BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|51896031 hypothetical protein LOC285636 [Homo sapiens] (294 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|51896031 hypothetical protein LOC285636 [Homo sapiens] 600 e-172 gi|190194412 thyroid hormone receptor interactor 11 [Homo sapiens] 33 0.30 gi|71361682 nuclear mitotic apparatus protein 1 [Homo sapiens] 31 1.5 gi|114842389 myosin, heavy polypeptide 7B, cardiac muscle, beta ... 30 1.9 gi|40254823 SH2 containing inositol phosphatase isoform b [Homo ... 30 1.9 gi|64085167 SH2 containing inositol phosphatase isoform a [Homo ... 30 1.9 gi|46409260 hypothetical protein LOC90288 [Homo sapiens] 30 3.3 gi|149999378 inverted formin 2 isoform 2 [Homo sapiens] 29 4.3 gi|149999380 inverted formin 2 isoform 1 [Homo sapiens] 29 4.3 gi|27545313 ubiquitin specific peptidase 38 [Homo sapiens] 29 5.7 gi|239755913 PREDICTED: hypothetical protein [Homo sapiens] 28 7.4 gi|239750427 PREDICTED: hypothetical protein XP_002347392 [Homo ... 28 7.4 gi|239744729 PREDICTED: hypothetical protein XP_002343255 [Homo ... 28 7.4 gi|63999117 hypothetical protein LOC126123 [Homo sapiens] 28 7.4 gi|38348729 hypothetical protein LOC203238 [Homo sapiens] 28 9.6 >gi|51896031 hypothetical protein LOC285636 [Homo sapiens] Length = 294 Score = 600 bits (1547), Expect = e-172 Identities = 294/294 (100%), Positives = 294/294 (100%) Query: 1 MAAAVSSVVRRVEELGDLAQAHIQQLSEAAGEDDHFLIRASAALEKLKLLCGEEKECSNP 60 MAAAVSSVVRRVEELGDLAQAHIQQLSEAAGEDDHFLIRASAALEKLKLLCGEEKECSNP Sbjct: 1 MAAAVSSVVRRVEELGDLAQAHIQQLSEAAGEDDHFLIRASAALEKLKLLCGEEKECSNP 60 Query: 61 SNLLELYTQAILDMTYFEENKLVDEDFPEDSSSQKVKELISFLSEPEILVKENNMHPKHC 120 SNLLELYTQAILDMTYFEENKLVDEDFPEDSSSQKVKELISFLSEPEILVKENNMHPKHC Sbjct: 61 SNLLELYTQAILDMTYFEENKLVDEDFPEDSSSQKVKELISFLSEPEILVKENNMHPKHC 120 Query: 121 NLLGDELLECLSWRRGALLYMYCHSLTKRREWLLRKSSLLKKYLLDGISYLLQMLNYRCP 180 NLLGDELLECLSWRRGALLYMYCHSLTKRREWLLRKSSLLKKYLLDGISYLLQMLNYRCP Sbjct: 121 NLLGDELLECLSWRRGALLYMYCHSLTKRREWLLRKSSLLKKYLLDGISYLLQMLNYRCP 180 Query: 181 IQLNEGVSFQDLDTAKLLSAGIFSDIHLLAMMYSGEMCYWGSKYCADQQPENHEVDTSVS 240 IQLNEGVSFQDLDTAKLLSAGIFSDIHLLAMMYSGEMCYWGSKYCADQQPENHEVDTSVS Sbjct: 181 IQLNEGVSFQDLDTAKLLSAGIFSDIHLLAMMYSGEMCYWGSKYCADQQPENHEVDTSVS 240 Query: 241 GAGCTTYKEPLDFREVGEKILKKYVSVCEGPLKEQEWNTTNAKQILNFFHHRCN 294 GAGCTTYKEPLDFREVGEKILKKYVSVCEGPLKEQEWNTTNAKQILNFFHHRCN Sbjct: 241 GAGCTTYKEPLDFREVGEKILKKYVSVCEGPLKEQEWNTTNAKQILNFFHHRCN 294 >gi|190194412 thyroid hormone receptor interactor 11 [Homo sapiens] Length = 1979 Score = 33.1 bits (74), Expect = 0.30 Identities = 38/139 (27%), Positives = 59/139 (42%), Gaps = 14/139 (10%) Query: 2 AAAVSSVVRRVEELGDLAQAHIQQLSE-----AAGEDDHFLIRASAALEKLKLLCGEEKE 56 +A+V V R + L D A+ I +LS + ED+ L LEK K L +EKE Sbjct: 381 SASVEEVFRLQQALSD-AENEIMRLSSLNQDNSLAEDNLKLKMRIEVLEKEKSLLSQEKE 439 Query: 57 CSNPSNLLELYTQAILDMTYFEENKLVDE--------DFPEDSSSQKVKELISFLSEPEI 108 S L ++ T + L E + E +Q + E + ++E E Sbjct: 440 ELQMSLLKLNNEYEVIKSTATRDISLDSELHDLRLNLEAKEQELNQSISEKETLIAEIEE 499 Query: 109 LVKENNMHPKHCNLLGDEL 127 L ++N KH L+ D+L Sbjct: 500 LDRQNQEATKHMILIKDQL 518 >gi|71361682 nuclear mitotic apparatus protein 1 [Homo sapiens] Length = 2115 Score = 30.8 bits (68), Expect = 1.5 Identities = 28/101 (27%), Positives = 49/101 (48%), Gaps = 10/101 (9%) Query: 6 SSVVRRVEELGDLA-------QAHIQQLSEAAGEDDHFLIRASAALEKLKLLCGEEKECS 58 SS+ ++ ++L ++A Q H QQL+ AA E + L AAL++L+ L EKE + Sbjct: 558 SSLKQKEQQLKEVAEKQEATRQDHAQQLATAAEEREASLRERDAALKQLEAL---EKEKA 614 Query: 59 NPSNLLELYTQAILDMTYFEENKLVDEDFPEDSSSQKVKEL 99 +L+ Q + + + + S+KV+EL Sbjct: 615 AKLEILQQQLQVANEARDSAQTSVTQAQREKAELSRKVEEL 655 >gi|114842389 myosin, heavy polypeptide 7B, cardiac muscle, beta [Homo sapiens] Length = 1983 Score = 30.4 bits (67), Expect = 1.9 Identities = 28/121 (23%), Positives = 52/121 (42%), Gaps = 9/121 (7%) Query: 1 MAAAVSSVVRRVEELGDLAQAHIQQLSEAAGEDDHF------LIRASAALEKLKLLCGEE 54 MAA SV R +E L +AH Q L + E+D +R +E L+ +E Sbjct: 1031 MAALDESVARLTKEKKALQEAHQQALGDLQAEEDRVSALTKAKLRLEQQVEDLECSLEQE 1090 Query: 55 KECSNPSNLLELYTQAILDMTYFEENKLVDEDFPEDSSSQKVKELISFLSEPEILVKENN 114 K+ + + + L +T + + D + +K+K+ S LS+ + V++ Sbjct: 1091 KKLRMDTERAKRKLEGDLKLT---QESVADAAQDKQQLEEKLKKKDSELSQLSLRVEDEQ 1147 Query: 115 M 115 + Sbjct: 1148 L 1148 >gi|40254823 SH2 containing inositol phosphatase isoform b [Homo sapiens] Length = 1188 Score = 30.4 bits (67), Expect = 1.9 Identities = 12/42 (28%), Positives = 24/42 (57%) Query: 16 GDLAQAHIQQLSEAAGEDDHFLIRASAALEKLKLLCGEEKEC 57 G++ ++ ++L G+D FL+RAS ++ + LC + C Sbjct: 8 GNITRSKAEELLSRTGKDGSFLVRASESISRAYALCVLYRNC 49 >gi|64085167 SH2 containing inositol phosphatase isoform a [Homo sapiens] Length = 1189 Score = 30.4 bits (67), Expect = 1.9 Identities = 12/42 (28%), Positives = 24/42 (57%) Query: 16 GDLAQAHIQQLSEAAGEDDHFLIRASAALEKLKLLCGEEKEC 57 G++ ++ ++L G+D FL+RAS ++ + LC + C Sbjct: 8 GNITRSKAEELLSRTGKDGSFLVRASESISRAYALCVLYRNC 49 >gi|46409260 hypothetical protein LOC90288 [Homo sapiens] Length = 572 Score = 29.6 bits (65), Expect = 3.3 Identities = 45/174 (25%), Positives = 74/174 (42%), Gaps = 21/174 (12%) Query: 24 QQLSEAAGEDDHFLIRASAALEKLKLLCGEEKECSNPSNL--LELYTQAILDMTYFEENK 81 QQ S A +H+++ K L +++E + L ++L T +D T E Sbjct: 269 QQRSSLATAREHYILAKHRDSLKGPL---KKQEVDSAPQLPKVDLLTVPAVD-TQMETRP 324 Query: 82 LVDEDFPEDSSSQKVKELISFLSEPEI-------LVKENNMH-PKHC---NLLGD--ELL 128 + E+ E + ++ L+ P I LV+ N H +HC + GD EL+ Sbjct: 325 MTLEEMEEVGKRYRERQRQHKLTIPSIQYTEQCHLVRCGNRHFDEHCLPSTIHGDMRELI 384 Query: 129 ECLSWRRGALLYMYCHSLTKRREWLLRKSSLLKKYLLDGISYLLQMLNYRCPIQ 182 + R L+Y+ C L K L + L+K L G + QM + CPI+ Sbjct: 385 DSAR-RHNFLVYLQCWKLCKSYGLPLTEDILMKALLYPGDKIIFQM-DKVCPIR 436 >gi|149999378 inverted formin 2 isoform 2 [Homo sapiens] Length = 1240 Score = 29.3 bits (64), Expect = 4.3 Identities = 25/83 (30%), Positives = 44/83 (53%), Gaps = 5/83 (6%) Query: 23 IQQLSEAAGEDDHFLIRASAALEKLKLLCGEEKECSNPSNLLELYTQAILDMTYFEENKL 82 ++Q S+AAG + +IR+ A+ KLL E K ++ + + E YT+ + + Sbjct: 822 LEQPSQAAGINLE-IIRSEASSNLKKLLETERKVSASVAEVQEQYTERL--QASISAFRA 878 Query: 83 VDEDFPEDSSSQKVKELISFLSE 105 +DE F ++ QK +EL +L E Sbjct: 879 LDELF--EAIEQKQRELADYLCE 899 >gi|149999380 inverted formin 2 isoform 1 [Homo sapiens] Length = 1249 Score = 29.3 bits (64), Expect = 4.3 Identities = 25/83 (30%), Positives = 44/83 (53%), Gaps = 5/83 (6%) Query: 23 IQQLSEAAGEDDHFLIRASAALEKLKLLCGEEKECSNPSNLLELYTQAILDMTYFEENKL 82 ++Q S+AAG + +IR+ A+ KLL E K ++ + + E YT+ + + Sbjct: 822 LEQPSQAAGINLE-IIRSEASSNLKKLLETERKVSASVAEVQEQYTERL--QASISAFRA 878 Query: 83 VDEDFPEDSSSQKVKELISFLSE 105 +DE F ++ QK +EL +L E Sbjct: 879 LDELF--EAIEQKQRELADYLCE 899 >gi|27545313 ubiquitin specific peptidase 38 [Homo sapiens] Length = 1042 Score = 28.9 bits (63), Expect = 5.7 Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 5/70 (7%) Query: 54 EKECSNPSNLLELYTQAILDMTYFEENKLVDEDFPEDSSSQ---KVKELISFLSEPEILV 110 EK +P N E Y + LV++D P+ + V +L+++ PEIL Sbjct: 675 EKTIGSPPN--EFYCSENTSVPNESNKILVNKDVPQKPGGETTPSVTDLLNYFLAPEILT 732 Query: 111 KENNMHPKHC 120 +N + ++C Sbjct: 733 GDNQYYCENC 742 >gi|239755913 PREDICTED: hypothetical protein [Homo sapiens] Length = 340 Score = 28.5 bits (62), Expect = 7.4 Identities = 32/144 (22%), Positives = 55/144 (38%), Gaps = 26/144 (18%) Query: 11 RVEELGDLAQAHIQQLSEAAGEDDHFLI----RASAALEKLKLLCGEEKECSNPSNLLEL 66 RV +L +L + I EAA D L S E+L+ +CG + + LLE Sbjct: 36 RVTDLAELP-SEILGAPEAADTDLEILTFETKNPSELAERLRSVCGNQSNAY--ARLLEY 92 Query: 67 YTQAILDMTYFEENKLVDEDFPEDSSSQKVKELI----SFLSEPE--------------- 107 A+ + + ++E +SS + + L +PE Sbjct: 93 RLNALRGLWNAQRQLALEEQHERESSGDEETLALLKRQGLLQQPEQAPFTSRMGLLLVFP 152 Query: 108 ILVKENNMHPKHCNLLGDELLECL 131 ++ ++ P CN+ + LL CL Sbjct: 153 LIQSQSRTDPSLCNITAEVLLNCL 176 >gi|239750427 PREDICTED: hypothetical protein XP_002347392 [Homo sapiens] Length = 340 Score = 28.5 bits (62), Expect = 7.4 Identities = 32/144 (22%), Positives = 55/144 (38%), Gaps = 26/144 (18%) Query: 11 RVEELGDLAQAHIQQLSEAAGEDDHFLI----RASAALEKLKLLCGEEKECSNPSNLLEL 66 RV +L +L + I EAA D L S E+L+ +CG + + LLE Sbjct: 36 RVTDLAELP-SEILGAPEAADTDLEILTFETKNPSELAERLRSVCGNQSNAY--ARLLEY 92 Query: 67 YTQAILDMTYFEENKLVDEDFPEDSSSQKVKELI----SFLSEPE--------------- 107 A+ + + ++E +SS + + L +PE Sbjct: 93 RLNALRGLWNAQRQLALEEQHERESSGDEETLALLKRQGLLQQPEQAPFTSRMGLLLVFP 152 Query: 108 ILVKENNMHPKHCNLLGDELLECL 131 ++ ++ P CN+ + LL CL Sbjct: 153 LIQSQSRTDPSLCNITAEVLLNCL 176 >gi|239744729 PREDICTED: hypothetical protein XP_002343255 [Homo sapiens] Length = 340 Score = 28.5 bits (62), Expect = 7.4 Identities = 32/144 (22%), Positives = 55/144 (38%), Gaps = 26/144 (18%) Query: 11 RVEELGDLAQAHIQQLSEAAGEDDHFLI----RASAALEKLKLLCGEEKECSNPSNLLEL 66 RV +L +L + I EAA D L S E+L+ +CG + + LLE Sbjct: 36 RVTDLAELP-SEILGAPEAADTDLEILTFETKNPSELAERLRSVCGNQSNAY--ARLLEY 92 Query: 67 YTQAILDMTYFEENKLVDEDFPEDSSSQKVKELI----SFLSEPE--------------- 107 A+ + + ++E +SS + + L +PE Sbjct: 93 RLNALRGLWNAQRQLALEEQHERESSGDEETLALLKRQGLLQQPEQAPFTSRMGLLLVFP 152 Query: 108 ILVKENNMHPKHCNLLGDELLECL 131 ++ ++ P CN+ + LL CL Sbjct: 153 LIQSQSRTDPSLCNITAEVLLNCL 176 >gi|63999117 hypothetical protein LOC126123 [Homo sapiens] Length = 221 Score = 28.5 bits (62), Expect = 7.4 Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 2/76 (2%) Query: 61 SNLLELYTQAILDMT-YFEENKLVDEDFPEDSSSQKVKELISFLSEPEILVKENNMHPKH 119 +N L+L + + T + N L DE E+ + + + F + I + +PK Sbjct: 79 TNQLDLVASFVKNQTQHLMGNSLKDEPLLEELVTLRANVIKEF-KKVLISYELKACNPKL 137 Query: 120 CNLLGDELLECLSWRR 135 C LL +E+L+CL +R Sbjct: 138 CRLLKEEVLDCLHCQR 153 >gi|38348729 hypothetical protein LOC203238 [Homo sapiens] Length = 1326 Score = 28.1 bits (61), Expect = 9.6 Identities = 38/144 (26%), Positives = 62/144 (43%), Gaps = 23/144 (15%) Query: 17 DLAQAHIQQLSEAAGEDDHFLIRASAALEKLKLLCGEEKECSNP-----SNLLELYTQA- 70 ++ Q I+ L A + A A LE +K E KE + N E + + Sbjct: 302 EIIQLRIRDLEGALQVEKASQAEAVADLEIIK---NEFKEVESAYEREKHNAQESFAKLN 358 Query: 71 ILDMTYFEENKLVDEDFPEDSSSQKVKELISFLSEPEILVKENNMHPKHCNLLGDELLEC 130 +L+ YF +NK ++ED E K++I LS K + K C+ L +EL+ Sbjct: 359 LLEKEYFSKNKKLNEDIEEQ------KKVIIDLS------KRLQYNEKSCSELQEELV-- 404 Query: 131 LSWRRGALLYMYCHSLTKRREWLL 154 ++ + A L C + K E +L Sbjct: 405 MAKKHQAFLVETCENNVKELESIL 428 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.318 0.134 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 11,178,248 Number of Sequences: 37866 Number of extensions: 490931 Number of successful extensions: 1223 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 12 Number of HSP's that attempted gapping in prelim test: 1219 Number of HSP's gapped (non-prelim): 16 length of query: 294 length of database: 18,247,518 effective HSP length: 101 effective length of query: 193 effective length of database: 14,423,052 effective search space: 2783649036 effective search space used: 2783649036 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.