Guide to the Human Genome
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Name: LOC100287871 Sequence: fasta or formatted (340aa) NCBI GI: 239744729
Description:

PREDICTED: hypothetical protein XP_002343255

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.6         36          11
 C cysteine            2.4          8           1
 D aspartate           4.1         14           1
 E glutamate           8.2         28           2
 F phenylalanine       2.6          9           1
 G glycine             5.6         19           1
 H histidine           2.6          9           1
 I isoleucine          3.2         11           1
 K lysine              4.4         15           2
 L leucine            15.0         51           3
 M methionine          0.9          3           1
 N asparagine          3.8         13           1
 P proline             5.0         17           3
 Q glutamine           5.6         19           2
 R arginine            5.0         17           1
 S serine              7.4         25           2
 T threonine           5.3         18           1
 V valine              5.6         19           1
 W tryptophan          1.5          5           1
 Y tyrosine            1.2          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343255 
LOC100293988          1.000   PREDICTED: hypothetical protein 
LOC100291425          1.000   PREDICTED: hypothetical protein XP_002347392 
MYCBP2                0.031   MYC binding protein 2 
HERC1                 0.031   guanine nucleotide exchange factor p532 
CCDC142               0.008   coiled-coil domain containing 142 
SLC27A6               0.008   solute carrier family 27 (fatty acid transporter), m...
SLC27A6               0.008   solute carrier family 27 (fatty acid transporter), m...
EPSTI1                0.008   epithelial stromal interaction 1 isoform 2 
CABC1                 0.008   chaperone, ABC1 activity of bc1 complex like precurs...
OR2AK2                0.008   olfactory receptor, family 2, subfamily AK, member 2...
GFAP                  0.008   glial fibrillary acidic protein isoform 2 
GFAP                  0.008   glial fibrillary acidic protein isoform 1 
PDE3B                 0.006   phosphodiesterase 3B 
LOC100293987          0.006   PREDICTED: hypothetical protein 
LOC100291032          0.006   PREDICTED: hypothetical protein XP_002346774 
LOC100288074          0.006   PREDICTED: hypothetical protein XP_002342608 
KIAA1274              0.006   KIAA1274 
MMRN2                 0.006   multimerin 2 precursor 
C5orf51               0.005   hypothetical protein LOC285636 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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