Search of human proteins with 62632744

Search of human proteins with 62632744

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|62632744 asparagine-linked glycosylation 1-like [Homo
sapiens]
         (187 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|62632744 asparagine-linked glycosylation 1-like [Homo sapiens]     390   e-109
gi|41350216 beta-1,4-mannosyltransferase [Homo sapiens]               263   5e-71
gi|239755575 PREDICTED: similar to mannosyltransferase, partial ...   259   1e-69
gi|209954680 hypothetical protein LOC644974 [Homo sapiens]            175   2e-44
gi|50659093 mannosidase, alpha, class 2B, member 2 [Homo sapiens]      29   2.1  
gi|122937426 RGP1 retrograde golgi transport homolog [Homo sapiens]    29   2.7  
gi|4506067 protein kinase C, alpha [Homo sapiens]                      27   7.9  
gi|19923729 leucine rich repeat containing 8 family, member C [H...    27   7.9  
gi|4759026 RAS protein activator like 1 [Homo sapiens]                 27   7.9  
gi|24119166 retinoblastoma binding protein 9 [Homo sapiens]            27   7.9  

>gi|62632744 asparagine-linked glycosylation 1-like [Homo sapiens]
          Length = 187

 Score =  390 bits (1003), Expect = e-109
 Identities = 187/187 (100%), Positives = 187/187 (100%)

Query: 1   MERSAFMELDAGSRLVMHLREWPALLVSSTGWTEFEQLTLDGHNLPSLVCVITGSVDLGV 60
           MERSAFMELDAGSRLVMHLREWPALLVSSTGWTEFEQLTLDGHNLPSLVCVITGSVDLGV
Sbjct: 1   MERSAFMELDAGSRLVMHLREWPALLVSSTGWTEFEQLTLDGHNLPSLVCVITGSVDLGV 60

Query: 61  CLHMSSSGLDLPMKVVDMFGCCLPVCAVNFKCLHELVKHEENGLVFEDSEELAALQMLFS 120
           CLHMSSSGLDLPMKVVDMFGCCLPVCAVNFKCLHELVKHEENGLVFEDSEELAALQMLFS
Sbjct: 61  CLHMSSSGLDLPMKVVDMFGCCLPVCAVNFKCLHELVKHEENGLVFEDSEELAALQMLFS 120

Query: 121 NFPDPAGKLNQFWKDLRESQQLRWDESWVQTVLPLVMDIQLLGQRLKPRDPCCPSRSFFS 180
           NFPDPAGKLNQFWKDLRESQQLRWDESWVQTVLPLVMDIQLLGQRLKPRDPCCPSRSFFS
Sbjct: 121 NFPDPAGKLNQFWKDLRESQQLRWDESWVQTVLPLVMDIQLLGQRLKPRDPCCPSRSFFS 180

Query: 181 ESQGKPF 187
           ESQGKPF
Sbjct: 181 ESQGKPF 187


>gi|41350216 beta-1,4-mannosyltransferase [Homo sapiens]
          Length = 464

 Score =  263 bits (673), Expect = 5e-71
 Identities = 146/208 (70%), Positives = 147/208 (70%), Gaps = 51/208 (24%)

Query: 2   ERSAFMELDAGSRLVMHLREWPALLVSSTGWTE-------------FEQLTLDGHNLPSL 48
           ERSAF E DAGS LV  LRE PALLVSST WTE             FEQLTLDGHNLPSL
Sbjct: 256 ERSAFTERDAGSGLVTRLRERPALLVSSTSWTEDEDFSILLAALEKFEQLTLDGHNLPSL 315

Query: 49  VCVITG-------------------------------------SVDLGVCLHMSSSGLDL 71
           VCVITG                                     S DLGVCLH SSSGLDL
Sbjct: 316 VCVITGKGPLREYYSRLIHQKHFQHIQVCTPWLEAEDYPLLLGSADLGVCLHTSSSGLDL 375

Query: 72  PMKVVDMFGCCLPVCAVNFKCLHELVKHEENGLVFEDSEELAA-LQMLFSNFPDPAGKLN 130
           PMKVVDMFGCCLPVCAVNFKCLHELVKHEENGLVFEDSEELAA LQMLFSNFPDPAGKLN
Sbjct: 376 PMKVVDMFGCCLPVCAVNFKCLHELVKHEENGLVFEDSEELAAQLQMLFSNFPDPAGKLN 435

Query: 131 QFWKDLRESQQLRWDESWVQTVLPLVMD 158
           QF K+LRESQQLRWDESWVQTVLPLVMD
Sbjct: 436 QFRKNLRESQQLRWDESWVQTVLPLVMD 463


>gi|239755575 PREDICTED: similar to mannosyltransferase, partial
           [Homo sapiens]
          Length = 256

 Score =  259 bits (661), Expect = 1e-69
 Identities = 144/208 (69%), Positives = 147/208 (70%), Gaps = 51/208 (24%)

Query: 2   ERSAFMELDAGSRLVMHLREWPALLVSSTGWTE-------------FEQLTLDGHNLPSL 48
           E SAFME DAGS LVM LRE PALLVSSTGWTE             FEQLT+DGHNLPSL
Sbjct: 48  EPSAFMEWDAGSGLVMLLREQPALLVSSTGWTEDEDFSILLAALEKFEQLTVDGHNLPSL 107

Query: 49  VCVITG-------------------------------------SVDLGVCLHMSSSGLDL 71
           VCVITG                                     SVDLGVCLH SSSGLDL
Sbjct: 108 VCVITGQGPLTEYYSCPIHQKHFQHIQVCNPWLEAEDYPLLLGSVDLGVCLHTSSSGLDL 167

Query: 72  PMKVVDMFGCCLPVCAVNFKCLHELVKHEENGLVFEDSEELAA-LQMLFSNFPDPAGKLN 130
           PMKVVDMFGCCLP CAVNFKCLHELVKHEENGLVFEDSEELAA LQMLFSNFPDPAGKLN
Sbjct: 168 PMKVVDMFGCCLPACAVNFKCLHELVKHEENGLVFEDSEELAAQLQMLFSNFPDPAGKLN 227

Query: 131 QFWKDLRESQQLRWDESWVQTVLPLVMD 158
           QF K+LRESQQLRWDE WVQ+VL LVMD
Sbjct: 228 QFRKNLRESQQLRWDERWVQSVLHLVMD 255


>gi|209954680 hypothetical protein LOC644974 [Homo sapiens]
          Length = 215

 Score =  175 bits (443), Expect = 2e-44
 Identities = 98/157 (62%), Positives = 101/157 (64%), Gaps = 37/157 (23%)

Query: 2   ERSAFMELDAGSRLVMHLREWPALLVSSTGWTEFEQLTLDGHNLPSLVCVITG------- 54
           ERSAF E D+GS LV  L E PALLVSST WTEFEQLTLDG NLPSLVCVITG       
Sbjct: 53  ERSAFTERDSGSGLVTRLHERPALLVSSTSWTEFEQLTLDGQNLPSLVCVITGKGPLREY 112

Query: 55  ------------------------------SVDLGVCLHMSSSGLDLPMKVVDMFGCCLP 84
                                         SVDL VCL  SSSGLDLPMKVVDMF CCLP
Sbjct: 113 YSRLIHQKHFQHIQVCIPWLEGRGLPPLLGSVDLDVCLDTSSSGLDLPMKVVDMFRCCLP 172

Query: 85  VCAVNFKCLHELVKHEENGLVFEDSEELAALQMLFSN 121
            CAVNFKCLHELVKHEEN LVFEDSEELAA    F++
Sbjct: 173 ACAVNFKCLHELVKHEENRLVFEDSEELAAQLQYFAD 209


>gi|50659093 mannosidase, alpha, class 2B, member 2 [Homo sapiens]
          Length = 1009

 Score = 29.3 bits (64), Expect = 2.1
 Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 3/50 (6%)

Query: 103 GLVFEDSEELAALQMLFSNF--PDPAGKLNQFWKDLRESQQLRWDESWVQ 150
           GL    S  L A + +F+ +  P P G L+  W  L++ QQLRW  S VQ
Sbjct: 370 GLARRASALLYAGESMFTRYLWPAPRGHLDPTWA-LQQLQQLRWAVSEVQ 418


>gi|122937426 RGP1 retrograde golgi transport homolog [Homo sapiens]
          Length = 431

 Score = 28.9 bits (63), Expect = 2.7
 Identities = 13/45 (28%), Positives = 22/45 (48%)

Query: 61  CLHMSSSGLDLPMKVVDMFGCCLPVCAVNFKCLHELVKHEENGLV 105
           CLH + +   LP+ +    G C  + ++ ++   E V   E GLV
Sbjct: 333 CLHTTRTSFSLPIPLSSTPGFCTAIVSLKWRLHFEFVTSREPGLV 377


>gi|4506067 protein kinase C, alpha [Homo sapiens]
          Length = 672

 Score = 27.3 bits (59), Expect = 7.9
 Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 1/69 (1%)

Query: 93  LHELVKHEENGLVFEDSEELAALQMLFSNFPDPAGKLNQFWKDLRESQQLRWDESWVQTV 152
           LH  V+  +N L+  D   L+   +     PDP  +  Q  K +R +   +W+ES+   +
Sbjct: 173 LHVTVRDAKN-LIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKL 231

Query: 153 LPLVMDIQL 161
            P   D +L
Sbjct: 232 KPSDKDRRL 240


>gi|19923729 leucine rich repeat containing 8 family, member C [Homo
           sapiens]
          Length = 803

 Score = 27.3 bits (59), Expect = 7.9
 Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 1/76 (1%)

Query: 69  LDLPMKVVDMFGCCLPVCAVNFKCLHELVKHEENGLVFED-SEELAALQMLFSNFPDPAG 127
           L + M ++ +FGC L V      CL + V+  +N     + S+ +A+   L    P PA 
Sbjct: 31  LSVAMLMIGVFGCTLQVMQDKIICLPKRVQPAQNHSSLSNVSQAVASTTPLPPPKPSPAN 90

Query: 128 KLNQFWKDLRESQQLR 143
            +    K L+    L+
Sbjct: 91  PITVEMKGLKTDLDLQ 106


>gi|4759026 RAS protein activator like 1 [Homo sapiens]
          Length = 804

 Score = 27.3 bits (59), Expect = 7.9
 Identities = 25/89 (28%), Positives = 38/89 (42%), Gaps = 4/89 (4%)

Query: 75  VVDMFGCCLPVCAVNFKCLHELVKHEENGLVFEDSEELAALQMLFSNFPDPAGKLNQFWK 134
           +V   G C P   + FK LH  V+        +D + LA    LF  F  PA    + + 
Sbjct: 426 IVGSVGRCPPAMRLAFKQLHRRVEERFPQAEHQDVKYLAISGFLFLRFFAPAILTPKLF- 484

Query: 135 DLRESQQLRWDESWVQTVLPLVMDIQLLG 163
           DLR+      D    +++L L   +Q +G
Sbjct: 485 DLRDQHA---DPQTSRSLLLLAKAVQSIG 510


>gi|24119166 retinoblastoma binding protein 9 [Homo sapiens]
          Length = 186

 Score = 27.3 bits (59), Expect = 7.9
 Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 1/55 (1%)

Query: 95  ELVKHEENGLVFEDSEELAALQMLFSNFPDPAGKLNQFWKDLRESQQLRWDESWV 149
           ++  H   G V ++ E++   Q L  N PDP       W    E+ +L  DE  +
Sbjct: 17  DVTTHGWYGWVKKELEKIPGFQCLAKNMPDPITARESIWLPFMET-ELHCDEKTI 70


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.323    0.138    0.442 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,635,110
Number of Sequences: 37866
Number of extensions: 341096
Number of successful extensions: 697
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 685
Number of HSP's gapped (non-prelim): 13
length of query: 187
length of database: 18,247,518
effective HSP length: 96
effective length of query: 91
effective length of database: 14,612,382
effective search space: 1329726762
effective search space used: 1329726762
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.