCSDKSISVIDFYSGECIAKMFGHSEIITSMKFTYDC 727
Query: 77 HREIHV 82
H I V
Sbjct: 728 HHLITV 733
>gi|145580610 WD repeat domain 62 isoform 2 [Homo sapiens]
Length = 1518
Score = 28.5 bits (62), Expect = 2.3
Identities = 20/66 (30%), Positives = 29/66 (43%)
Query: 17 GVASDQSLVLTAPKRVEGLFLTLSGSNLTVKVAYNSSGSCEIEKIVGSEIDSTGKFAFPG 76
G D+ +L G FL S S+ ++ V SG C + SEI ++ KF +
Sbjct: 668 GSQGDEGSLLKVHVDPSGTFLATSCSDKSISVIDFYSGECIAKMFGHSEIITSMKFTYDC 727
Query: 77 HREIHV 82
H I V
Sbjct: 728 HHLITV 733
>gi|7657405 odorant binding protein 2A precursor [Homo sapiens]
Length = 170
Score = 28.1 bits (61), Expect = 3.0
Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Query: 4 LDRQKIGGFWREVGVASDQSLVLTA-PKRVEGLFLT-LSGSNLTVKVAYNSSGSCEIEKI 61
L+ + I G W + D+ P++V + +T L G NL + C +KI
Sbjct: 20 LEEEDITGTWYVKAMVVDKDFPEDRRPRKVSPVKVTALGGGNLEATFTFMREDRCIQKKI 79
Query: 62 VGSEIDSTGKFAFPGHREI 80
+ + + GKF+ G R++
Sbjct: 80 LMRKTEEPGKFSAYGGRKL 98
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.139 0.413
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,463,626
Number of Sequences: 37866
Number of extensions: 204506
Number of successful extensions: 353
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 345
Number of HSP's gapped (non-prelim): 12
length of query: 152
length of database: 18,247,518
effective HSP length: 93
effective length of query: 59
effective length of database: 14,725,980
effective search space: 868832820
effective search space used: 868832820
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.