Search of human proteins with 59891409

Search of human proteins with 59891409

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|59891409 ropporin, rhophilin associated protein 1B [Homo
sapiens]
         (212 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|59891409 ropporin, rhophilin associated protein 1B [Homo sapi...   432   e-122
gi|21359920 ropporin [Homo sapiens]                                   409   e-114
gi|17572807 ropporin 1-like [Homo sapiens]                            155   2e-38
gi|4758958 cAMP-dependent protein kinase, regulatory subunit alp...    36   0.028
gi|154350241 brefeldin A-inhibited guanine nucleotide-exchange p...    29   2.6  
gi|38202205 zinc finger, FYVE domain containing 26 [Homo sapiens]      29   2.6  
gi|47132585 cAMP-dependent protein kinase, regulatory subunit be...    28   5.7  
gi|46852147 mitochondrial isoleucine tRNA synthetase [Homo sapiens]    28   7.5  
gi|32455269 serine/threonine kinase 32C [Homo sapiens]                 27   9.8  

>gi|59891409 ropporin, rhophilin associated protein 1B [Homo
           sapiens]
          Length = 212

 Score =  432 bits (1112), Expect = e-122
 Identities = 212/212 (100%), Positives = 212/212 (100%)

Query: 1   MAQTDKPTCIPPELPKMLKEFAKAAIRAQPQDLIQWGADYFEALSRGETPPVRERSERVA 60
           MAQTDKPTCIPPELPKMLKEFAKAAIRAQPQDLIQWGADYFEALSRGETPPVRERSERVA
Sbjct: 1   MAQTDKPTCIPPELPKMLKEFAKAAIRAQPQDLIQWGADYFEALSRGETPPVRERSERVA 60

Query: 61  LCNWAELTPELLKILHSQVAGRLIIRAEELAQMWKVVNLPTDLFNSVMNVGRFTEEIEWL 120
           LCNWAELTPELLKILHSQVAGRLIIRAEELAQMWKVVNLPTDLFNSVMNVGRFTEEIEWL
Sbjct: 61  LCNWAELTPELLKILHSQVAGRLIIRAEELAQMWKVVNLPTDLFNSVMNVGRFTEEIEWL 120

Query: 121 KFLALACSALGVTITKTLKIVCEVLSCDHNGGLPRIPFSTFQFLYTYIAEVDGEICASHV 180
           KFLALACSALGVTITKTLKIVCEVLSCDHNGGLPRIPFSTFQFLYTYIAEVDGEICASHV
Sbjct: 121 KFLALACSALGVTITKTLKIVCEVLSCDHNGGLPRIPFSTFQFLYTYIAEVDGEICASHV 180

Query: 181 SRMLNYIEQEVIGPDGLITVNDFTQNPRVWLE 212
           SRMLNYIEQEVIGPDGLITVNDFTQNPRVWLE
Sbjct: 181 SRMLNYIEQEVIGPDGLITVNDFTQNPRVWLE 212


>gi|21359920 ropporin [Homo sapiens]
          Length = 212

 Score =  409 bits (1050), Expect = e-114
 Identities = 203/212 (95%), Positives = 206/212 (97%)

Query: 1   MAQTDKPTCIPPELPKMLKEFAKAAIRAQPQDLIQWGADYFEALSRGETPPVRERSERVA 60
           MAQTDKPTCIPPELPKMLKEFAKAAIR QPQDLIQW ADYFEALSRGETPPVRERSERVA
Sbjct: 1   MAQTDKPTCIPPELPKMLKEFAKAAIRVQPQDLIQWAADYFEALSRGETPPVRERSERVA 60

Query: 61  LCNWAELTPELLKILHSQVAGRLIIRAEELAQMWKVVNLPTDLFNSVMNVGRFTEEIEWL 120
           LCN AELTPELLKILHSQVAGRLIIRAEELAQMWKVVNLPTDLFNSVMNVGRFTEEIEWL
Sbjct: 61  LCNRAELTPELLKILHSQVAGRLIIRAEELAQMWKVVNLPTDLFNSVMNVGRFTEEIEWL 120

Query: 121 KFLALACSALGVTITKTLKIVCEVLSCDHNGGLPRIPFSTFQFLYTYIAEVDGEICASHV 180
           KFLALACSALGVTITKTLKIVCEVLSCDHNGG PRIPFSTFQFLYTYIA+VDGEI ASHV
Sbjct: 121 KFLALACSALGVTITKTLKIVCEVLSCDHNGGSPRIPFSTFQFLYTYIAKVDGEISASHV 180

Query: 181 SRMLNYIEQEVIGPDGLITVNDFTQNPRVWLE 212
           SRMLNY+EQEVIGPDG+ITVNDFTQNPRV LE
Sbjct: 181 SRMLNYMEQEVIGPDGIITVNDFTQNPRVQLE 212


>gi|17572807 ropporin 1-like [Homo sapiens]
          Length = 230

 Score =  155 bits (393), Expect = 2e-38
 Identities = 81/206 (39%), Positives = 122/206 (59%), Gaps = 3/206 (1%)

Query: 10  IPPELPKMLKEFAKAAIRAQPQDLIQWGADYFEALSRGETPPVRERSERVALCNWAE--L 67
           IPPELP +LK+F KAAIR QP D+++W A YF ALSRG+  PV++R E        +  L
Sbjct: 15  IPPELPDILKQFTKAAIRTQPADVLRWSAGYFSALSRGDPLPVKDRMEMPTATQKTDTGL 74

Query: 68  TPELLKILHSQVAGRLIIRAEELAQMWKVVNLPTDLFNSVMNVGRFTEEIEWLKFLALAC 127
           T  LLK+LH Q   +  +   +L Q WK + LP + F +++ +     +I+W+ FLAL C
Sbjct: 75  TQGLLKVLHKQCHHKRYVELTDLEQKWKNLCLPKEKFKALLQLDPCENKIKWINFLALGC 134

Query: 128 SALGVTITKTLKIVCEVLSCDHNGGLPRIPFSTFQFLYTYIAEVDGEICASHVSRMLNYI 187
           S LG ++   LK +CE+L+ D  GG  RIPF TF ++Y Y+A +D ++        L  +
Sbjct: 135 SMLGGSLNTALKHLCEILTDDPEGGPARIPFKTFSYVYRYLARLDSDVSPLETESYLASL 194

Query: 188 EQEV-IGPDGLITVNDFTQNPRVWLE 212
           ++ +    +G+I ++DF    R  LE
Sbjct: 195 KENIDARKNGMIGLSDFFFPKRKLLE 220


>gi|4758958 cAMP-dependent protein kinase, regulatory subunit
          alpha 2 [Homo sapiens]
          Length = 404

 Score = 35.8 bits (81), Expect = 0.028
 Identities = 14/41 (34%), Positives = 23/41 (56%)

Query: 10 IPPELPKMLKEFAKAAIRAQPQDLIQWGADYFEALSRGETP 50
          IPP L ++L+ +    +R QP DL+++  +YF  L     P
Sbjct: 6  IPPGLTELLQGYTVEVLRQQPPDLVEFAVEYFTRLREARAP 46


>gi|154350241 brefeldin A-inhibited guanine nucleotide-exchange
            protein 3 [Homo sapiens]
          Length = 2177

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 5/39 (12%)

Query: 113  FTEEIEWLKFLALACSALGVTITKTLKIVCEVLSCDHNG 151
            FTEE+ W     LAC AL    + TLK V ++L C H+G
Sbjct: 1599 FTEEM-W----RLACCALQDAFSATLKPVKDLLGCFHSG 1632


>gi|38202205 zinc finger, FYVE domain containing 26 [Homo sapiens]
          Length = 2539

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 28/96 (29%), Positives = 45/96 (46%), Gaps = 15/96 (15%)

Query: 41   FEALSRGETPPVRE-----RSERVALCNWAELTPELLKILHSQVAGRLIIRAEE---LAQ 92
            FEA       P+R      +S  V LC WA L+  LL  LHS +A  ++  A E   +A+
Sbjct: 1366 FEAFLLAAWEPLRGSLQQGQSLAVNLCGWASLSTVLLG-LHSPIALDVLSEAFEESLVAR 1424

Query: 93   MWKVVNLPTDLFNSVMNVGRFTEEIEWLKFLALACS 128
             W      T+++      GR  +++  +K   L+C+
Sbjct: 1425 DWSRALQLTEVY------GRDVDDLSSIKDAVLSCA 1454


>gi|47132585 cAMP-dependent protein kinase, regulatory subunit
          beta 2 [Homo sapiens]
          Length = 418

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 12/37 (32%), Positives = 21/37 (56%)

Query: 10 IPPELPKMLKEFAKAAIRAQPQDLIQWGADYFEALSR 46
          IP  L ++L+ F    +R QP DL+++   +F  L +
Sbjct: 5  IPAGLTELLQGFTVEVLRHQPADLLEFALQHFTRLQQ 41


>gi|46852147 mitochondrial isoleucine tRNA synthetase [Homo sapiens]
          Length = 1012

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 12/25 (48%), Positives = 15/25 (60%)

Query: 13  ELPKMLKEFAKAAIRAQPQDLIQWG 37
           E+ K  + FAKAAI  Q    I+WG
Sbjct: 179 EIRKKARSFAKAAIEKQKSAFIRWG 203


>gi|32455269 serine/threonine kinase 32C [Homo sapiens]
          Length = 486

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 11/35 (31%), Positives = 18/35 (51%)

Query: 2  AQTDKPTCIPPELPKMLKEFAKAAIRAQPQDLIQW 36
          A +D P+ +PP      +      +R+QP+ L QW
Sbjct: 27 AGSDAPSALPPPAAGQPRARDSGDVRSQPRPLFQW 61


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.322    0.137    0.423 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,602,919
Number of Sequences: 37866
Number of extensions: 350353
Number of successful extensions: 632
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 623
Number of HSP's gapped (non-prelim): 9
length of query: 212
length of database: 18,247,518
effective HSP length: 98
effective length of query: 114
effective length of database: 14,536,650
effective search space: 1657178100
effective search space used: 1657178100
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.