Search of human proteins with 5453884

Search of human proteins with 5453884

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|5453884 phytanoyl-CoA 2-hydroxylase isoform a precursor
[Homo sapiens]
         (338 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|5453884 phytanoyl-CoA 2-hydroxylase isoform a precursor [Homo...   699   0.0  
gi|83281447 phytanoyl-CoA 2-hydroxylase isoform b precursor [Hom...   503   e-143
gi|154937350 phytanoyl-CoA dioxygenase domain containing 1 isofo...    54   3e-07
gi|154937352 phytanoyl-CoA dioxygenase domain containing 1 isofo...    51   1e-06
gi|148529025 pleckstrin homology domain containing, family G (wi...    31   1.8  
gi|4557565 excision repair cross-complementing rodent repair def...    30   2.4  
gi|72534784 RIB43A domain with coiled-coils 1 isoform 1 [Homo sa...    30   4.0  
gi|21450659 RIB43A domain with coiled-coils 1 isoform 2 [Homo sa...    30   4.0  
gi|218777830 inositol hexakisphosphate kinase 3 [Homo sapiens]         29   6.8  
gi|55769530 inositol hexakisphosphate kinase 3 [Homo sapiens]          29   6.8  
gi|170763506 general transcription factor IIIC, polypeptide 5 is...    28   8.9  

>gi|5453884 phytanoyl-CoA 2-hydroxylase isoform a precursor [Homo
           sapiens]
          Length = 338

 Score =  699 bits (1805), Expect = 0.0
 Identities = 338/338 (100%), Positives = 338/338 (100%)

Query: 1   MEQLRAAARLQIVLGHLGRPSAGAVVAHPTSGTISSASFHPQQFQYTLDNNVLTLEQRKF 60
           MEQLRAAARLQIVLGHLGRPSAGAVVAHPTSGTISSASFHPQQFQYTLDNNVLTLEQRKF
Sbjct: 1   MEQLRAAARLQIVLGHLGRPSAGAVVAHPTSGTISSASFHPQQFQYTLDNNVLTLEQRKF 60

Query: 61  YEENGFLVIKNLVPDADIQRFRNEFEKICRKEVKPLGLTVMRDVTISKSEYAPSEKMITK 120
           YEENGFLVIKNLVPDADIQRFRNEFEKICRKEVKPLGLTVMRDVTISKSEYAPSEKMITK
Sbjct: 61  YEENGFLVIKNLVPDADIQRFRNEFEKICRKEVKPLGLTVMRDVTISKSEYAPSEKMITK 120

Query: 121 VQDFQEDKELFRYCTLPEILKYVECFTGPNIMAMHTMLINKPPDSGKKTSRHPLHQDLHY 180
           VQDFQEDKELFRYCTLPEILKYVECFTGPNIMAMHTMLINKPPDSGKKTSRHPLHQDLHY
Sbjct: 121 VQDFQEDKELFRYCTLPEILKYVECFTGPNIMAMHTMLINKPPDSGKKTSRHPLHQDLHY 180

Query: 181 FPFRPSDLIVCAWTAMEHISRNNGCLVVLPGTHKGSLKPHDYPKWEGGVNKMFHGIQDYE 240
           FPFRPSDLIVCAWTAMEHISRNNGCLVVLPGTHKGSLKPHDYPKWEGGVNKMFHGIQDYE
Sbjct: 181 FPFRPSDLIVCAWTAMEHISRNNGCLVVLPGTHKGSLKPHDYPKWEGGVNKMFHGIQDYE 240

Query: 241 ENKARVHLVMEKGDTVFFHPLLIHGSGQNKTQGFRKAISCHFASADCHYIDVKGTSQENI 300
           ENKARVHLVMEKGDTVFFHPLLIHGSGQNKTQGFRKAISCHFASADCHYIDVKGTSQENI
Sbjct: 241 ENKARVHLVMEKGDTVFFHPLLIHGSGQNKTQGFRKAISCHFASADCHYIDVKGTSQENI 300

Query: 301 EKEVVGIAHKFFGAENSVNLKDIWMFRARLVKGERTNL 338
           EKEVVGIAHKFFGAENSVNLKDIWMFRARLVKGERTNL
Sbjct: 301 EKEVVGIAHKFFGAENSVNLKDIWMFRARLVKGERTNL 338


>gi|83281447 phytanoyl-CoA 2-hydroxylase isoform b precursor [Homo
           sapiens]
          Length = 238

 Score =  503 bits (1295), Expect = e-143
 Identities = 238/238 (100%), Positives = 238/238 (100%)

Query: 101 MRDVTISKSEYAPSEKMITKVQDFQEDKELFRYCTLPEILKYVECFTGPNIMAMHTMLIN 160
           MRDVTISKSEYAPSEKMITKVQDFQEDKELFRYCTLPEILKYVECFTGPNIMAMHTMLIN
Sbjct: 1   MRDVTISKSEYAPSEKMITKVQDFQEDKELFRYCTLPEILKYVECFTGPNIMAMHTMLIN 60

Query: 161 KPPDSGKKTSRHPLHQDLHYFPFRPSDLIVCAWTAMEHISRNNGCLVVLPGTHKGSLKPH 220
           KPPDSGKKTSRHPLHQDLHYFPFRPSDLIVCAWTAMEHISRNNGCLVVLPGTHKGSLKPH
Sbjct: 61  KPPDSGKKTSRHPLHQDLHYFPFRPSDLIVCAWTAMEHISRNNGCLVVLPGTHKGSLKPH 120

Query: 221 DYPKWEGGVNKMFHGIQDYEENKARVHLVMEKGDTVFFHPLLIHGSGQNKTQGFRKAISC 280
           DYPKWEGGVNKMFHGIQDYEENKARVHLVMEKGDTVFFHPLLIHGSGQNKTQGFRKAISC
Sbjct: 121 DYPKWEGGVNKMFHGIQDYEENKARVHLVMEKGDTVFFHPLLIHGSGQNKTQGFRKAISC 180

Query: 281 HFASADCHYIDVKGTSQENIEKEVVGIAHKFFGAENSVNLKDIWMFRARLVKGERTNL 338
           HFASADCHYIDVKGTSQENIEKEVVGIAHKFFGAENSVNLKDIWMFRARLVKGERTNL
Sbjct: 181 HFASADCHYIDVKGTSQENIEKEVVGIAHKFFGAENSVNLKDIWMFRARLVKGERTNL 238


>gi|154937350 phytanoyl-CoA dioxygenase domain containing 1 isoform
           a [Homo sapiens]
          Length = 291

 Score = 53.5 bits (127), Expect = 3e-07
 Identities = 36/135 (26%), Positives = 58/135 (42%), Gaps = 4/135 (2%)

Query: 152 MAMHTMLINKPPDSGKKTSRHPLHQDLHYFPFRPSDLIVCAWTAMEHISRNNGCLVVLPG 211
           + + +M I K P  G + S H   QD  +    P   ++  W A+E  +  NGCL  +PG
Sbjct: 136 VVVQSMYIFKQPHFGGEVSPH---QDASFLYTEPLGRVLGVWIAVEDATLENGCLWFIPG 192

Query: 212 THKGSLKPHDYPKWEGGV-NKMFHGIQDYEENKARVHLVMEKGDTVFFHPLLIHGSGQNK 270
           +H   +         G      F G +   +N   V   +++G  V  H  ++H S QN 
Sbjct: 193 SHTSGVSRRMVRAPVGSAPGTSFLGSEPARDNSLFVPTPVQRGALVLIHGEVVHKSKQNL 252

Query: 271 TQGFRKAISCHFASA 285
           +   R+A + H   A
Sbjct: 253 SDRSRQAYTFHLMEA 267


>gi|154937352 phytanoyl-CoA dioxygenase domain containing 1 isoform
           c [Homo sapiens]
          Length = 270

 Score = 51.2 bits (121), Expect = 1e-06
 Identities = 33/132 (25%), Positives = 56/132 (42%), Gaps = 5/132 (3%)

Query: 155 HTMLINKPPDSGKKTSRHPLHQDLHYFPFRPSDLIVCAWTAMEHISRNNGCLVVLPGTHK 214
           H+  + +P   G+ +     HQD  +    P   ++  W A+E  +  NGCL  +PG+H 
Sbjct: 119 HSFKVQQPHFGGEVSP----HQDASFLYTEPLGRVLGVWIAVEDATLENGCLWFIPGSHT 174

Query: 215 GSLKPHDYPKWEGGV-NKMFHGIQDYEENKARVHLVMEKGDTVFFHPLLIHGSGQNKTQG 273
             +         G      F G +   +N   V   +++G  V  H  ++H S QN +  
Sbjct: 175 SGVSRRMVRAPVGSAPGTSFLGSEPARDNSLFVPTPVQRGALVLIHGEVVHKSKQNLSDR 234

Query: 274 FRKAISCHFASA 285
            R+A + H   A
Sbjct: 235 SRQAYTFHLMEA 246


>gi|148529025 pleckstrin homology domain containing, family G (with
           RhoGef domain) member 4B [Homo sapiens]
          Length = 1271

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 25/88 (28%), Positives = 36/88 (40%), Gaps = 17/88 (19%)

Query: 76  ADIQRFRNEFEKICRKEVKPLGLTVMRDVTISKSEYAPSEK-----------------MI 118
           A++ R    F  I RKEV+ LGL V+ D   S +  A S+                  ++
Sbjct: 234 AELTRLLLYFHSIPRKEVRDLGLVVLVDARRSPAAPAVSQALSGLQNNTSPIIHSILLLV 293

Query: 119 TKVQDFQEDKELFRYCTLPEILKYVECF 146
            K   F+ DK+    C +   LK V  F
Sbjct: 294 DKESAFRPDKDAIIQCEVVSSLKAVHKF 321


>gi|4557565 excision repair cross-complementing rodent repair
            deficiency, complementation group 6 [Homo sapiens]
          Length = 1493

 Score = 30.4 bits (67), Expect = 2.4
 Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 2/49 (4%)

Query: 30   TSGTISSASFHPQQFQYTLDNNVL-TLEQRKFYEENGFLVIKNLV-PDA 76
            T+GTI    +H Q F+  L N VL   +QR+F++ N    +  L  PDA
Sbjct: 964  TAGTIEEKIYHRQIFKQFLTNRVLKDPKQRRFFKSNDLYELFTLTSPDA 1012


>gi|72534784 RIB43A domain with coiled-coils 1 isoform 1 [Homo
           sapiens]
          Length = 379

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 27/115 (23%), Positives = 44/115 (38%), Gaps = 23/115 (20%)

Query: 58  RKFYEENGFLVIKNLVPDADIQRFRNEFEKICRKEVKPLG-------LTVMRDVTI---S 107
           R+   +N F  ++N V   D+Q   N+     R+E              V  DV +    
Sbjct: 22  REKERQNRFFNVRNRVMGVDVQALNNQVGDRKRREAAERSKEAAYGTSQVQYDVVVQMLE 81

Query: 108 KSEYAPSEKMITKVQDFQEDKELFR-------------YCTLPEILKYVECFTGP 149
           K E   + ++  KVQ+F+E K+  +             +  LP  L Y   + GP
Sbjct: 82  KEEADRTRQLAKKVQEFREQKQQLKNGREFSLWDPGQVWKGLPTYLSYSNTYPGP 136


>gi|21450659 RIB43A domain with coiled-coils 1 isoform 2 [Homo
           sapiens]
          Length = 192

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 27/115 (23%), Positives = 44/115 (38%), Gaps = 23/115 (20%)

Query: 58  RKFYEENGFLVIKNLVPDADIQRFRNEFEKICRKEVKPLG-------LTVMRDVTI---S 107
           R+   +N F  ++N V   D+Q   N+     R+E              V  DV +    
Sbjct: 22  REKERQNRFFNVRNRVMGVDVQALNNQVGDRKRREAAERSKEAAYGTSQVQYDVVVQMLE 81

Query: 108 KSEYAPSEKMITKVQDFQEDKELFR-------------YCTLPEILKYVECFTGP 149
           K E   + ++  KVQ+F+E K+  +             +  LP  L Y   + GP
Sbjct: 82  KEEADRTRQLAKKVQEFREQKQQLKNGREFSLWDPGQVWKGLPTYLSYSNTYPGP 136


>gi|218777830 inositol hexakisphosphate kinase 3 [Homo sapiens]
          Length = 410

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 19/89 (21%), Positives = 39/89 (43%), Gaps = 8/89 (8%)

Query: 238 DYEENKARVHLVMEKGDTVFFHPLLI--------HGSGQNKTQGFRKAISCHFASADCHY 289
           +Y ENK    L++E   + + HP ++        HG   ++ +  R    C  +++ C  
Sbjct: 189 EYPENKRHRFLLLENVVSQYTHPCVLDLKMGTRQHGDDASEEKKARHMRKCAQSTSACLG 248

Query: 290 IDVKGTSQENIEKEVVGIAHKFFGAENSV 318
           + + G      +K+      K++G + SV
Sbjct: 249 VRICGMQVYQTDKKYFLCKDKYYGRKLSV 277


>gi|55769530 inositol hexakisphosphate kinase 3 [Homo sapiens]
          Length = 410

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 19/89 (21%), Positives = 39/89 (43%), Gaps = 8/89 (8%)

Query: 238 DYEENKARVHLVMEKGDTVFFHPLLI--------HGSGQNKTQGFRKAISCHFASADCHY 289
           +Y ENK    L++E   + + HP ++        HG   ++ +  R    C  +++ C  
Sbjct: 189 EYPENKRHRFLLLENVVSQYTHPCVLDLKMGTRQHGDDASEEKKARHMRKCAQSTSACLG 248

Query: 290 IDVKGTSQENIEKEVVGIAHKFFGAENSV 318
           + + G      +K+      K++G + SV
Sbjct: 249 VRICGMQVYQTDKKYFLCKDKYYGRKLSV 277


>gi|170763506 general transcription factor IIIC, polypeptide 5
           isoform 2 [Homo sapiens]
          Length = 519

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 24/74 (32%), Positives = 31/74 (41%), Gaps = 12/74 (16%)

Query: 262 LIHGSGQNKTQGFRKAISCHFASADCHYIDVKGTSQE-----------NIEKEVVGIAHK 310
           L  G G + T G RK  S  +   D  YI  +G               N+E E+  I H+
Sbjct: 366 LKQGLGPSGTSGARKPASSKYKLKDSVYIFREGALPPYRQMFYQLCDLNVE-ELQKIIHR 424

Query: 311 FFGAENSVNLKDIW 324
             GAENS   +D W
Sbjct: 425 NDGAENSCTERDGW 438


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.321    0.137    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,381,504
Number of Sequences: 37866
Number of extensions: 601560
Number of successful extensions: 1165
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1159
Number of HSP's gapped (non-prelim): 11
length of query: 338
length of database: 18,247,518
effective HSP length: 103
effective length of query: 235
effective length of database: 14,347,320
effective search space: 3371620200
effective search space used: 3371620200
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.