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Search of human proteins with 13376737
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|13376737 coenzyme Q10 homolog B [Homo sapiens]
(238 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|13376737 coenzyme Q10 homolog B [Homo sapiens] 488 e-138
gi|151101384 coenzyme Q10 homolog A isoform a [Homo sapiens] 300 6e-82
gi|151101386 coenzyme Q10 homolog A isoform b [Homo sapiens] 296 1e-80
gi|5802988 B-cell translocation gene 2 [Homo sapiens] 30 2.4
gi|239742285 PREDICTED: hypothetical protein XP_002342486 [Homo ... 29 4.1
gi|6912338 dynein, axonemal, intermediate chain 1 [Homo sapiens] 28 7.0
gi|169217654 PREDICTED: similar to deubiquitinating enzyme DUB1 ... 28 9.1
gi|239758075 PREDICTED: similar to deubiquitinating enzyme DUB1 ... 28 9.1
gi|113415490 PREDICTED: similar to deubiquitinating enzyme 1 [Ho... 28 9.1
gi|113415488 PREDICTED: similar to deubiquitinating enzyme 1 [Ho... 28 9.1
gi|113415486 PREDICTED: similar to deubiquitinating enzyme 1 [Ho... 28 9.1
gi|113415484 PREDICTED: similar to deubiquitinating enzyme 1 [Ho... 28 9.1
gi|113415482 PREDICTED: Ubiquitin carboxyl-terminal hydrolase 17... 28 9.1
gi|113415480 PREDICTED: similar to deubiquitinating enzyme 1 [Ho... 28 9.1
gi|113415478 PREDICTED: similar to deubiquitinating enzyme 1 [Ho... 28 9.1
gi|113415476 PREDICTED: similar to deubiquitinating enzyme 3 [Ho... 28 9.1
gi|239742297 PREDICTED: hypothetical protein XP_002342480 [Homo ... 28 9.1
gi|239742293 PREDICTED: hypothetical protein XP_002342478 [Homo ... 28 9.1
gi|239742291 PREDICTED: hypothetical protein XP_002342477 [Homo ... 28 9.1
gi|239742289 PREDICTED: hypothetical protein XP_002342476 [Homo ... 28 9.1
gi|239742287 PREDICTED: hypothetical protein XP_002342475 [Homo ... 28 9.1
gi|239742282 PREDICTED: hypothetical protein XP_002342474 [Homo ... 28 9.1
gi|239742278 PREDICTED: hypothetical protein XP_002342472 [Homo ... 28 9.1
gi|157785653 ubiquitin specific peptidase 17 [Homo sapiens] 28 9.1
>gi|13376737 coenzyme Q10 homolog B [Homo sapiens]
Length = 238
Score = 488 bits (1257), Expect = e-138
Identities = 238/238 (100%), Positives = 238/238 (100%)
Query: 1 MAARTGHTALRRVVSGCRPKSATAAGAQAPVRNGRYLASCGILMSRTLPLHTSILPKEIC 60
MAARTGHTALRRVVSGCRPKSATAAGAQAPVRNGRYLASCGILMSRTLPLHTSILPKEIC
Sbjct: 1 MAARTGHTALRRVVSGCRPKSATAAGAQAPVRNGRYLASCGILMSRTLPLHTSILPKEIC 60
Query: 61 ARTFFKITAPLINKRKEYSERRILGYSMQEMYDVVSGVEDYKHFVPWCKKSDVISKRSGY 120
ARTFFKITAPLINKRKEYSERRILGYSMQEMYDVVSGVEDYKHFVPWCKKSDVISKRSGY
Sbjct: 61 ARTFFKITAPLINKRKEYSERRILGYSMQEMYDVVSGVEDYKHFVPWCKKSDVISKRSGY 120
Query: 121 CKTRLEIGFPPVLERYTSVVTLVKPHLVKASCTDGRLFNHLETIWRFSPGLPGYPRTCTL 180
CKTRLEIGFPPVLERYTSVVTLVKPHLVKASCTDGRLFNHLETIWRFSPGLPGYPRTCTL
Sbjct: 121 CKTRLEIGFPPVLERYTSVVTLVKPHLVKASCTDGRLFNHLETIWRFSPGLPGYPRTCTL 180
Query: 181 DFSISFEFRSLLHSQLATLFFDEVVKQMVAAFERRACKLYGPETNIPRELMLHEVHHT 238
DFSISFEFRSLLHSQLATLFFDEVVKQMVAAFERRACKLYGPETNIPRELMLHEVHHT
Sbjct: 181 DFSISFEFRSLLHSQLATLFFDEVVKQMVAAFERRACKLYGPETNIPRELMLHEVHHT 238
>gi|151101384 coenzyme Q10 homolog A isoform a [Homo sapiens]
Length = 247
Score = 300 bits (769), Expect = 6e-82
Identities = 150/226 (66%), Positives = 173/226 (76%), Gaps = 9/226 (3%)
Query: 16 GCRPKSATAAGAQAPVRNGRYLASCGILMSRTLPLHTSILPKEI---CARTFFKITAPLI 72
G +P A G P R R+L SC +L LP IL E +R+F AP
Sbjct: 28 GAQP--APPPGPLPPPRPMRFLTSCSLL----LPRAAQILAAEAGLPSSRSFMGFAAPFT 81
Query: 73 NKRKEYSERRILGYSMQEMYDVVSGVEDYKHFVPWCKKSDVISKRSGYCKTRLEIGFPPV 132
NKRK YSERRI+GYSMQEMY+VVS V++Y+ FVPWCKKS V+S R G+ K +LE+GFPPV
Sbjct: 82 NKRKAYSERRIMGYSMQEMYEVVSNVQEYREFVPWCKKSLVVSSRKGHLKAQLEVGFPPV 141
Query: 133 LERYTSVVTLVKPHLVKASCTDGRLFNHLETIWRFSPGLPGYPRTCTLDFSISFEFRSLL 192
+ERYTS V++VKPH+VKA CTDG+LFNHLETIWRFSPG+P YPRTCT+DFSISFEFRSLL
Sbjct: 142 MERYTSAVSMVKPHMVKAVCTDGKLFNHLETIWRFSPGIPAYPRTCTVDFSISFEFRSLL 201
Query: 193 HSQLATLFFDEVVKQMVAAFERRACKLYGPETNIPRELMLHEVHHT 238
HSQLAT+FFDEVVKQ VAAFERRA +GPET IPRELM HEVH T
Sbjct: 202 HSQLATMFFDEVVKQNVAAFERRAATKFGPETAIPRELMFHEVHQT 247
>gi|151101386 coenzyme Q10 homolog A isoform b [Homo sapiens]
Length = 215
Score = 296 bits (758), Expect = 1e-80
Identities = 146/214 (68%), Positives = 169/214 (78%), Gaps = 10/214 (4%)
Query: 31 VRNGRY---LASCGILMSRTLPLHTSILPKEI---CARTFFKITAPLINKRKEYSERRIL 84
VR G++ L SC +L LP IL E +R+F AP NKRK YSERRI+
Sbjct: 6 VREGKFSGFLTSCSLL----LPRAAQILAAEAGLPSSRSFMGFAAPFTNKRKAYSERRIM 61
Query: 85 GYSMQEMYDVVSGVEDYKHFVPWCKKSDVISKRSGYCKTRLEIGFPPVLERYTSVVTLVK 144
GYSMQEMY+VVS V++Y+ FVPWCKKS V+S R G+ K +LE+GFPPV+ERYTS V++VK
Sbjct: 62 GYSMQEMYEVVSNVQEYREFVPWCKKSLVVSSRKGHLKAQLEVGFPPVMERYTSAVSMVK 121
Query: 145 PHLVKASCTDGRLFNHLETIWRFSPGLPGYPRTCTLDFSISFEFRSLLHSQLATLFFDEV 204
PH+VKA CTDG+LFNHLETIWRFSPG+P YPRTCT+DFSISFEFRSLLHSQLAT+FFDEV
Sbjct: 122 PHMVKAVCTDGKLFNHLETIWRFSPGIPAYPRTCTVDFSISFEFRSLLHSQLATMFFDEV 181
Query: 205 VKQMVAAFERRACKLYGPETNIPRELMLHEVHHT 238
VKQ VAAFERRA +GPET IPRELM HEVH T
Sbjct: 182 VKQNVAAFERRAATKFGPETAIPRELMFHEVHQT 215
>gi|5802988 B-cell translocation gene 2 [Homo sapiens]
Length = 158
Score = 29.6 bits (65), Expect = 2.4
Identities = 32/98 (32%), Positives = 45/98 (45%), Gaps = 14/98 (14%)
Query: 52 TSILPKEICARTFFKITAPLINKRKEYSERRILGYS--MQEMYDVVSGVEDYKHFVPWCK 109
T +LP EI A F + L+ R SE+R+ +S +QE E YKH W
Sbjct: 7 TDMLP-EIAAAVGF--LSSLLRTRGCVSEQRLKVFSGALQEAL-----TEHYKHH--WFP 56
Query: 110 KSDVISKRSGYCKTRLEIGFPPVLERYTSVVTLVKPHL 147
+ SK SGY R+ P++ R S + L +P L
Sbjct: 57 EKP--SKGSGYRCIRINHKMDPIISRVASQIGLSQPQL 92
>gi|239742285 PREDICTED: hypothetical protein XP_002342486 [Homo
sapiens]
Length = 559
Score = 28.9 bits (63), Expect = 4.1
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
Query: 33 NGRYLASCGILM-----SRTLPLHTSILPKEICARTFFKITAPLINKRKEYSE 80
NG CG+ + S+TL LHTS + + F +T I+K +Y E
Sbjct: 247 NGENAYHCGVCLQRAPASKTLTLHTSAKVLILVLKRFSDVTGNKIDKNVQYPE 299
>gi|6912338 dynein, axonemal, intermediate chain 1 [Homo sapiens]
Length = 699
Score = 28.1 bits (61), Expect = 7.0
Identities = 21/98 (21%), Positives = 40/98 (40%), Gaps = 10/98 (10%)
Query: 138 SVVTLVKPHLVKASCTDGRLFNHLETIWRFSPGLPGYPRTCTLDFSISFEFRSLLHSQLA 197
++ L KPH + C+ + H + +W+ + FS+S + R + +
Sbjct: 409 AIYNLKKPHSQPSFCSSAKSGKHSDPVWQVKWQKDDMDQNLNF-FSVSSDGRIVSWT--- 464
Query: 198 TLFFDEVVKQMVAAFERRACKLYGPETNIPRELMLHEV 235
+VK+ + + K+ G T +P L LH V
Sbjct: 465 ------LVKRKLVHIDVIKLKVEGSTTEVPEGLQLHPV 496
>gi|169217654 PREDICTED: similar to deubiquitinating enzyme DUB1
[Homo sapiens]
Length = 530
Score = 27.7 bits (60), Expect = 9.1
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 5/53 (9%)
Query: 33 NGRYLASCGILM-----SRTLPLHTSILPKEICARTFFKITAPLINKRKEYSE 80
NG CG+ + S+TL LHTS + + F +T I K +Y E
Sbjct: 247 NGENAYHCGVCLQRAPASKTLTLHTSAKVLILVLKRFSDVTGNKIAKNVQYPE 299
>gi|239758075 PREDICTED: similar to deubiquitinating enzyme DUB1
[Homo sapiens]
Length = 530
Score = 27.7 bits (60), Expect = 9.1
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 5/53 (9%)
Query: 33 NGRYLASCGILM-----SRTLPLHTSILPKEICARTFFKITAPLINKRKEYSE 80
NG CG+ + S+TL LHTS + + F +T I K +Y E
Sbjct: 247 NGENAYHCGVCLQRAPASKTLTLHTSAKVLILVLKRFSDVTGNKIAKNVQYPE 299
>gi|113415490 PREDICTED: similar to deubiquitinating enzyme 1 [Homo
sapiens]
Length = 530
Score = 27.7 bits (60), Expect = 9.1
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 5/53 (9%)
Query: 33 NGRYLASCGILM-----SRTLPLHTSILPKEICARTFFKITAPLINKRKEYSE 80
NG CG+ + S+TL LHTS + + F +T I K +Y E
Sbjct: 247 NGENAYHCGVCLQRAPASKTLTLHTSAKVLILVLKRFSDVTGNKIAKNVQYPE 299
>gi|113415488 PREDICTED: similar to deubiquitinating enzyme 1 [Homo
sapiens]
Length = 530
Score = 27.7 bits (60), Expect = 9.1
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 5/53 (9%)
Query: 33 NGRYLASCGILM-----SRTLPLHTSILPKEICARTFFKITAPLINKRKEYSE 80
NG CG+ + S+TL LHTS + + F +T I K +Y E
Sbjct: 247 NGENAYHCGVCLQRAPASKTLTLHTSAKVLILVLKRFSDVTGNKIAKNVQYPE 299
>gi|113415486 PREDICTED: similar to deubiquitinating enzyme 1 [Homo
sapiens]
Length = 530
Score = 27.7 bits (60), Expect = 9.1
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 5/53 (9%)
Query: 33 NGRYLASCGILM-----SRTLPLHTSILPKEICARTFFKITAPLINKRKEYSE 80
NG CG+ + S+TL LHTS + + F +T I K +Y E
Sbjct: 247 NGENAYHCGVCLQRAPASKTLTLHTSAKVLILVLKRFSDVTGNKIAKNVQYPE 299
>gi|113415484 PREDICTED: similar to deubiquitinating enzyme 1 [Homo
sapiens]
Length = 530
Score = 27.7 bits (60), Expect = 9.1
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 5/53 (9%)
Query: 33 NGRYLASCGILM-----SRTLPLHTSILPKEICARTFFKITAPLINKRKEYSE 80
NG CG+ + S+TL LHTS + + F +T I K +Y E
Sbjct: 247 NGENAYHCGVCLQRAPASKTLTLHTSAKVLILVLKRFSDVTGNKIAKNVQYPE 299
>gi|113415482 PREDICTED: Ubiquitin carboxyl-terminal hydrolase
17-like protein 5 [Homo sapiens]
Length = 530
Score = 27.7 bits (60), Expect = 9.1
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 5/53 (9%)
Query: 33 NGRYLASCGILM-----SRTLPLHTSILPKEICARTFFKITAPLINKRKEYSE 80
NG CG+ + S+TL LHTS + + F +T I K +Y E
Sbjct: 247 NGENAYHCGVCLQRAPASKTLTLHTSAKVLILVLKRFSDVTGNKIAKNVQYPE 299
>gi|113415480 PREDICTED: similar to deubiquitinating enzyme 1 [Homo
sapiens]
Length = 530
Score = 27.7 bits (60), Expect = 9.1
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 5/53 (9%)
Query: 33 NGRYLASCGILM-----SRTLPLHTSILPKEICARTFFKITAPLINKRKEYSE 80
NG CG+ + S+TL LHTS + + F +T I K +Y E
Sbjct: 247 NGENAYHCGVCLQRAPASKTLTLHTSAKVLILVLKRFSDVTGNKIAKNVQYPE 299
>gi|113415478 PREDICTED: similar to deubiquitinating enzyme 1 [Homo
sapiens]
Length = 530
Score = 27.7 bits (60), Expect = 9.1
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 5/53 (9%)
Query: 33 NGRYLASCGILM-----SRTLPLHTSILPKEICARTFFKITAPLINKRKEYSE 80
NG CG+ + S+TL LHTS + + F +T I K +Y E
Sbjct: 247 NGENAYHCGVCLQRAPASKTLTLHTSAKVLILVLKRFSDVTGNKIAKNVQYPE 299
>gi|113415476 PREDICTED: similar to deubiquitinating enzyme 3 [Homo
sapiens]
Length = 530
Score = 27.7 bits (60), Expect = 9.1
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 5/53 (9%)
Query: 33 NGRYLASCGILM-----SRTLPLHTSILPKEICARTFFKITAPLINKRKEYSE 80
NG CG+ + S+TL LHTS + + F +T I K +Y E
Sbjct: 247 NGENAYHCGVCLQRAPASKTLTLHTSAKVLILVLKRFSDVTGNKIAKNVQYPE 299
>gi|239742297 PREDICTED: hypothetical protein XP_002342480 [Homo
sapiens]
Length = 530
Score = 27.7 bits (60), Expect = 9.1
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 5/53 (9%)
Query: 33 NGRYLASCGILM-----SRTLPLHTSILPKEICARTFFKITAPLINKRKEYSE 80
NG CG+ + S+TL LHTS + + F +T I K +Y E
Sbjct: 247 NGENAYHCGVCLQRAPASKTLTLHTSAKVLILVLKRFSDVTGNKIAKNVQYPE 299
>gi|239742293 PREDICTED: hypothetical protein XP_002342478 [Homo
sapiens]
Length = 530
Score = 27.7 bits (60), Expect = 9.1
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 5/53 (9%)
Query: 33 NGRYLASCGILM-----SRTLPLHTSILPKEICARTFFKITAPLINKRKEYSE 80
NG CG+ + S+TL LHTS + + F +T I K +Y E
Sbjct: 247 NGENAYHCGVCLQRAPASKTLTLHTSAKVLILVLKRFSDVTGNKIAKNVQYPE 299
>gi|239742291 PREDICTED: hypothetical protein XP_002342477 [Homo
sapiens]
Length = 530
Score = 27.7 bits (60), Expect = 9.1
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 5/53 (9%)
Query: 33 NGRYLASCGILM-----SRTLPLHTSILPKEICARTFFKITAPLINKRKEYSE 80
NG CG+ + S+TL LHTS + + F +T I K +Y E
Sbjct: 247 NGENAYHCGVCLQRAPASKTLTLHTSAKVLILVLKRFSDVTGNKIAKNVQYPE 299
>gi|239742289 PREDICTED: hypothetical protein XP_002342476 [Homo
sapiens]
Length = 530
Score = 27.7 bits (60), Expect = 9.1
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 5/53 (9%)
Query: 33 NGRYLASCGILM-----SRTLPLHTSILPKEICARTFFKITAPLINKRKEYSE 80
NG CG+ + S+TL LHTS + + F +T I K +Y E
Sbjct: 247 NGENAYHCGVCLQRAPASKTLTLHTSAKVLILVLKRFSDVTGNKIAKNVQYPE 299
>gi|239742287 PREDICTED: hypothetical protein XP_002342475 [Homo
sapiens]
Length = 530
Score = 27.7 bits (60), Expect = 9.1
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 5/53 (9%)
Query: 33 NGRYLASCGILM-----SRTLPLHTSILPKEICARTFFKITAPLINKRKEYSE 80
NG CG+ + S+TL LHTS + + F +T I K +Y E
Sbjct: 247 NGENAYHCGVCLQRAPASKTLTLHTSAKVLILVLKRFSDVTGNKIAKNVQYPE 299
>gi|239742282 PREDICTED: hypothetical protein XP_002342474 [Homo
sapiens]
Length = 530
Score = 27.7 bits (60), Expect = 9.1
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 5/53 (9%)
Query: 33 NGRYLASCGILM-----SRTLPLHTSILPKEICARTFFKITAPLINKRKEYSE 80
NG CG+ + S+TL LHTS + + F +T I K +Y E
Sbjct: 247 NGENAYHCGVCLQRAPASKTLTLHTSAKVLILVLKRFSDVTGNKIAKNVQYPE 299
>gi|239742278 PREDICTED: hypothetical protein XP_002342472 [Homo
sapiens]
Length = 530
Score = 27.7 bits (60), Expect = 9.1
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 5/53 (9%)
Query: 33 NGRYLASCGILM-----SRTLPLHTSILPKEICARTFFKITAPLINKRKEYSE 80
NG CG+ + S+TL LHTS + + F +T I K +Y E
Sbjct: 247 NGENAYHCGVCLQRAPASKTLTLHTSAKVLILVLKRFSDVTGNKIAKNVQYPE 299
>gi|157785653 ubiquitin specific peptidase 17 [Homo sapiens]
Length = 530
Score = 27.7 bits (60), Expect = 9.1
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 5/53 (9%)
Query: 33 NGRYLASCGILM-----SRTLPLHTSILPKEICARTFFKITAPLINKRKEYSE 80
NG CG+ + S+TL LHTS + + F +T I K +Y E
Sbjct: 247 NGENAYHCGVCLQRAPASKTLTLHTSAKVLILVLKRFSDVTGNKIAKNVQYPE 299
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.325 0.137 0.425
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,296,115
Number of Sequences: 37866
Number of extensions: 385107
Number of successful extensions: 1034
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 1030
Number of HSP's gapped (non-prelim): 24
length of query: 238
length of database: 18,247,518
effective HSP length: 99
effective length of query: 139
effective length of database: 14,498,784
effective search space: 2015330976
effective search space used: 2015330976
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.