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Search of human proteins with 60302912
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|60302912 integral membrane protein 2C isoform 3 [Homo
sapiens]
(220 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|60302912 integral membrane protein 2C isoform 3 [Homo sapiens] 446 e-126
gi|13569885 integral membrane protein 2C isoform 1 [Homo sapiens] 423 e-119
gi|60302914 integral membrane protein 2C isoform 2 [Homo sapiens] 328 2e-90
gi|11527402 integral membrane protein 2B [Homo sapiens] 203 8e-53
gi|4758224 integral membrane protein 2A [Homo sapiens] 159 1e-39
gi|59806343 leukocyte cell derived chemotaxin 1 isoform 2 precur... 29 2.8
gi|5901932 leukocyte cell derived chemotaxin 1 isoform 1 precurs... 29 2.8
gi|149773468 RAD51 associated protein 2 [Homo sapiens] 29 3.6
gi|156627559 tenomodulin [Homo sapiens] 28 6.1
>gi|60302912 integral membrane protein 2C isoform 3 [Homo sapiens]
Length = 220
Score = 446 bits (1146), Expect = e-126
Identities = 220/220 (100%), Positives = 220/220 (100%)
Query: 1 MVKISFQPAVAGIKGDKADKASASAPAPASATEILLTPARLARDNFFRCGVLYEDSLSSQ 60
MVKISFQPAVAGIKGDKADKASASAPAPASATEILLTPARLARDNFFRCGVLYEDSLSSQ
Sbjct: 1 MVKISFQPAVAGIKGDKADKASASAPAPASATEILLTPARLARDNFFRCGVLYEDSLSSQ 60
Query: 61 VRTQMELEEDVKIYLDENYERINVPVPQFGGGDPADIIHDFQRGLTAYHDISLDKCYVIE 120
VRTQMELEEDVKIYLDENYERINVPVPQFGGGDPADIIHDFQRGLTAYHDISLDKCYVIE
Sbjct: 61 VRTQMELEEDVKIYLDENYERINVPVPQFGGGDPADIIHDFQRGLTAYHDISLDKCYVIE 120
Query: 121 LNTTIVLPPRNFWELLMNVKRGTYLPQTYIIQEEMVVTEHVSDKEALGSFIYHLCNGKDT 180
LNTTIVLPPRNFWELLMNVKRGTYLPQTYIIQEEMVVTEHVSDKEALGSFIYHLCNGKDT
Sbjct: 121 LNTTIVLPPRNFWELLMNVKRGTYLPQTYIIQEEMVVTEHVSDKEALGSFIYHLCNGKDT 180
Query: 181 YRLRRRATRRRINKRGAKNCNAIRHFENTFVVETLICGVV 220
YRLRRRATRRRINKRGAKNCNAIRHFENTFVVETLICGVV
Sbjct: 181 YRLRRRATRRRINKRGAKNCNAIRHFENTFVVETLICGVV 220
>gi|13569885 integral membrane protein 2C isoform 1 [Homo sapiens]
Length = 267
Score = 423 bits (1088), Expect = e-119
Identities = 220/267 (82%), Positives = 220/267 (82%), Gaps = 47/267 (17%)
Query: 1 MVKISFQPAVAGIKGDKADKASASAPAPASATEILLTPAR-------------------- 40
MVKISFQPAVAGIKGDKADKASASAPAPASATEILLTPAR
Sbjct: 1 MVKISFQPAVAGIKGDKADKASASAPAPASATEILLTPAREEQPPQHRSKRGGSVGGVCY 60
Query: 41 ---------------------------LARDNFFRCGVLYEDSLSSQVRTQMELEEDVKI 73
LARDNFFRCGVLYEDSLSSQVRTQMELEEDVKI
Sbjct: 61 LSMGMVVLLMGLVFASVYIYRYFFLAQLARDNFFRCGVLYEDSLSSQVRTQMELEEDVKI 120
Query: 74 YLDENYERINVPVPQFGGGDPADIIHDFQRGLTAYHDISLDKCYVIELNTTIVLPPRNFW 133
YLDENYERINVPVPQFGGGDPADIIHDFQRGLTAYHDISLDKCYVIELNTTIVLPPRNFW
Sbjct: 121 YLDENYERINVPVPQFGGGDPADIIHDFQRGLTAYHDISLDKCYVIELNTTIVLPPRNFW 180
Query: 134 ELLMNVKRGTYLPQTYIIQEEMVVTEHVSDKEALGSFIYHLCNGKDTYRLRRRATRRRIN 193
ELLMNVKRGTYLPQTYIIQEEMVVTEHVSDKEALGSFIYHLCNGKDTYRLRRRATRRRIN
Sbjct: 181 ELLMNVKRGTYLPQTYIIQEEMVVTEHVSDKEALGSFIYHLCNGKDTYRLRRRATRRRIN 240
Query: 194 KRGAKNCNAIRHFENTFVVETLICGVV 220
KRGAKNCNAIRHFENTFVVETLICGVV
Sbjct: 241 KRGAKNCNAIRHFENTFVVETLICGVV 267
>gi|60302914 integral membrane protein 2C isoform 2 [Homo sapiens]
Length = 230
Score = 328 bits (841), Expect = 2e-90
Identities = 183/267 (68%), Positives = 183/267 (68%), Gaps = 84/267 (31%)
Query: 1 MVKISFQPAVAGIKGDKADKASASAPAPASATEILLTPAR-------------------- 40
MVKISFQPAVAGIKGDKADKASASAPAPASATEILLTPAR
Sbjct: 1 MVKISFQPAVAGIKGDKADKASASAPAPASATEILLTPAREEQPPQHRSKRGGSVGGVCY 60
Query: 41 ---------------------------LARDNFFRCGVLYEDSLSSQVRTQMELEEDVKI 73
LARDNFFRCGVLYEDSLSSQVRTQMELEEDVKI
Sbjct: 61 LSMGMVVLLMGLVFASVYIYRYFFLAQLARDNFFRCGVLYEDSLSSQVRTQMELEEDVKI 120
Query: 74 YLDENYERINVPVPQFGGGDPADIIHDFQRGLTAYHDISLDKCYVIELNTTIVLPPRNFW 133
YLDENYERINVPVPQFGGGDPADIIHDFQR
Sbjct: 121 YLDENYERINVPVPQFGGGDPADIIHDFQR------------------------------ 150
Query: 134 ELLMNVKRGTYLPQTYIIQEEMVVTEHVSDKEALGSFIYHLCNGKDTYRLRRRATRRRIN 193
RGTYLPQTYIIQEEMVVTEHVSDKEALGSFIYHLCNGKDTYRLRRRATRRRIN
Sbjct: 151 -------RGTYLPQTYIIQEEMVVTEHVSDKEALGSFIYHLCNGKDTYRLRRRATRRRIN 203
Query: 194 KRGAKNCNAIRHFENTFVVETLICGVV 220
KRGAKNCNAIRHFENTFVVETLICGVV
Sbjct: 204 KRGAKNCNAIRHFENTFVVETLICGVV 230
>gi|11527402 integral membrane protein 2B [Homo sapiens]
Length = 266
Score = 203 bits (517), Expect = 8e-53
Identities = 98/185 (52%), Positives = 130/185 (70%), Gaps = 8/185 (4%)
Query: 41 LARDNFFRCGVLY--------EDSLSSQVRTQMELEEDVKIYLDENYERINVPVPQFGGG 92
L D+ + CG+ Y E S + +EE++KI+ +E E I+VPVP+F
Sbjct: 81 LQPDDVYYCGIKYIKDDVILNEPSADAPAALYQTIEENIKIFEEEEVEFISVPVPEFADS 140
Query: 93 DPADIIHDFQRGLTAYHDISLDKCYVIELNTTIVLPPRNFWELLMNVKRGTYLPQTYIIQ 152
DPA+I+HDF + LTAY D++LDKCYVI LNT+IV+PPRN ELL+N+K GTYLPQ+Y+I
Sbjct: 141 DPANIVHDFNKKLTAYLDLNLDKCYVIPLNTSIVMPPRNLLELLINIKAGTYLPQSYLIH 200
Query: 153 EEMVVTEHVSDKEALGSFIYHLCNGKDTYRLRRRATRRRINKRGAKNCNAIRHFENTFVV 212
E MV+T+ + + + LG FIY LC+ K+TY+L+RR T + I KR A NC AIRHFEN F V
Sbjct: 201 EHMVITDRIENIDHLGFFIYRLCHDKETYKLQRRETIKGIQKREASNCFAIRHFENKFAV 260
Query: 213 ETLIC 217
ETLIC
Sbjct: 261 ETLIC 265
>gi|4758224 integral membrane protein 2A [Homo sapiens]
Length = 263
Score = 159 bits (403), Expect = 1e-39
Identities = 75/153 (49%), Positives = 100/153 (65%)
Query: 65 MELEEDVKIYLDENYERINVPVPQFGGGDPADIIHDFQRGLTAYHDISLDKCYVIELNTT 124
+ + E+ I D+N I+VPVP F DPA IIHDF++G+TAY D+ L CY++ LNT+
Sbjct: 109 LPVTEEADIREDDNIAIIDVPVPSFSDSDPAAIIHDFEKGMTAYLDLLLGNCYLMPLNTS 168
Query: 125 IVLPPRNFWELLMNVKRGTYLPQTYIIQEEMVVTEHVSDKEALGSFIYHLCNGKDTYRLR 184
IV+PP+N EL + G YLPQTY+++E++V E + D LG FIY LCN + ++RLR
Sbjct: 169 IVMPPKNLVELFGKLASGRYLPQTYVVREDLVAVEEIRDVSNLGIFIYQLCNNRKSFRLR 228
Query: 185 RRATRRRINKRGAKNCNAIRHFENTFVVETLIC 217
RR NKR C IRHF N F+VET IC
Sbjct: 229 RRDLLLGFNKRAIDKCWKIRHFPNEFIVETKIC 261
>gi|59806343 leukocyte cell derived chemotaxin 1 isoform 2 precursor
[Homo sapiens]
Length = 333
Score = 29.3 bits (64), Expect = 2.8
Identities = 28/117 (23%), Positives = 47/117 (40%), Gaps = 15/117 (12%)
Query: 91 GGDPADIIHDFQRGLTAYHDISLDKCYV-IELNTTIVLPPRNFWELLMNVKRGTYLPQTY 149
G + A ++DFQ G+T +KCY+ ++ I + + + G +P Y
Sbjct: 106 GAEEAIAVNDFQNGITGIRFAGGEKCYIKAQVKARIPEVGAVTKQSISSKLEGKIMPVKY 165
Query: 150 IIQEE-----MVVTEHVSDKEALGSFIYHLCNG------KDTYRLRRRATRRRINKR 195
EE + V + V D L S + LC K TY + RR + ++
Sbjct: 166 ---EENSLIWVAVDQPVKDNSFLSSKVLELCGDLPIFWLKPTYPKEIQRERREVVRK 219
>gi|5901932 leukocyte cell derived chemotaxin 1 isoform 1 precursor
[Homo sapiens]
Length = 334
Score = 29.3 bits (64), Expect = 2.8
Identities = 28/117 (23%), Positives = 47/117 (40%), Gaps = 15/117 (12%)
Query: 91 GGDPADIIHDFQRGLTAYHDISLDKCYV-IELNTTIVLPPRNFWELLMNVKRGTYLPQTY 149
G + A ++DFQ G+T +KCY+ ++ I + + + G +P Y
Sbjct: 106 GAEEAIAVNDFQNGITGIRFAGGEKCYIKAQVKARIPEVGAVTKQSISSKLEGKIMPVKY 165
Query: 150 IIQEE-----MVVTEHVSDKEALGSFIYHLCNG------KDTYRLRRRATRRRINKR 195
EE + V + V D L S + LC K TY + RR + ++
Sbjct: 166 ---EENSLIWVAVDQPVKDNSFLSSKVLELCGDLPIFWLKPTYPKEIQRERREVVRK 219
>gi|149773468 RAD51 associated protein 2 [Homo sapiens]
Length = 1159
Score = 28.9 bits (63), Expect = 3.6
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 7/63 (11%)
Query: 96 DIIHDFQRGLTAYHDISLDKCYVIELNTTIVLPPRNFWELLMNVKRGTYLPQTYIIQEEM 155
D+ + Q+ + A H+I ++ E +TT + NFW LL ++ Y I++EE+
Sbjct: 785 DLCNVRQQAIPASHNIIHNE----ETHTTSITQVLNFWNLLSEIEEKKY---DLILKEEV 837
Query: 156 VVT 158
VT
Sbjct: 838 KVT 840
>gi|156627559 tenomodulin [Homo sapiens]
Length = 317
Score = 28.1 bits (61), Expect = 6.1
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 91 GGDPADIIHDFQRGLTAYHDISLDKCYV 118
G D +HDF+ G T + + L KC++
Sbjct: 95 GTDETLEVHDFKNGYTGIYFVGLQKCFI 122
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.137 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,300,500
Number of Sequences: 37866
Number of extensions: 366492
Number of successful extensions: 1071
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1062
Number of HSP's gapped (non-prelim): 12
length of query: 220
length of database: 18,247,518
effective HSP length: 98
effective length of query: 122
effective length of database: 14,536,650
effective search space: 1773471300
effective search space used: 1773471300
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.