Guide to the Human Genome
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Search of human proteins with 51896031

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|51896031 hypothetical protein LOC285636 [Homo sapiens]
         (294 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|51896031 hypothetical protein LOC285636 [Homo sapiens]             600   e-172
gi|190194412 thyroid hormone receptor interactor 11 [Homo sapiens]     33   0.30 
gi|71361682 nuclear mitotic apparatus protein 1 [Homo sapiens]         31   1.5  
gi|114842389 myosin, heavy polypeptide 7B, cardiac muscle, beta ...    30   1.9  
gi|40254823 SH2 containing inositol phosphatase isoform b [Homo ...    30   1.9  
gi|64085167 SH2 containing inositol phosphatase isoform a [Homo ...    30   1.9  
gi|46409260 hypothetical protein LOC90288 [Homo sapiens]               30   3.3  
gi|149999378 inverted formin 2 isoform 2 [Homo sapiens]                29   4.3  
gi|149999380 inverted formin 2 isoform 1 [Homo sapiens]                29   4.3  
gi|27545313 ubiquitin specific peptidase 38 [Homo sapiens]             29   5.7  
gi|239755913 PREDICTED: hypothetical protein [Homo sapiens]            28   7.4  
gi|239750427 PREDICTED: hypothetical protein XP_002347392 [Homo ...    28   7.4  
gi|239744729 PREDICTED: hypothetical protein XP_002343255 [Homo ...    28   7.4  
gi|63999117 hypothetical protein LOC126123 [Homo sapiens]              28   7.4  
gi|38348729 hypothetical protein LOC203238 [Homo sapiens]              28   9.6  

>gi|51896031 hypothetical protein LOC285636 [Homo sapiens]
          Length = 294

 Score =  600 bits (1547), Expect = e-172
 Identities = 294/294 (100%), Positives = 294/294 (100%)

Query: 1   MAAAVSSVVRRVEELGDLAQAHIQQLSEAAGEDDHFLIRASAALEKLKLLCGEEKECSNP 60
           MAAAVSSVVRRVEELGDLAQAHIQQLSEAAGEDDHFLIRASAALEKLKLLCGEEKECSNP
Sbjct: 1   MAAAVSSVVRRVEELGDLAQAHIQQLSEAAGEDDHFLIRASAALEKLKLLCGEEKECSNP 60

Query: 61  SNLLELYTQAILDMTYFEENKLVDEDFPEDSSSQKVKELISFLSEPEILVKENNMHPKHC 120
           SNLLELYTQAILDMTYFEENKLVDEDFPEDSSSQKVKELISFLSEPEILVKENNMHPKHC
Sbjct: 61  SNLLELYTQAILDMTYFEENKLVDEDFPEDSSSQKVKELISFLSEPEILVKENNMHPKHC 120

Query: 121 NLLGDELLECLSWRRGALLYMYCHSLTKRREWLLRKSSLLKKYLLDGISYLLQMLNYRCP 180
           NLLGDELLECLSWRRGALLYMYCHSLTKRREWLLRKSSLLKKYLLDGISYLLQMLNYRCP
Sbjct: 121 NLLGDELLECLSWRRGALLYMYCHSLTKRREWLLRKSSLLKKYLLDGISYLLQMLNYRCP 180

Query: 181 IQLNEGVSFQDLDTAKLLSAGIFSDIHLLAMMYSGEMCYWGSKYCADQQPENHEVDTSVS 240
           IQLNEGVSFQDLDTAKLLSAGIFSDIHLLAMMYSGEMCYWGSKYCADQQPENHEVDTSVS
Sbjct: 181 IQLNEGVSFQDLDTAKLLSAGIFSDIHLLAMMYSGEMCYWGSKYCADQQPENHEVDTSVS 240

Query: 241 GAGCTTYKEPLDFREVGEKILKKYVSVCEGPLKEQEWNTTNAKQILNFFHHRCN 294
           GAGCTTYKEPLDFREVGEKILKKYVSVCEGPLKEQEWNTTNAKQILNFFHHRCN
Sbjct: 241 GAGCTTYKEPLDFREVGEKILKKYVSVCEGPLKEQEWNTTNAKQILNFFHHRCN 294


>gi|190194412 thyroid hormone receptor interactor 11 [Homo sapiens]
          Length = 1979

 Score = 33.1 bits (74), Expect = 0.30
 Identities = 38/139 (27%), Positives = 59/139 (42%), Gaps = 14/139 (10%)

Query: 2   AAAVSSVVRRVEELGDLAQAHIQQLSE-----AAGEDDHFLIRASAALEKLKLLCGEEKE 56
           +A+V  V R  + L D A+  I +LS      +  ED+  L      LEK K L  +EKE
Sbjct: 381 SASVEEVFRLQQALSD-AENEIMRLSSLNQDNSLAEDNLKLKMRIEVLEKEKSLLSQEKE 439

Query: 57  CSNPSNLLELYTQAILDMTYFEENKLVDE--------DFPEDSSSQKVKELISFLSEPEI 108
               S L       ++  T   +  L  E        +  E   +Q + E  + ++E E 
Sbjct: 440 ELQMSLLKLNNEYEVIKSTATRDISLDSELHDLRLNLEAKEQELNQSISEKETLIAEIEE 499

Query: 109 LVKENNMHPKHCNLLGDEL 127
           L ++N    KH  L+ D+L
Sbjct: 500 LDRQNQEATKHMILIKDQL 518


>gi|71361682 nuclear mitotic apparatus protein 1 [Homo sapiens]
          Length = 2115

 Score = 30.8 bits (68), Expect = 1.5
 Identities = 28/101 (27%), Positives = 49/101 (48%), Gaps = 10/101 (9%)

Query: 6   SSVVRRVEELGDLA-------QAHIQQLSEAAGEDDHFLIRASAALEKLKLLCGEEKECS 58
           SS+ ++ ++L ++A       Q H QQL+ AA E +  L    AAL++L+ L   EKE +
Sbjct: 558 SSLKQKEQQLKEVAEKQEATRQDHAQQLATAAEEREASLRERDAALKQLEAL---EKEKA 614

Query: 59  NPSNLLELYTQAILDMTYFEENKLVDEDFPEDSSSQKVKEL 99
               +L+   Q   +     +  +      +   S+KV+EL
Sbjct: 615 AKLEILQQQLQVANEARDSAQTSVTQAQREKAELSRKVEEL 655


>gi|114842389 myosin, heavy polypeptide 7B, cardiac muscle, beta [Homo
            sapiens]
          Length = 1983

 Score = 30.4 bits (67), Expect = 1.9
 Identities = 28/121 (23%), Positives = 52/121 (42%), Gaps = 9/121 (7%)

Query: 1    MAAAVSSVVRRVEELGDLAQAHIQQLSEAAGEDDHF------LIRASAALEKLKLLCGEE 54
            MAA   SV R  +E   L +AH Q L +   E+D         +R    +E L+    +E
Sbjct: 1031 MAALDESVARLTKEKKALQEAHQQALGDLQAEEDRVSALTKAKLRLEQQVEDLECSLEQE 1090

Query: 55   KECSNPSNLLELYTQAILDMTYFEENKLVDEDFPEDSSSQKVKELISFLSEPEILVKENN 114
            K+    +   +   +  L +T   +  + D    +    +K+K+  S LS+  + V++  
Sbjct: 1091 KKLRMDTERAKRKLEGDLKLT---QESVADAAQDKQQLEEKLKKKDSELSQLSLRVEDEQ 1147

Query: 115  M 115
            +
Sbjct: 1148 L 1148


>gi|40254823 SH2 containing inositol phosphatase isoform b [Homo
          sapiens]
          Length = 1188

 Score = 30.4 bits (67), Expect = 1.9
 Identities = 12/42 (28%), Positives = 24/42 (57%)

Query: 16 GDLAQAHIQQLSEAAGEDDHFLIRASAALEKLKLLCGEEKEC 57
          G++ ++  ++L    G+D  FL+RAS ++ +   LC   + C
Sbjct: 8  GNITRSKAEELLSRTGKDGSFLVRASESISRAYALCVLYRNC 49


>gi|64085167 SH2 containing inositol phosphatase isoform a [Homo
          sapiens]
          Length = 1189

 Score = 30.4 bits (67), Expect = 1.9
 Identities = 12/42 (28%), Positives = 24/42 (57%)

Query: 16 GDLAQAHIQQLSEAAGEDDHFLIRASAALEKLKLLCGEEKEC 57
          G++ ++  ++L    G+D  FL+RAS ++ +   LC   + C
Sbjct: 8  GNITRSKAEELLSRTGKDGSFLVRASESISRAYALCVLYRNC 49


>gi|46409260 hypothetical protein LOC90288 [Homo sapiens]
          Length = 572

 Score = 29.6 bits (65), Expect = 3.3
 Identities = 45/174 (25%), Positives = 74/174 (42%), Gaps = 21/174 (12%)

Query: 24  QQLSEAAGEDDHFLIRASAALEKLKLLCGEEKECSNPSNL--LELYTQAILDMTYFEENK 81
           QQ S  A   +H+++       K  L   +++E  +   L  ++L T   +D T  E   
Sbjct: 269 QQRSSLATAREHYILAKHRDSLKGPL---KKQEVDSAPQLPKVDLLTVPAVD-TQMETRP 324

Query: 82  LVDEDFPEDSSSQKVKELISFLSEPEI-------LVKENNMH-PKHC---NLLGD--ELL 128
           +  E+  E     + ++    L+ P I       LV+  N H  +HC    + GD  EL+
Sbjct: 325 MTLEEMEEVGKRYRERQRQHKLTIPSIQYTEQCHLVRCGNRHFDEHCLPSTIHGDMRELI 384

Query: 129 ECLSWRRGALLYMYCHSLTKRREWLLRKSSLLKKYLLDGISYLLQMLNYRCPIQ 182
           +    R   L+Y+ C  L K     L +  L+K  L  G   + QM +  CPI+
Sbjct: 385 DSAR-RHNFLVYLQCWKLCKSYGLPLTEDILMKALLYPGDKIIFQM-DKVCPIR 436


>gi|149999378 inverted formin 2 isoform 2 [Homo sapiens]
          Length = 1240

 Score = 29.3 bits (64), Expect = 4.3
 Identities = 25/83 (30%), Positives = 44/83 (53%), Gaps = 5/83 (6%)

Query: 23  IQQLSEAAGEDDHFLIRASAALEKLKLLCGEEKECSNPSNLLELYTQAILDMTYFEENKL 82
           ++Q S+AAG +   +IR+ A+    KLL  E K  ++ + + E YT+ +         + 
Sbjct: 822 LEQPSQAAGINLE-IIRSEASSNLKKLLETERKVSASVAEVQEQYTERL--QASISAFRA 878

Query: 83  VDEDFPEDSSSQKVKELISFLSE 105
           +DE F  ++  QK +EL  +L E
Sbjct: 879 LDELF--EAIEQKQRELADYLCE 899


>gi|149999380 inverted formin 2 isoform 1 [Homo sapiens]
          Length = 1249

 Score = 29.3 bits (64), Expect = 4.3
 Identities = 25/83 (30%), Positives = 44/83 (53%), Gaps = 5/83 (6%)

Query: 23  IQQLSEAAGEDDHFLIRASAALEKLKLLCGEEKECSNPSNLLELYTQAILDMTYFEENKL 82
           ++Q S+AAG +   +IR+ A+    KLL  E K  ++ + + E YT+ +         + 
Sbjct: 822 LEQPSQAAGINLE-IIRSEASSNLKKLLETERKVSASVAEVQEQYTERL--QASISAFRA 878

Query: 83  VDEDFPEDSSSQKVKELISFLSE 105
           +DE F  ++  QK +EL  +L E
Sbjct: 879 LDELF--EAIEQKQRELADYLCE 899


>gi|27545313 ubiquitin specific peptidase 38 [Homo sapiens]
          Length = 1042

 Score = 28.9 bits (63), Expect = 5.7
 Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 5/70 (7%)

Query: 54  EKECSNPSNLLELYTQAILDMTYFEENKLVDEDFPEDSSSQ---KVKELISFLSEPEILV 110
           EK   +P N  E Y      +       LV++D P+    +    V +L+++   PEIL 
Sbjct: 675 EKTIGSPPN--EFYCSENTSVPNESNKILVNKDVPQKPGGETTPSVTDLLNYFLAPEILT 732

Query: 111 KENNMHPKHC 120
            +N  + ++C
Sbjct: 733 GDNQYYCENC 742


>gi|239755913 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 340

 Score = 28.5 bits (62), Expect = 7.4
 Identities = 32/144 (22%), Positives = 55/144 (38%), Gaps = 26/144 (18%)

Query: 11  RVEELGDLAQAHIQQLSEAAGEDDHFLI----RASAALEKLKLLCGEEKECSNPSNLLEL 66
           RV +L +L  + I    EAA  D   L       S   E+L+ +CG +      + LLE 
Sbjct: 36  RVTDLAELP-SEILGAPEAADTDLEILTFETKNPSELAERLRSVCGNQSNAY--ARLLEY 92

Query: 67  YTQAILDMTYFEENKLVDEDFPEDSSSQKVKELI----SFLSEPE--------------- 107
              A+  +   +    ++E    +SS  +    +      L +PE               
Sbjct: 93  RLNALRGLWNAQRQLALEEQHERESSGDEETLALLKRQGLLQQPEQAPFTSRMGLLLVFP 152

Query: 108 ILVKENNMHPKHCNLLGDELLECL 131
           ++  ++   P  CN+  + LL CL
Sbjct: 153 LIQSQSRTDPSLCNITAEVLLNCL 176


>gi|239750427 PREDICTED: hypothetical protein XP_002347392 [Homo
           sapiens]
          Length = 340

 Score = 28.5 bits (62), Expect = 7.4
 Identities = 32/144 (22%), Positives = 55/144 (38%), Gaps = 26/144 (18%)

Query: 11  RVEELGDLAQAHIQQLSEAAGEDDHFLI----RASAALEKLKLLCGEEKECSNPSNLLEL 66
           RV +L +L  + I    EAA  D   L       S   E+L+ +CG +      + LLE 
Sbjct: 36  RVTDLAELP-SEILGAPEAADTDLEILTFETKNPSELAERLRSVCGNQSNAY--ARLLEY 92

Query: 67  YTQAILDMTYFEENKLVDEDFPEDSSSQKVKELI----SFLSEPE--------------- 107
              A+  +   +    ++E    +SS  +    +      L +PE               
Sbjct: 93  RLNALRGLWNAQRQLALEEQHERESSGDEETLALLKRQGLLQQPEQAPFTSRMGLLLVFP 152

Query: 108 ILVKENNMHPKHCNLLGDELLECL 131
           ++  ++   P  CN+  + LL CL
Sbjct: 153 LIQSQSRTDPSLCNITAEVLLNCL 176


>gi|239744729 PREDICTED: hypothetical protein XP_002343255 [Homo
           sapiens]
          Length = 340

 Score = 28.5 bits (62), Expect = 7.4
 Identities = 32/144 (22%), Positives = 55/144 (38%), Gaps = 26/144 (18%)

Query: 11  RVEELGDLAQAHIQQLSEAAGEDDHFLI----RASAALEKLKLLCGEEKECSNPSNLLEL 66
           RV +L +L  + I    EAA  D   L       S   E+L+ +CG +      + LLE 
Sbjct: 36  RVTDLAELP-SEILGAPEAADTDLEILTFETKNPSELAERLRSVCGNQSNAY--ARLLEY 92

Query: 67  YTQAILDMTYFEENKLVDEDFPEDSSSQKVKELI----SFLSEPE--------------- 107
              A+  +   +    ++E    +SS  +    +      L +PE               
Sbjct: 93  RLNALRGLWNAQRQLALEEQHERESSGDEETLALLKRQGLLQQPEQAPFTSRMGLLLVFP 152

Query: 108 ILVKENNMHPKHCNLLGDELLECL 131
           ++  ++   P  CN+  + LL CL
Sbjct: 153 LIQSQSRTDPSLCNITAEVLLNCL 176


>gi|63999117 hypothetical protein LOC126123 [Homo sapiens]
          Length = 221

 Score = 28.5 bits (62), Expect = 7.4
 Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 2/76 (2%)

Query: 61  SNLLELYTQAILDMT-YFEENKLVDEDFPEDSSSQKVKELISFLSEPEILVKENNMHPKH 119
           +N L+L    + + T +   N L DE   E+  + +   +  F  +  I  +    +PK 
Sbjct: 79  TNQLDLVASFVKNQTQHLMGNSLKDEPLLEELVTLRANVIKEF-KKVLISYELKACNPKL 137

Query: 120 CNLLGDELLECLSWRR 135
           C LL +E+L+CL  +R
Sbjct: 138 CRLLKEEVLDCLHCQR 153


>gi|38348729 hypothetical protein LOC203238 [Homo sapiens]
          Length = 1326

 Score = 28.1 bits (61), Expect = 9.6
 Identities = 38/144 (26%), Positives = 62/144 (43%), Gaps = 23/144 (15%)

Query: 17  DLAQAHIQQLSEAAGEDDHFLIRASAALEKLKLLCGEEKECSNP-----SNLLELYTQA- 70
           ++ Q  I+ L  A   +      A A LE +K    E KE  +       N  E + +  
Sbjct: 302 EIIQLRIRDLEGALQVEKASQAEAVADLEIIK---NEFKEVESAYEREKHNAQESFAKLN 358

Query: 71  ILDMTYFEENKLVDEDFPEDSSSQKVKELISFLSEPEILVKENNMHPKHCNLLGDELLEC 130
           +L+  YF +NK ++ED  E       K++I  LS      K    + K C+ L +EL+  
Sbjct: 359 LLEKEYFSKNKKLNEDIEEQ------KKVIIDLS------KRLQYNEKSCSELQEELV-- 404

Query: 131 LSWRRGALLYMYCHSLTKRREWLL 154
           ++ +  A L   C +  K  E +L
Sbjct: 405 MAKKHQAFLVETCENNVKELESIL 428


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.318    0.134    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,178,248
Number of Sequences: 37866
Number of extensions: 490931
Number of successful extensions: 1223
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1219
Number of HSP's gapped (non-prelim): 16
length of query: 294
length of database: 18,247,518
effective HSP length: 101
effective length of query: 193
effective length of database: 14,423,052
effective search space: 2783649036
effective search space used: 2783649036
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
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