BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|62526029 neurochondrin isoform 1 [Homo sapiens] (729 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|24307949 neurochondrin isoform 1 [Homo sapiens] 1451 0.0 gi|62526029 neurochondrin isoform 1 [Homo sapiens] 1451 0.0 gi|62526031 neurochondrin isoform 2 [Homo sapiens] 1417 0.0 gi|207452735 epiplakin 1 [Homo sapiens] 32 2.1 gi|22748937 exportin 5 [Homo sapiens] 31 4.7 gi|145312241 differentially expressed in FDCP 6 homolog [Homo sa... 30 6.1 gi|199559954 coiled-coil domain containing 78 [Homo sapiens] 30 6.1 gi|89191868 von Willebrand factor preproprotein [Homo sapiens] 30 7.9 gi|5031955 solute carrier family 17 (sodium phosphate), member 2... 30 7.9 >gi|24307949 neurochondrin isoform 1 [Homo sapiens] Length = 729 Score = 1451 bits (3755), Expect = 0.0 Identities = 729/729 (100%), Positives = 729/729 (100%) Query: 1 MSCCDLAAAGQLGKASIMASDCEPALNQAEGRNPTLERYLGALREAKNDSEQFAALLLVT 60 MSCCDLAAAGQLGKASIMASDCEPALNQAEGRNPTLERYLGALREAKNDSEQFAALLLVT Sbjct: 1 MSCCDLAAAGQLGKASIMASDCEPALNQAEGRNPTLERYLGALREAKNDSEQFAALLLVT 60 Query: 61 KAVKAGDIDAKTRRRIFDAVGFTFPNRLLTTKEAPDGCPDHVLRALGVALLACFCSDPEL 120 KAVKAGDIDAKTRRRIFDAVGFTFPNRLLTTKEAPDGCPDHVLRALGVALLACFCSDPEL Sbjct: 61 KAVKAGDIDAKTRRRIFDAVGFTFPNRLLTTKEAPDGCPDHVLRALGVALLACFCSDPEL 120 Query: 121 AAHPQVLNKIPILSTFLTARGDPDDAARRSMIDDTYQCLTAVAGTPRGPRHLIAGGTVSA 180 AAHPQVLNKIPILSTFLTARGDPDDAARRSMIDDTYQCLTAVAGTPRGPRHLIAGGTVSA Sbjct: 121 AAHPQVLNKIPILSTFLTARGDPDDAARRSMIDDTYQCLTAVAGTPRGPRHLIAGGTVSA 180 Query: 181 LCQAYLGHGYGFDQALALLVGLLAAAETQCWKEAEPDLLAVLRGLSEDFQKAEDASKFEL 240 LCQAYLGHGYGFDQALALLVGLLAAAETQCWKEAEPDLLAVLRGLSEDFQKAEDASKFEL Sbjct: 181 LCQAYLGHGYGFDQALALLVGLLAAAETQCWKEAEPDLLAVLRGLSEDFQKAEDASKFEL 240 Query: 241 CQLLPLFLPPTTVPPECYRDLQAGLARILGSKLSSWQRNPALKLAARLAHACGSDWIPAG 300 CQLLPLFLPPTTVPPECYRDLQAGLARILGSKLSSWQRNPALKLAARLAHACGSDWIPAG Sbjct: 241 CQLLPLFLPPTTVPPECYRDLQAGLARILGSKLSSWQRNPALKLAARLAHACGSDWIPAG 300 Query: 301 SSGSKFLALLVNLACVEVRLALEETGTEVKEDVVTACYALMELGIQECTRCEQSLLKEPQ 360 SSGSKFLALLVNLACVEVRLALEETGTEVKEDVVTACYALMELGIQECTRCEQSLLKEPQ Sbjct: 301 SSGSKFLALLVNLACVEVRLALEETGTEVKEDVVTACYALMELGIQECTRCEQSLLKEPQ 360 Query: 361 KVQLVSVMKEAIGAVIHYLLQVGSEKQKEPFVFASVRILGAWLAEETSSLRKEVCQLLPF 420 KVQLVSVMKEAIGAVIHYLLQVGSEKQKEPFVFASVRILGAWLAEETSSLRKEVCQLLPF Sbjct: 361 KVQLVSVMKEAIGAVIHYLLQVGSEKQKEPFVFASVRILGAWLAEETSSLRKEVCQLLPF 420 Query: 421 LVRYAKTLYEEAEEANDLSQQVANLAISPTTPGPTWPGDALRLLLPGWCHLTVEDGPREI 480 LVRYAKTLYEEAEEANDLSQQVANLAISPTTPGPTWPGDALRLLLPGWCHLTVEDGPREI Sbjct: 421 LVRYAKTLYEEAEEANDLSQQVANLAISPTTPGPTWPGDALRLLLPGWCHLTVEDGPREI 480 Query: 481 LIKEGAPSLLCKYFLQQWELTSPGHDTSVLPDSVEIGLQTCCHIFLNLVVTAPGLIKRDA 540 LIKEGAPSLLCKYFLQQWELTSPGHDTSVLPDSVEIGLQTCCHIFLNLVVTAPGLIKRDA Sbjct: 481 LIKEGAPSLLCKYFLQQWELTSPGHDTSVLPDSVEIGLQTCCHIFLNLVVTAPGLIKRDA 540 Query: 541 CFTSLMNTLMTSLPALVQQQGRLLLAANVATLGLLMARLLSTSPALQGTPASRGFFAAAI 600 CFTSLMNTLMTSLPALVQQQGRLLLAANVATLGLLMARLLSTSPALQGTPASRGFFAAAI Sbjct: 541 CFTSLMNTLMTSLPALVQQQGRLLLAANVATLGLLMARLLSTSPALQGTPASRGFFAAAI 600 Query: 601 LFLSQSHVARATPGSDQAVLALSPEYEGIWADLQELWFLGMQAFTGCVPLLPWLAPAALR 660 LFLSQSHVARATPGSDQAVLALSPEYEGIWADLQELWFLGMQAFTGCVPLLPWLAPAALR Sbjct: 601 LFLSQSHVARATPGSDQAVLALSPEYEGIWADLQELWFLGMQAFTGCVPLLPWLAPAALR 660 Query: 661 SRWPQELLQLLGSVSPNSVKPEMVAAYQGVLVELARANRLCREAMRLQAGEETASHYRMA 720 SRWPQELLQLLGSVSPNSVKPEMVAAYQGVLVELARANRLCREAMRLQAGEETASHYRMA Sbjct: 661 SRWPQELLQLLGSVSPNSVKPEMVAAYQGVLVELARANRLCREAMRLQAGEETASHYRMA 720 Query: 721 ALEQCLSEP 729 ALEQCLSEP Sbjct: 721 ALEQCLSEP 729 >gi|62526029 neurochondrin isoform 1 [Homo sapiens] Length = 729 Score = 1451 bits (3755), Expect = 0.0 Identities = 729/729 (100%), Positives = 729/729 (100%) Query: 1 MSCCDLAAAGQLGKASIMASDCEPALNQAEGRNPTLERYLGALREAKNDSEQFAALLLVT 60 MSCCDLAAAGQLGKASIMASDCEPALNQAEGRNPTLERYLGALREAKNDSEQFAALLLVT Sbjct: 1 MSCCDLAAAGQLGKASIMASDCEPALNQAEGRNPTLERYLGALREAKNDSEQFAALLLVT 60 Query: 61 KAVKAGDIDAKTRRRIFDAVGFTFPNRLLTTKEAPDGCPDHVLRALGVALLACFCSDPEL 120 KAVKAGDIDAKTRRRIFDAVGFTFPNRLLTTKEAPDGCPDHVLRALGVALLACFCSDPEL Sbjct: 61 KAVKAGDIDAKTRRRIFDAVGFTFPNRLLTTKEAPDGCPDHVLRALGVALLACFCSDPEL 120 Query: 121 AAHPQVLNKIPILSTFLTARGDPDDAARRSMIDDTYQCLTAVAGTPRGPRHLIAGGTVSA 180 AAHPQVLNKIPILSTFLTARGDPDDAARRSMIDDTYQCLTAVAGTPRGPRHLIAGGTVSA Sbjct: 121 AAHPQVLNKIPILSTFLTARGDPDDAARRSMIDDTYQCLTAVAGTPRGPRHLIAGGTVSA 180 Query: 181 LCQAYLGHGYGFDQALALLVGLLAAAETQCWKEAEPDLLAVLRGLSEDFQKAEDASKFEL 240 LCQAYLGHGYGFDQALALLVGLLAAAETQCWKEAEPDLLAVLRGLSEDFQKAEDASKFEL Sbjct: 181 LCQAYLGHGYGFDQALALLVGLLAAAETQCWKEAEPDLLAVLRGLSEDFQKAEDASKFEL 240 Query: 241 CQLLPLFLPPTTVPPECYRDLQAGLARILGSKLSSWQRNPALKLAARLAHACGSDWIPAG 300 CQLLPLFLPPTTVPPECYRDLQAGLARILGSKLSSWQRNPALKLAARLAHACGSDWIPAG Sbjct: 241 CQLLPLFLPPTTVPPECYRDLQAGLARILGSKLSSWQRNPALKLAARLAHACGSDWIPAG 300 Query: 301 SSGSKFLALLVNLACVEVRLALEETGTEVKEDVVTACYALMELGIQECTRCEQSLLKEPQ 360 SSGSKFLALLVNLACVEVRLALEETGTEVKEDVVTACYALMELGIQECTRCEQSLLKEPQ Sbjct: 301 SSGSKFLALLVNLACVEVRLALEETGTEVKEDVVTACYALMELGIQECTRCEQSLLKEPQ 360 Query: 361 KVQLVSVMKEAIGAVIHYLLQVGSEKQKEPFVFASVRILGAWLAEETSSLRKEVCQLLPF 420 KVQLVSVMKEAIGAVIHYLLQVGSEKQKEPFVFASVRILGAWLAEETSSLRKEVCQLLPF Sbjct: 361 KVQLVSVMKEAIGAVIHYLLQVGSEKQKEPFVFASVRILGAWLAEETSSLRKEVCQLLPF 420 Query: 421 LVRYAKTLYEEAEEANDLSQQVANLAISPTTPGPTWPGDALRLLLPGWCHLTVEDGPREI 480 LVRYAKTLYEEAEEANDLSQQVANLAISPTTPGPTWPGDALRLLLPGWCHLTVEDGPREI Sbjct: 421 LVRYAKTLYEEAEEANDLSQQVANLAISPTTPGPTWPGDALRLLLPGWCHLTVEDGPREI 480 Query: 481 LIKEGAPSLLCKYFLQQWELTSPGHDTSVLPDSVEIGLQTCCHIFLNLVVTAPGLIKRDA 540 LIKEGAPSLLCKYFLQQWELTSPGHDTSVLPDSVEIGLQTCCHIFLNLVVTAPGLIKRDA Sbjct: 481 LIKEGAPSLLCKYFLQQWELTSPGHDTSVLPDSVEIGLQTCCHIFLNLVVTAPGLIKRDA 540 Query: 541 CFTSLMNTLMTSLPALVQQQGRLLLAANVATLGLLMARLLSTSPALQGTPASRGFFAAAI 600 CFTSLMNTLMTSLPALVQQQGRLLLAANVATLGLLMARLLSTSPALQGTPASRGFFAAAI Sbjct: 541 CFTSLMNTLMTSLPALVQQQGRLLLAANVATLGLLMARLLSTSPALQGTPASRGFFAAAI 600 Query: 601 LFLSQSHVARATPGSDQAVLALSPEYEGIWADLQELWFLGMQAFTGCVPLLPWLAPAALR 660 LFLSQSHVARATPGSDQAVLALSPEYEGIWADLQELWFLGMQAFTGCVPLLPWLAPAALR Sbjct: 601 LFLSQSHVARATPGSDQAVLALSPEYEGIWADLQELWFLGMQAFTGCVPLLPWLAPAALR 660 Query: 661 SRWPQELLQLLGSVSPNSVKPEMVAAYQGVLVELARANRLCREAMRLQAGEETASHYRMA 720 SRWPQELLQLLGSVSPNSVKPEMVAAYQGVLVELARANRLCREAMRLQAGEETASHYRMA Sbjct: 661 SRWPQELLQLLGSVSPNSVKPEMVAAYQGVLVELARANRLCREAMRLQAGEETASHYRMA 720 Query: 721 ALEQCLSEP 729 ALEQCLSEP Sbjct: 721 ALEQCLSEP 729 >gi|62526031 neurochondrin isoform 2 [Homo sapiens] Length = 712 Score = 1417 bits (3668), Expect = 0.0 Identities = 712/712 (100%), Positives = 712/712 (100%) Query: 18 MASDCEPALNQAEGRNPTLERYLGALREAKNDSEQFAALLLVTKAVKAGDIDAKTRRRIF 77 MASDCEPALNQAEGRNPTLERYLGALREAKNDSEQFAALLLVTKAVKAGDIDAKTRRRIF Sbjct: 1 MASDCEPALNQAEGRNPTLERYLGALREAKNDSEQFAALLLVTKAVKAGDIDAKTRRRIF 60 Query: 78 DAVGFTFPNRLLTTKEAPDGCPDHVLRALGVALLACFCSDPELAAHPQVLNKIPILSTFL 137 DAVGFTFPNRLLTTKEAPDGCPDHVLRALGVALLACFCSDPELAAHPQVLNKIPILSTFL Sbjct: 61 DAVGFTFPNRLLTTKEAPDGCPDHVLRALGVALLACFCSDPELAAHPQVLNKIPILSTFL 120 Query: 138 TARGDPDDAARRSMIDDTYQCLTAVAGTPRGPRHLIAGGTVSALCQAYLGHGYGFDQALA 197 TARGDPDDAARRSMIDDTYQCLTAVAGTPRGPRHLIAGGTVSALCQAYLGHGYGFDQALA Sbjct: 121 TARGDPDDAARRSMIDDTYQCLTAVAGTPRGPRHLIAGGTVSALCQAYLGHGYGFDQALA 180 Query: 198 LLVGLLAAAETQCWKEAEPDLLAVLRGLSEDFQKAEDASKFELCQLLPLFLPPTTVPPEC 257 LLVGLLAAAETQCWKEAEPDLLAVLRGLSEDFQKAEDASKFELCQLLPLFLPPTTVPPEC Sbjct: 181 LLVGLLAAAETQCWKEAEPDLLAVLRGLSEDFQKAEDASKFELCQLLPLFLPPTTVPPEC 240 Query: 258 YRDLQAGLARILGSKLSSWQRNPALKLAARLAHACGSDWIPAGSSGSKFLALLVNLACVE 317 YRDLQAGLARILGSKLSSWQRNPALKLAARLAHACGSDWIPAGSSGSKFLALLVNLACVE Sbjct: 241 YRDLQAGLARILGSKLSSWQRNPALKLAARLAHACGSDWIPAGSSGSKFLALLVNLACVE 300 Query: 318 VRLALEETGTEVKEDVVTACYALMELGIQECTRCEQSLLKEPQKVQLVSVMKEAIGAVIH 377 VRLALEETGTEVKEDVVTACYALMELGIQECTRCEQSLLKEPQKVQLVSVMKEAIGAVIH Sbjct: 301 VRLALEETGTEVKEDVVTACYALMELGIQECTRCEQSLLKEPQKVQLVSVMKEAIGAVIH 360 Query: 378 YLLQVGSEKQKEPFVFASVRILGAWLAEETSSLRKEVCQLLPFLVRYAKTLYEEAEEAND 437 YLLQVGSEKQKEPFVFASVRILGAWLAEETSSLRKEVCQLLPFLVRYAKTLYEEAEEAND Sbjct: 361 YLLQVGSEKQKEPFVFASVRILGAWLAEETSSLRKEVCQLLPFLVRYAKTLYEEAEEAND 420 Query: 438 LSQQVANLAISPTTPGPTWPGDALRLLLPGWCHLTVEDGPREILIKEGAPSLLCKYFLQQ 497 LSQQVANLAISPTTPGPTWPGDALRLLLPGWCHLTVEDGPREILIKEGAPSLLCKYFLQQ Sbjct: 421 LSQQVANLAISPTTPGPTWPGDALRLLLPGWCHLTVEDGPREILIKEGAPSLLCKYFLQQ 480 Query: 498 WELTSPGHDTSVLPDSVEIGLQTCCHIFLNLVVTAPGLIKRDACFTSLMNTLMTSLPALV 557 WELTSPGHDTSVLPDSVEIGLQTCCHIFLNLVVTAPGLIKRDACFTSLMNTLMTSLPALV Sbjct: 481 WELTSPGHDTSVLPDSVEIGLQTCCHIFLNLVVTAPGLIKRDACFTSLMNTLMTSLPALV 540 Query: 558 QQQGRLLLAANVATLGLLMARLLSTSPALQGTPASRGFFAAAILFLSQSHVARATPGSDQ 617 QQQGRLLLAANVATLGLLMARLLSTSPALQGTPASRGFFAAAILFLSQSHVARATPGSDQ Sbjct: 541 QQQGRLLLAANVATLGLLMARLLSTSPALQGTPASRGFFAAAILFLSQSHVARATPGSDQ 600 Query: 618 AVLALSPEYEGIWADLQELWFLGMQAFTGCVPLLPWLAPAALRSRWPQELLQLLGSVSPN 677 AVLALSPEYEGIWADLQELWFLGMQAFTGCVPLLPWLAPAALRSRWPQELLQLLGSVSPN Sbjct: 601 AVLALSPEYEGIWADLQELWFLGMQAFTGCVPLLPWLAPAALRSRWPQELLQLLGSVSPN 660 Query: 678 SVKPEMVAAYQGVLVELARANRLCREAMRLQAGEETASHYRMAALEQCLSEP 729 SVKPEMVAAYQGVLVELARANRLCREAMRLQAGEETASHYRMAALEQCLSEP Sbjct: 661 SVKPEMVAAYQGVLVELARANRLCREAMRLQAGEETASHYRMAALEQCLSEP 712 >gi|207452735 epiplakin 1 [Homo sapiens] Length = 5090 Score = 32.0 bits (71), Expect = 2.1 Identities = 17/42 (40%), Positives = 20/42 (47%) Query: 418 LPFLVRYAKTLYEEAEEANDLSQQVANLAISPTTPGPTWPGD 459 LP L R + EEAEEA Q+ + P PGP GD Sbjct: 2564 LPALTRRLTAIIEEAEEAPGARPQLQDARRGPREPGPAGRGD 2605 Score = 31.2 bits (69), Expect = 3.6 Identities = 17/42 (40%), Positives = 20/42 (47%) Query: 418 LPFLVRYAKTLYEEAEEANDLSQQVANLAISPTTPGPTWPGD 459 LP L R + EEAEEA Q+ + P PGP GD Sbjct: 3098 LPALTRRLTAIIEEAEEAPGARPQLQDAWRGPREPGPAGRGD 3139 Score = 31.2 bits (69), Expect = 3.6 Identities = 17/42 (40%), Positives = 20/42 (47%) Query: 418 LPFLVRYAKTLYEEAEEANDLSQQVANLAISPTTPGPTWPGD 459 LP L R + EEAEEA Q+ + P PGP GD Sbjct: 3632 LPALTRRLTAIIEEAEEAPGARPQLQDAWRGPREPGPAGRGD 3673 Score = 31.2 bits (69), Expect = 3.6 Identities = 17/42 (40%), Positives = 20/42 (47%) Query: 418 LPFLVRYAKTLYEEAEEANDLSQQVANLAISPTTPGPTWPGD 459 LP L R + EEAEEA Q+ + P PGP GD Sbjct: 4166 LPALTRRLTAIIEEAEEAPGARPQLQDAWRGPREPGPAGRGD 4207 Score = 31.2 bits (69), Expect = 3.6 Identities = 17/42 (40%), Positives = 20/42 (47%) Query: 418 LPFLVRYAKTLYEEAEEANDLSQQVANLAISPTTPGPTWPGD 459 LP L R + EEAEEA Q+ + P PGP GD Sbjct: 4700 LPALTRRLTAIIEEAEEAPGARPQLQDAWRGPREPGPAGRGD 4741 >gi|22748937 exportin 5 [Homo sapiens] Length = 1204 Score = 30.8 bits (68), Expect = 4.7 Identities = 33/112 (29%), Positives = 51/112 (45%), Gaps = 12/112 (10%) Query: 172 LIAGGTVSALCQAYLGHGYGFDQALALLVGLLAAAETQCWKEAEPDLLAVLRGLSEDFQK 231 LIA GT++ L + H AL+ +V + E W + PD+L L LS+ + Sbjct: 97 LIANGTLNILEEE--NH---IKDALSRIVVEMIKRE---WPQHWPDMLIELDTLSKQGET 148 Query: 232 AEDASKFELCQLLPLFLPPTTVPPECYRDLQAGLA----RILGSKLSSWQRN 279 + F L +L + T+PP+ RD+Q L RI L++ Q N Sbjct: 149 QTELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQEN 200 >gi|145312241 differentially expressed in FDCP 6 homolog [Homo sapiens] Length = 631 Score = 30.4 bits (67), Expect = 6.1 Identities = 39/130 (30%), Positives = 62/130 (47%), Gaps = 16/130 (12%) Query: 317 EVRLALEETGTEVKEDVVTACYALMELGIQECTRCEQSLLKEPQKVQLVSVMKEAIGAVI 376 E++ ALE E E + A MEL +E R Q + KE +++Q ++EA+ Sbjct: 391 ELQQALEGQLREA-EQARASMQAEMELKEEEAARQRQRI-KELEEMQ--QRLQEALQ--- 443 Query: 377 HYLLQVGSEKQKEPFVFASVRILGAWLAEETSSLRKEVCQLLPFLVRYAKTLYEEAEE-A 435 L+V + + +E SVRI L EE K++ QL RY + +E EE Sbjct: 444 ---LEVKARRDEE-----SVRIAQTRLLEEEEEKLKQLMQLKEEQERYIERAQQEKEELQ 495 Query: 436 NDLSQQVANL 445 +++QQ +L Sbjct: 496 QEMAQQSRSL 505 >gi|199559954 coiled-coil domain containing 78 [Homo sapiens] Length = 438 Score = 30.4 bits (67), Expect = 6.1 Identities = 24/71 (33%), Positives = 31/71 (43%), Gaps = 1/71 (1%) Query: 8 AAGQ-LGKASIMASDCEPALNQAEGRNPTLERYLGALREAKNDSEQFAALLLVTKAVKAG 66 AAGQ L +++ C+ L QAE N L+ L L++ Q A V A AG Sbjct: 203 AAGQRLATQAVVLCSCQGQLRQAEAENARLQLQLKKLKDEYVLRLQHCAWQAVEHADGAG 262 Query: 67 DIDAKTRRRIF 77 A T R F Sbjct: 263 QAPATTALRTF 273 >gi|89191868 von Willebrand factor preproprotein [Homo sapiens] Length = 2813 Score = 30.0 bits (66), Expect = 7.9 Identities = 23/107 (21%), Positives = 47/107 (43%), Gaps = 13/107 (12%) Query: 467 GWCHLTVEDGPREILIKEGAPSLLCKYFLQQWELTSPG-------HDTSVLPDS-----V 514 G C + E+G + ++++G + K +Q+W + PG + ++PDS + Sbjct: 2083 GLCGICDENGANDFMLRDGTVTTDWKTLVQEWTVQRPGQTCQPILEEQCLVPDSSHCQVL 2142 Query: 515 EIGLQTCCHIFLNLVVTAPGLIKRDACFTSLMNTLMTSLPALVQQQG 561 + L CH L T + ++D+C + ++ S L + G Sbjct: 2143 LLPLFAECHKVL-APATFYAICQQDSCHQEQVCEVIASYAHLCRTNG 2188 >gi|5031955 solute carrier family 17 (sodium phosphate), member 2 [Homo sapiens] Length = 436 Score = 30.0 bits (66), Expect = 7.9 Identities = 17/55 (30%), Positives = 26/55 (47%) Query: 414 VCQLLPFLVRYAKTLYEEAEEANDLSQQVANLAISPTTPGPTWPGDALRLLLPGW 468 VC LL F V Y ++ + +++LA P++PG P A+ LP W Sbjct: 222 VCCLLWFTVIYDDPMHHPCISVREKEHILSSLAQQPSSPGRAVPIKAMVTCLPLW 276 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.320 0.134 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 28,344,154 Number of Sequences: 37866 Number of extensions: 1290203 Number of successful extensions: 2968 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 6 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 2950 Number of HSP's gapped (non-prelim): 15 length of query: 729 length of database: 18,247,518 effective HSP length: 110 effective length of query: 619 effective length of database: 14,082,258 effective search space: 8716917702 effective search space used: 8716917702 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 66 (30.0 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.