Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 56682940
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|56682940 A kinase (PRKA) anchor protein 14 isoform c [Homo
sapiens]
(89 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|56682940 A kinase (PRKA) anchor protein 14 isoform c [Homo sa... 179 5e-46
gi|56682938 A kinase (PRKA) anchor protein 14 isoform b [Homo sa... 176 5e-45
gi|30520346 A kinase (PRKA) anchor protein 14 isoform a [Homo sa... 176 5e-45
gi|164663830 FGGY carbohydrate kinase domain containing isoform ... 31 0.18
gi|164663828 FGGY carbohydrate kinase domain containing isoform ... 31 0.18
gi|112382226 atrophin-1 like protein isoform b [Homo sapiens] 27 3.4
gi|112382224 atrophin-1 like protein isoform a [Homo sapiens] 27 3.4
gi|112382216 atrophin-1 like protein isoform a [Homo sapiens] 27 3.4
gi|45446749 kinesin family member 5A [Homo sapiens] 27 4.5
gi|208431757 KLRAQ motif containing 1 isoform 3 [Homo sapiens] 27 4.5
gi|24308420 KLRAQ motif containing 1 isoform 2 [Homo sapiens] 27 4.5
gi|208431754 KLRAQ motif containing 1 isoform 1 [Homo sapiens] 27 4.5
gi|87196339 collagen, type VI, alpha 1 precursor [Homo sapiens] 26 7.7
gi|150170718 zinc finger protein 292 [Homo sapiens] 26 7.7
>gi|56682940 A kinase (PRKA) anchor protein 14 isoform c [Homo
sapiens]
Length = 89
Score = 179 bits (453), Expect = 5e-46
Identities = 89/89 (100%), Positives = 89/89 (100%)
Query: 1 MSETQNSTSQKAMDEDNKAASQTMPNTQDKNYEDELTQVALALVEDVINYAVKIVEEERN 60
MSETQNSTSQKAMDEDNKAASQTMPNTQDKNYEDELTQVALALVEDVINYAVKIVEEERN
Sbjct: 1 MSETQNSTSQKAMDEDNKAASQTMPNTQDKNYEDELTQVALALVEDVINYAVKIVEEERN 60
Query: 61 PLKNIKWMTHGEFTVEKGLKQIDEYFSVS 89
PLKNIKWMTHGEFTVEKGLKQIDEYFSVS
Sbjct: 61 PLKNIKWMTHGEFTVEKGLKQIDEYFSVS 89
>gi|56682938 A kinase (PRKA) anchor protein 14 isoform b [Homo
sapiens]
Length = 137
Score = 176 bits (445), Expect = 5e-45
Identities = 87/87 (100%), Positives = 87/87 (100%)
Query: 1 MSETQNSTSQKAMDEDNKAASQTMPNTQDKNYEDELTQVALALVEDVINYAVKIVEEERN 60
MSETQNSTSQKAMDEDNKAASQTMPNTQDKNYEDELTQVALALVEDVINYAVKIVEEERN
Sbjct: 1 MSETQNSTSQKAMDEDNKAASQTMPNTQDKNYEDELTQVALALVEDVINYAVKIVEEERN 60
Query: 61 PLKNIKWMTHGEFTVEKGLKQIDEYFS 87
PLKNIKWMTHGEFTVEKGLKQIDEYFS
Sbjct: 61 PLKNIKWMTHGEFTVEKGLKQIDEYFS 87
>gi|30520346 A kinase (PRKA) anchor protein 14 isoform a [Homo
sapiens]
Length = 197
Score = 176 bits (445), Expect = 5e-45
Identities = 87/87 (100%), Positives = 87/87 (100%)
Query: 1 MSETQNSTSQKAMDEDNKAASQTMPNTQDKNYEDELTQVALALVEDVINYAVKIVEEERN 60
MSETQNSTSQKAMDEDNKAASQTMPNTQDKNYEDELTQVALALVEDVINYAVKIVEEERN
Sbjct: 1 MSETQNSTSQKAMDEDNKAASQTMPNTQDKNYEDELTQVALALVEDVINYAVKIVEEERN 60
Query: 61 PLKNIKWMTHGEFTVEKGLKQIDEYFS 87
PLKNIKWMTHGEFTVEKGLKQIDEYFS
Sbjct: 61 PLKNIKWMTHGEFTVEKGLKQIDEYFS 87
>gi|164663830 FGGY carbohydrate kinase domain containing isoform a
[Homo sapiens]
Length = 575
Score = 31.2 bits (69), Expect = 0.18
Identities = 17/41 (41%), Positives = 21/41 (51%)
Query: 10 QKAMDEDNKAASQTMPNTQDKNYEDELTQVALALVEDVINY 50
Q+AM + +K P QDK Y D+ QV L LVE Y
Sbjct: 528 QEAMAKMSKVGKVVFPRLQDKKYYDKKYQVFLKLVEHQKEY 568
>gi|164663828 FGGY carbohydrate kinase domain containing isoform b
[Homo sapiens]
Length = 551
Score = 31.2 bits (69), Expect = 0.18
Identities = 17/41 (41%), Positives = 21/41 (51%)
Query: 10 QKAMDEDNKAASQTMPNTQDKNYEDELTQVALALVEDVINY 50
Q+AM + +K P QDK Y D+ QV L LVE Y
Sbjct: 504 QEAMAKMSKVGKVVFPRLQDKKYYDKKYQVFLKLVEHQKEY 544
>gi|112382226 atrophin-1 like protein isoform b [Homo sapiens]
Length = 1012
Score = 26.9 bits (58), Expect = 3.4
Identities = 9/31 (29%), Positives = 20/31 (64%)
Query: 5 QNSTSQKAMDEDNKAASQTMPNTQDKNYEDE 35
+ S+ K +D+DN++ S ++P+ QD + +
Sbjct: 142 EGSSDPKDIDQDNRSTSPSIPSPQDNESDSD 172
>gi|112382224 atrophin-1 like protein isoform a [Homo sapiens]
Length = 1566
Score = 26.9 bits (58), Expect = 3.4
Identities = 9/31 (29%), Positives = 20/31 (64%)
Query: 5 QNSTSQKAMDEDNKAASQTMPNTQDKNYEDE 35
+ S+ K +D+DN++ S ++P+ QD + +
Sbjct: 696 EGSSDPKDIDQDNRSTSPSIPSPQDNESDSD 726
>gi|112382216 atrophin-1 like protein isoform a [Homo sapiens]
Length = 1566
Score = 26.9 bits (58), Expect = 3.4
Identities = 9/31 (29%), Positives = 20/31 (64%)
Query: 5 QNSTSQKAMDEDNKAASQTMPNTQDKNYEDE 35
+ S+ K +D+DN++ S ++P+ QD + +
Sbjct: 696 EGSSDPKDIDQDNRSTSPSIPSPQDNESDSD 726
>gi|45446749 kinesin family member 5A [Homo sapiens]
Length = 1032
Score = 26.6 bits (57), Expect = 4.5
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 16 DNKAASQTMPNTQDKN--YEDELTQVALALVEDVINYAVKIVEEERNPLKN 64
DN+ + + + Q +N +DE+ +V AL E +NY K E E +N
Sbjct: 462 DNEKVQRELSHLQSENDAAKDEVKEVLQALEELAVNYDQKSQEVEEKSQQN 512
>gi|208431757 KLRAQ motif containing 1 isoform 3 [Homo sapiens]
Length = 734
Score = 26.6 bits (57), Expect = 4.5
Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 8/61 (13%)
Query: 9 SQKAMDEDNKAASQTMPNTQD------KNYEDELTQVALALVEDVINYAVKIVEEERNPL 62
S++A+ E+ K ASQ + QD ++YED+L+ ++ L +N + EE + L
Sbjct: 663 SKEALTEEMKLASQNISRLQDELTTTKRSYEDQLSMMSDHLCS--MNETLSKQREEIDTL 720
Query: 63 K 63
K
Sbjct: 721 K 721
>gi|24308420 KLRAQ motif containing 1 isoform 2 [Homo sapiens]
Length = 769
Score = 26.6 bits (57), Expect = 4.5
Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 8/61 (13%)
Query: 9 SQKAMDEDNKAASQTMPNTQD------KNYEDELTQVALALVEDVINYAVKIVEEERNPL 62
S++A+ E+ K ASQ + QD ++YED+L+ ++ L +N + EE + L
Sbjct: 698 SKEALTEEMKLASQNISRLQDELTTTKRSYEDQLSMMSDHLCS--MNETLSKQREEIDTL 755
Query: 63 K 63
K
Sbjct: 756 K 756
>gi|208431754 KLRAQ motif containing 1 isoform 1 [Homo sapiens]
Length = 780
Score = 26.6 bits (57), Expect = 4.5
Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 8/61 (13%)
Query: 9 SQKAMDEDNKAASQTMPNTQD------KNYEDELTQVALALVEDVINYAVKIVEEERNPL 62
S++A+ E+ K ASQ + QD ++YED+L+ ++ L +N + EE + L
Sbjct: 709 SKEALTEEMKLASQNISRLQDELTTTKRSYEDQLSMMSDHLCS--MNETLSKQREEIDTL 766
Query: 63 K 63
K
Sbjct: 767 K 767
>gi|87196339 collagen, type VI, alpha 1 precursor [Homo sapiens]
Length = 1028
Score = 25.8 bits (55), Expect = 7.7
Identities = 9/26 (34%), Positives = 18/26 (69%)
Query: 51 AVKIVEEERNPLKNIKWMTHGEFTVE 76
+++ V+E + +K+++WM G FT E
Sbjct: 680 SIRNVQELKEAIKSLQWMAGGTFTGE 705
>gi|150170718 zinc finger protein 292 [Homo sapiens]
Length = 2723
Score = 25.8 bits (55), Expect = 7.7
Identities = 14/65 (21%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 2 SETQNSTSQKAMDEDNKAASQTMPNTQ-DKNYEDELTQVALALVEDVINYAVKIVEEERN 60
++ ++S + + DN + T+ + +KN +DE+ ++ + +IN VE + N
Sbjct: 2446 NDVKDSDTCVSESNDNSRTTATVSQKEVEKNEKDEMDELTELFITKLINEDSTSVETQAN 2505
Query: 61 PLKNI 65
N+
Sbjct: 2506 TSSNV 2510
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.305 0.121 0.322
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,853,727
Number of Sequences: 37866
Number of extensions: 95516
Number of successful extensions: 221
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 212
Number of HSP's gapped (non-prelim): 14
length of query: 89
length of database: 18,247,518
effective HSP length: 61
effective length of query: 28
effective length of database: 15,937,692
effective search space: 446255376
effective search space used: 446255376
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.