Search of human proteins with 5901926

Search of human proteins with 5901926

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|5901926 cleavage and polyadenylation specific factor 5 [Homo
sapiens]
         (227 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|5901926 cleavage and polyadenylation specific factor 5 [Homo ...   473   e-134
gi|193788560 cerebral endothelial cell adhesion molecule 1 [Homo...    32   0.45 
gi|239757925 PREDICTED: similar to melanoma antigen family C, 2 ...    30   1.3  
gi|239752435 PREDICTED: similar to melanoma antigen family C, 2 ...    30   1.3  
gi|239746952 PREDICTED: similar to melanoma antigen family C, 2 ...    30   1.3  
gi|4758410 fragile X mental retardation syndrome related protein...    30   2.2  
gi|24308211 integrator complex subunit 2 [Homo sapiens]                28   8.4  

>gi|5901926 cleavage and polyadenylation specific factor 5 [Homo
           sapiens]
          Length = 227

 Score =  473 bits (1217), Expect = e-134
 Identities = 227/227 (100%), Positives = 227/227 (100%)

Query: 1   MSVVPPNRSQTGWPRGVTQFGNKYIQQTKPLTLERTINLYPLTNYTFGTKEPLYEKDSSV 60
           MSVVPPNRSQTGWPRGVTQFGNKYIQQTKPLTLERTINLYPLTNYTFGTKEPLYEKDSSV
Sbjct: 1   MSVVPPNRSQTGWPRGVTQFGNKYIQQTKPLTLERTINLYPLTNYTFGTKEPLYEKDSSV 60

Query: 61  AARFQRMREEFDKIGMRRTVEGVLIVHEHRLPHVLLLQLGTTFFKLPGGELNPGEDEVEG 120
           AARFQRMREEFDKIGMRRTVEGVLIVHEHRLPHVLLLQLGTTFFKLPGGELNPGEDEVEG
Sbjct: 61  AARFQRMREEFDKIGMRRTVEGVLIVHEHRLPHVLLLQLGTTFFKLPGGELNPGEDEVEG 120

Query: 121 LKRLMTEILGRQDGVLQDWVIDDCIGNWWRPNFEPPQYPYIPAHITKPKEHKKLFLVQLQ 180
           LKRLMTEILGRQDGVLQDWVIDDCIGNWWRPNFEPPQYPYIPAHITKPKEHKKLFLVQLQ
Sbjct: 121 LKRLMTEILGRQDGVLQDWVIDDCIGNWWRPNFEPPQYPYIPAHITKPKEHKKLFLVQLQ 180

Query: 181 EKALFAVPKNYKLVAAPLFELYDNAPGYGPIISSLPQLLSRFNFIYN 227
           EKALFAVPKNYKLVAAPLFELYDNAPGYGPIISSLPQLLSRFNFIYN
Sbjct: 181 EKALFAVPKNYKLVAAPLFELYDNAPGYGPIISSLPQLLSRFNFIYN 227


>gi|193788560 cerebral endothelial cell adhesion molecule 1 [Homo
           sapiens]
          Length = 595

 Score = 32.0 bits (71), Expect = 0.45
 Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 8/55 (14%)

Query: 135 VLQDWVI---DDCIGNWWRPNFEPPQYP--YIPAHITKPKEHKKLFLVQLQEKAL 184
           +LQ+W+    DD     WRP  EP  YP    P H TK +     FL++L+++AL
Sbjct: 79  MLQEWLAAVGDDYAAVVWRPEGEPRFYPDEEGPKHWTKERHQ---FLMELKQEAL 130


>gi|239757925 PREDICTED: similar to melanoma antigen family C, 2
           [Homo sapiens]
          Length = 347

 Score = 30.4 bits (67), Expect = 1.3
 Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 3/57 (5%)

Query: 139 WVIDDCIGNWWRPNFEPPQYPYI---PAHITKPKEHKKLFLVQLQEKALFAVPKNYK 192
           WV +  +  W  PN  PP+Y ++    AH    K+    FL +L      + P  YK
Sbjct: 252 WVQEHYLEYWEVPNSSPPRYEFLWGPRAHSESTKQKVLEFLAKLYNSIPISFPSWYK 308


>gi|239752435 PREDICTED: similar to melanoma antigen family C, 2
           [Homo sapiens]
          Length = 424

 Score = 30.4 bits (67), Expect = 1.3
 Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 3/57 (5%)

Query: 139 WVIDDCIGNWWRPNFEPPQYPYI---PAHITKPKEHKKLFLVQLQEKALFAVPKNYK 192
           WV +  +  W  PN  PP+Y ++    AH    K+    FL +L      + P  YK
Sbjct: 329 WVQEHYLEYWEVPNSSPPRYEFLWGPRAHSESTKQKVLEFLAKLYNSIPISFPSWYK 385


>gi|239746952 PREDICTED: similar to melanoma antigen family C, 2
           [Homo sapiens]
          Length = 424

 Score = 30.4 bits (67), Expect = 1.3
 Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 3/57 (5%)

Query: 139 WVIDDCIGNWWRPNFEPPQYPYI---PAHITKPKEHKKLFLVQLQEKALFAVPKNYK 192
           WV +  +  W  PN  PP+Y ++    AH    K+    FL +L      + P  YK
Sbjct: 329 WVQEHYLEYWEVPNSSPPRYEFLWGPRAHSESTKQKVLEFLAKLYNSIPISFPSWYK 385


>gi|4758410 fragile X mental retardation syndrome related protein 2
           [Homo sapiens]
          Length = 673

 Score = 29.6 bits (65), Expect = 2.2
 Identities = 28/102 (27%), Positives = 46/102 (45%), Gaps = 19/102 (18%)

Query: 55  EKDSSVAARFQRMREEF----DKIGMRRTVEGVLIVHEHRLPHVLLLQLG--TTFFKLPG 108
           E    +AA FQ   EEF    D +G+     G  I    ++P V  ++LG  T  F++ G
Sbjct: 220 ETSKQLAAAFQ---EEFTVREDLMGLAIGTHGANIQQARKVPGVTAIELGEETCTFRIYG 276

Query: 109 ----------GELNPGEDEVEGLKRLMTEILGRQDGVLQDWV 140
                       L   ED V+  + L+ +++G+   V+Q+ V
Sbjct: 277 ETPEACRQARSYLEFSEDSVQVPRNLVGKVIGKNGKVIQEIV 318


>gi|24308211 integrator complex subunit 2 [Homo sapiens]
          Length = 1204

 Score = 27.7 bits (60), Expect = 8.4
 Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 8/69 (11%)

Query: 160  YIPAHITKPKEHKKLFLVQLQEKAL--FAVPKNYKL------VAAPLFELYDNAPGYGPI 211
            +IP  I +P+  K++F +QL       +A+PK+  +      V   L  +   A  Y   
Sbjct: 1041 FIPELIAQPELEKQIFAIQLLSHLCIQYALPKSLSVARLAVNVMGTLLTVLTQAKRYAFF 1100

Query: 212  ISSLPQLLS 220
            + +LP L+S
Sbjct: 1101 MPTLPSLVS 1109


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.321    0.141    0.437 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,506,112
Number of Sequences: 37866
Number of extensions: 427432
Number of successful extensions: 886
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 884
Number of HSP's gapped (non-prelim): 8
length of query: 227
length of database: 18,247,518
effective HSP length: 99
effective length of query: 128
effective length of database: 14,498,784
effective search space: 1855844352
effective search space used: 1855844352
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.