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Search of human proteins with 51479141
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|51479141 ATP synthase, H+ transporting, mitochondrial F0
complex, subunit F6 isoform b precursor [Homo sapiens]
(116 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|51479141 ATP synthase, H+ transporting, mitochondrial F0 comp... 232 4e-62
gi|51479143 ATP synthase, H+ transporting, mitochondrial F0 comp... 214 2e-56
gi|51479139 ATP synthase, H+ transporting, mitochondrial F0 comp... 214 2e-56
gi|51479137 ATP synthase, H+ transporting, mitochondrial F0 comp... 214 2e-56
gi|18644883 ATP synthase, H+ transporting, mitochondrial F0 comp... 214 2e-56
gi|98986453 myosin, heavy chain 3, skeletal muscle, embryonic [H... 35 0.017
gi|115496169 myosin, heavy chain 7, cardiac muscle, beta [Homo s... 33 0.048
gi|156104908 myosin heavy chain 6 [Homo sapiens] 33 0.048
gi|153945790 myosin, heavy chain 8, skeletal muscle, perinatal [... 31 0.18
gi|115527082 myosin, heavy chain 1, skeletal muscle, adult [Homo... 31 0.24
gi|45827806 atlastin 3 [Homo sapiens] 31 0.24
gi|110611903 myosin, heavy polypeptide 4, skeletal muscle [Homo ... 31 0.24
gi|41349495 DNA primase polypeptide 2 [Homo sapiens] 30 0.41
gi|153791586 myosin, heavy chain 2, skeletal muscle, adult [Homo... 30 0.54
gi|153792663 myosin, heavy chain 2, skeletal muscle, adult [Homo... 30 0.54
gi|5453780 nuclear transcription factor Y, beta [Homo sapiens] 29 0.70
gi|110624781 myosin, heavy polypeptide 13, skeletal muscle [Homo... 29 0.91
gi|47157325 protein kinase C, delta [Homo sapiens] 28 2.0
gi|31377782 protein kinase C, delta [Homo sapiens] 28 2.0
gi|26638659 mitochondrial ribosomal protein L40 [Homo sapiens] 28 2.0
gi|150010558 myosin, heavy polypeptide 15 [Homo sapiens] 27 2.7
gi|21071077 dishevelled-associated activator of morphogenesis 1 ... 27 3.5
gi|68163411 activated leukocyte cell adhesion molecule [Homo sap... 27 4.5
gi|190343023 ATP-binding cassette, sub-family C, member 6 isofor... 26 5.9
gi|239756495 PREDICTED: hypothetical protein [Homo sapiens] 26 5.9
gi|50845418 WNK lysine deficient protein kinase 3 isoform 1 [Hom... 26 7.7
gi|50845416 WNK lysine deficient protein kinase 3 isoform 2 [Hom... 26 7.7
gi|4507171 secreted protein, acidic, cysteine-rich [Homo sapiens] 26 7.7
gi|225579127 Sin3A-associated protein, 130kDa isoform a [Homo sa... 26 7.7
>gi|51479141 ATP synthase, H+ transporting, mitochondrial F0
complex, subunit F6 isoform b precursor [Homo sapiens]
Length = 116
Score = 232 bits (592), Expect = 4e-62
Identities = 116/116 (100%), Positives = 116/116 (100%)
Query: 1 MHCDGGISMILQRLFRFSSVIRSAVSVHLRRNIGVTAVAFNKELDPIQKLFVDKIREYKS 60
MHCDGGISMILQRLFRFSSVIRSAVSVHLRRNIGVTAVAFNKELDPIQKLFVDKIREYKS
Sbjct: 1 MHCDGGISMILQRLFRFSSVIRSAVSVHLRRNIGVTAVAFNKELDPIQKLFVDKIREYKS 60
Query: 61 KRQTSGGPVDASSEYQQELERELFKLKQMFGNADMNTFPTFKFEDPKFEVIEKPQA 116
KRQTSGGPVDASSEYQQELERELFKLKQMFGNADMNTFPTFKFEDPKFEVIEKPQA
Sbjct: 61 KRQTSGGPVDASSEYQQELERELFKLKQMFGNADMNTFPTFKFEDPKFEVIEKPQA 116
>gi|51479143 ATP synthase, H+ transporting, mitochondrial F0
complex, subunit F6 isoform a precursor [Homo sapiens]
Length = 108
Score = 214 bits (544), Expect = 2e-56
Identities = 108/108 (100%), Positives = 108/108 (100%)
Query: 9 MILQRLFRFSSVIRSAVSVHLRRNIGVTAVAFNKELDPIQKLFVDKIREYKSKRQTSGGP 68
MILQRLFRFSSVIRSAVSVHLRRNIGVTAVAFNKELDPIQKLFVDKIREYKSKRQTSGGP
Sbjct: 1 MILQRLFRFSSVIRSAVSVHLRRNIGVTAVAFNKELDPIQKLFVDKIREYKSKRQTSGGP 60
Query: 69 VDASSEYQQELERELFKLKQMFGNADMNTFPTFKFEDPKFEVIEKPQA 116
VDASSEYQQELERELFKLKQMFGNADMNTFPTFKFEDPKFEVIEKPQA
Sbjct: 61 VDASSEYQQELERELFKLKQMFGNADMNTFPTFKFEDPKFEVIEKPQA 108
>gi|51479139 ATP synthase, H+ transporting, mitochondrial F0
complex, subunit F6 isoform a precursor [Homo sapiens]
Length = 108
Score = 214 bits (544), Expect = 2e-56
Identities = 108/108 (100%), Positives = 108/108 (100%)
Query: 9 MILQRLFRFSSVIRSAVSVHLRRNIGVTAVAFNKELDPIQKLFVDKIREYKSKRQTSGGP 68
MILQRLFRFSSVIRSAVSVHLRRNIGVTAVAFNKELDPIQKLFVDKIREYKSKRQTSGGP
Sbjct: 1 MILQRLFRFSSVIRSAVSVHLRRNIGVTAVAFNKELDPIQKLFVDKIREYKSKRQTSGGP 60
Query: 69 VDASSEYQQELERELFKLKQMFGNADMNTFPTFKFEDPKFEVIEKPQA 116
VDASSEYQQELERELFKLKQMFGNADMNTFPTFKFEDPKFEVIEKPQA
Sbjct: 61 VDASSEYQQELERELFKLKQMFGNADMNTFPTFKFEDPKFEVIEKPQA 108
>gi|51479137 ATP synthase, H+ transporting, mitochondrial F0
complex, subunit F6 isoform a precursor [Homo sapiens]
Length = 108
Score = 214 bits (544), Expect = 2e-56
Identities = 108/108 (100%), Positives = 108/108 (100%)
Query: 9 MILQRLFRFSSVIRSAVSVHLRRNIGVTAVAFNKELDPIQKLFVDKIREYKSKRQTSGGP 68
MILQRLFRFSSVIRSAVSVHLRRNIGVTAVAFNKELDPIQKLFVDKIREYKSKRQTSGGP
Sbjct: 1 MILQRLFRFSSVIRSAVSVHLRRNIGVTAVAFNKELDPIQKLFVDKIREYKSKRQTSGGP 60
Query: 69 VDASSEYQQELERELFKLKQMFGNADMNTFPTFKFEDPKFEVIEKPQA 116
VDASSEYQQELERELFKLKQMFGNADMNTFPTFKFEDPKFEVIEKPQA
Sbjct: 61 VDASSEYQQELERELFKLKQMFGNADMNTFPTFKFEDPKFEVIEKPQA 108
>gi|18644883 ATP synthase, H+ transporting, mitochondrial F0
complex, subunit F6 isoform a precursor [Homo sapiens]
Length = 108
Score = 214 bits (544), Expect = 2e-56
Identities = 108/108 (100%), Positives = 108/108 (100%)
Query: 9 MILQRLFRFSSVIRSAVSVHLRRNIGVTAVAFNKELDPIQKLFVDKIREYKSKRQTSGGP 68
MILQRLFRFSSVIRSAVSVHLRRNIGVTAVAFNKELDPIQKLFVDKIREYKSKRQTSGGP
Sbjct: 1 MILQRLFRFSSVIRSAVSVHLRRNIGVTAVAFNKELDPIQKLFVDKIREYKSKRQTSGGP 60
Query: 69 VDASSEYQQELERELFKLKQMFGNADMNTFPTFKFEDPKFEVIEKPQA 116
VDASSEYQQELERELFKLKQMFGNADMNTFPTFKFEDPKFEVIEKPQA
Sbjct: 61 VDASSEYQQELERELFKLKQMFGNADMNTFPTFKFEDPKFEVIEKPQA 108
>gi|98986453 myosin, heavy chain 3, skeletal muscle, embryonic [Homo
sapiens]
Length = 1940
Score = 34.7 bits (78), Expect = 0.017
Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 44 LDPIQKLFVDKIREYKSKRQTSGGPVDASSEYQQELERELFKLKQMFGNADMNTFPTFKF 103
LD Q+ F + E+K+K + S ++AS + + L ELFKLK + A ++ T K
Sbjct: 1443 LDKKQRNFDKVLAEWKTKCEESQAELEASLKESRSLSTELFKLKNAYEEA-LDQLETVKR 1501
Query: 104 EDPKFE 109
E+ E
Sbjct: 1502 ENKNLE 1507
>gi|115496169 myosin, heavy chain 7, cardiac muscle, beta [Homo
sapiens]
Length = 1935
Score = 33.1 bits (74), Expect = 0.048
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 44 LDPIQKLFVDKIREYKSKRQTSGGPVDASSEYQQELERELFKLKQMFGNADMNTFPTFKF 103
LD Q+ F + E+K K + S +++S + + L ELFKLK + + TFK
Sbjct: 1442 LDKKQRNFDKILAEWKQKYEESQSELESSQKEARSLSTELFKLKNAY-EESLEHLETFKR 1500
Query: 104 EDPKFE 109
E+ +
Sbjct: 1501 ENKNLQ 1506
>gi|156104908 myosin heavy chain 6 [Homo sapiens]
Length = 1939
Score = 33.1 bits (74), Expect = 0.048
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 44 LDPIQKLFVDKIREYKSKRQTSGGPVDASSEYQQELERELFKLKQMFGNADMNTFPTFKF 103
LD Q+ F + E+K K + S +++S + + L ELFKLK + + TFK
Sbjct: 1444 LDKKQRNFDKILAEWKQKYEESQSELESSQKEARSLSTELFKLKNAY-EESLEHLETFKR 1502
Query: 104 EDPKFE 109
E+ +
Sbjct: 1503 ENKNLQ 1508
>gi|153945790 myosin, heavy chain 8, skeletal muscle, perinatal [Homo
sapiens]
Length = 1937
Score = 31.2 bits (69), Expect = 0.18
Identities = 15/47 (31%), Positives = 27/47 (57%)
Query: 44 LDPIQKLFVDKIREYKSKRQTSGGPVDASSEYQQELERELFKLKQMF 90
LD Q+ F + E+K K + + ++AS + + L ELFK+K ++
Sbjct: 1445 LDKKQRNFDKVLSEWKQKYEETQAELEASQKESRSLSTELFKVKNVY 1491
>gi|115527082 myosin, heavy chain 1, skeletal muscle, adult [Homo
sapiens]
Length = 1939
Score = 30.8 bits (68), Expect = 0.24
Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 44 LDPIQKLFVDKIREYKSKRQTSGGPVDASSEYQQELERELFKLKQMFGNADMNTFPTFKF 103
LD Q+ F + E+K K + + ++AS + + L ELFK+K + ++ T K
Sbjct: 1446 LDKKQRNFDKILAEWKQKCEETHAELEASQKESRSLSTELFKIKNAY-EESLDQLETLKR 1504
Query: 104 EDPKFE 109
E+ +
Sbjct: 1505 ENKNLQ 1510
>gi|45827806 atlastin 3 [Homo sapiens]
Length = 541
Score = 30.8 bits (68), Expect = 0.24
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 61 KRQTSGGPVDASSEYQQELERELFKLKQMF--GNADMNTFPTFK 102
K+ G D S YQQELE E+ +L + F N N F TF+
Sbjct: 399 KKTKKMGGKDFSFRYQQELEEEIKELYENFCKHNGSKNVFSTFR 442
>gi|110611903 myosin, heavy polypeptide 4, skeletal muscle [Homo
sapiens]
Length = 1939
Score = 30.8 bits (68), Expect = 0.24
Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 44 LDPIQKLFVDKIREYKSKRQTSGGPVDASSEYQQELERELFKLKQMFGNADMNTFPTFKF 103
LD Q+ F + E+K K + + ++AS + + L ELFK+K + ++ T K
Sbjct: 1446 LDKKQRNFDKVLAEWKQKYEETQAELEASQKESRSLSTELFKVKNAY-EESLDHLETLKR 1504
Query: 104 EDPKFE 109
E+ +
Sbjct: 1505 ENKNLQ 1510
>gi|41349495 DNA primase polypeptide 2 [Homo sapiens]
Length = 509
Score = 30.0 bits (66), Expect = 0.41
Identities = 16/47 (34%), Positives = 24/47 (51%)
Query: 41 NKELDPIQKLFVDKIREYKSKRQTSGGPVDASSEYQQELERELFKLK 87
N L + L +D+++ KS V + +YQ +LE EL KLK
Sbjct: 36 NISLIEFENLAIDRVKLLKSVENLGVSYVKGTEQYQSKLESELRKLK 82
>gi|153791586 myosin, heavy chain 2, skeletal muscle, adult [Homo
sapiens]
Length = 1941
Score = 29.6 bits (65), Expect = 0.54
Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 44 LDPIQKLFVDKIREYKSKRQTSGGPVDASSEYQQELERELFKLKQMFGNADMNTFPTFKF 103
LD Q+ F + E+K K + + ++AS + + L ELFK+K + ++ T K
Sbjct: 1448 LDKKQRNFDKILAEWKQKCEETHAELEASQKEARSLGTELFKIKNAY-EESLDQLETLKR 1506
Query: 104 EDPKFE 109
E+ +
Sbjct: 1507 ENKNLQ 1512
>gi|153792663 myosin, heavy chain 2, skeletal muscle, adult [Homo
sapiens]
Length = 1941
Score = 29.6 bits (65), Expect = 0.54
Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 44 LDPIQKLFVDKIREYKSKRQTSGGPVDASSEYQQELERELFKLKQMFGNADMNTFPTFKF 103
LD Q+ F + E+K K + + ++AS + + L ELFK+K + ++ T K
Sbjct: 1448 LDKKQRNFDKILAEWKQKCEETHAELEASQKEARSLGTELFKIKNAY-EESLDQLETLKR 1506
Query: 104 EDPKFE 109
E+ +
Sbjct: 1507 ENKNLQ 1512
>gi|5453780 nuclear transcription factor Y, beta [Homo sapiens]
Length = 207
Score = 29.3 bits (64), Expect = 0.70
Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 35 VTAVAFNKELDPIQKLFVDKIREYKSKRQTSGGPVDASSEYQQELERELF 84
++ + F+ ++P+ KL++ K RE + GG V A+ +EL E F
Sbjct: 122 MSTLGFDSYVEPL-KLYLQKFREAMKGEKGIGGAVTATDGLSEELTEEAF 170
>gi|110624781 myosin, heavy polypeptide 13, skeletal muscle [Homo
sapiens]
Length = 1938
Score = 28.9 bits (63), Expect = 0.91
Identities = 14/47 (29%), Positives = 25/47 (53%)
Query: 44 LDPIQKLFVDKIREYKSKRQTSGGPVDASSEYQQELERELFKLKQMF 90
LD Q+ F + E+K K S ++A+ + + L ELFK++ +
Sbjct: 1446 LDKKQRNFDKVLAEWKQKLDESQAELEAAQKESRSLSTELFKMRNAY 1492
>gi|47157325 protein kinase C, delta [Homo sapiens]
Length = 676
Score = 27.7 bits (60), Expect = 2.0
Identities = 26/105 (24%), Positives = 45/105 (42%), Gaps = 16/105 (15%)
Query: 10 ILQRLFRFSSVIRSAVSVHLR-----RNIGVTAVAFNKELDPIQKLFVDKIREYKSKRQT 64
IL++LF R V+ +++ + I T + + L+P + V R+Y + Q
Sbjct: 578 ILEKLFEREPTKRLGVTGNIKIHPFFKTINWTLLE-KRRLEPPFRPKVKSPRDYSNFDQ- 635
Query: 65 SGGPVDASSEYQQELERELFKLKQMFGNADMNTFPTFKFEDPKFE 109
E+ E R + K + + D + F F F +PKFE
Sbjct: 636 ---------EFLNEKARLSYSDKNLIDSMDQSAFAGFSFVNPKFE 671
>gi|31377782 protein kinase C, delta [Homo sapiens]
Length = 676
Score = 27.7 bits (60), Expect = 2.0
Identities = 26/105 (24%), Positives = 45/105 (42%), Gaps = 16/105 (15%)
Query: 10 ILQRLFRFSSVIRSAVSVHLR-----RNIGVTAVAFNKELDPIQKLFVDKIREYKSKRQT 64
IL++LF R V+ +++ + I T + + L+P + V R+Y + Q
Sbjct: 578 ILEKLFEREPTKRLGVTGNIKIHPFFKTINWTLLE-KRRLEPPFRPKVKSPRDYSNFDQ- 635
Query: 65 SGGPVDASSEYQQELERELFKLKQMFGNADMNTFPTFKFEDPKFE 109
E+ E R + K + + D + F F F +PKFE
Sbjct: 636 ---------EFLNEKARLSYSDKNLIDSMDQSAFAGFSFVNPKFE 671
>gi|26638659 mitochondrial ribosomal protein L40 [Homo sapiens]
Length = 206
Score = 27.7 bits (60), Expect = 2.0
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 47 IQKLFVDKIREYKSKRQTSGGPVDASSEYQQELERELFKLKQMFGNADMNTFPTFKFEDP 106
++K + K +E K +R T ++A E +EL+ E KL D N FP F+ E P
Sbjct: 118 LKKWSLYKQQERKMERDTIRAMLEAQQEALEELQLESPKLHAEAIKRDPNLFP-FEKEGP 176
Query: 107 KF 108
+
Sbjct: 177 HY 178
>gi|150010558 myosin, heavy polypeptide 15 [Homo sapiens]
Length = 1946
Score = 27.3 bits (59), Expect = 2.7
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 55 IREYKSKRQTSGGPVDASSEYQQELERELFKLKQMF 90
+ ++K K + S +DAS + Q L EL KLK +
Sbjct: 1465 LADWKQKHEESQALLDASQKEVQALSTELLKLKNTY 1500
>gi|21071077 dishevelled-associated activator of morphogenesis 1
[Homo sapiens]
Length = 1078
Score = 26.9 bits (58), Expect = 3.5
Identities = 18/75 (24%), Positives = 36/75 (48%)
Query: 15 FRFSSVIRSAVSVHLRRNIGVTAVAFNKELDPIQKLFVDKIREYKSKRQTSGGPVDASSE 74
F +V+R V+ + + A KE + +Q+ K RE +K Q + ++
Sbjct: 430 FNIKNVVRMLVNENEVKQWKEQAEKMRKEHNELQQKLEKKERECDAKTQEKEEMMQTLNK 489
Query: 75 YQQELERELFKLKQM 89
+++LE+E + KQ+
Sbjct: 490 MKEKLEKETTEHKQV 504
>gi|68163411 activated leukocyte cell adhesion molecule [Homo
sapiens]
Length = 583
Score = 26.6 bits (57), Expect = 4.5
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 34 GVTAVAFNKELDPIQKLF-VDKIREYKSKRQTSGGPVDASSEY 75
G + F KE+DP+ +L+ + EYK+ + P S Y
Sbjct: 182 GAVVIIFKKEMDPVTQLYTMTSTLEYKTTKADIQMPFTCSVTY 224
>gi|190343023 ATP-binding cassette, sub-family C, member 6 isoform 1
[Homo sapiens]
Length = 1503
Score = 26.2 bits (56), Expect = 5.9
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 9 MILQRLFRFSSVIRSAVSVHLRRNIGVTAVAFNKELDPIQKLFVDKIR 56
++ QRL V+RS +S R IG F+KE D + DK+R
Sbjct: 1019 LLFQRLLW--DVVRSPISFFERTPIGHLLNRFSKETDTVDVDIPDKLR 1064
>gi|239756495 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1312
Score = 26.2 bits (56), Expect = 5.9
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 9 MILQRLFRFSSVIRSAVSVHLRRNIGVTAVAFNKELDPIQKLFVDKIR 56
++ QRL V+RS +S R IG F+KE D + DK+R
Sbjct: 828 LLFQRLLW--DVVRSPISFFERTPIGHLLNRFSKETDTVDVDIPDKLR 873
>gi|50845418 WNK lysine deficient protein kinase 3 isoform 1 [Homo
sapiens]
Length = 1800
Score = 25.8 bits (55), Expect = 7.7
Identities = 13/45 (28%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 19 SVIRSAVSVHLRRNIGVTAVAFNKELDP-IQKLFVDKIREYKSKR 62
S ++A ++ + G+ +FNK DP ++++ IR+ KS+R
Sbjct: 349 SECQNAAQIYRKVTSGIKPASFNKVTDPEVKEIIEGCIRQNKSER 393
>gi|50845416 WNK lysine deficient protein kinase 3 isoform 2 [Homo
sapiens]
Length = 1743
Score = 25.8 bits (55), Expect = 7.7
Identities = 13/45 (28%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 19 SVIRSAVSVHLRRNIGVTAVAFNKELDP-IQKLFVDKIREYKSKR 62
S ++A ++ + G+ +FNK DP ++++ IR+ KS+R
Sbjct: 349 SECQNAAQIYRKVTSGIKPASFNKVTDPEVKEIIEGCIRQNKSER 393
>gi|4507171 secreted protein, acidic, cysteine-rich [Homo sapiens]
Length = 303
Score = 25.8 bits (55), Expect = 7.7
Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 41 NKELDPIQKLFVDKIREYKSKRQTSGGPVD-ASSEYQQELERELFKLKQMFGNADMN 96
N L QKL V KI E + + + PV+ + ++++ +F + FG D +
Sbjct: 185 NNLLTEKQKLRVKKIHENEKRLEAGDHPVELLARDFEKNYNMYIFPVHWQFGQLDQH 241
>gi|225579127 Sin3A-associated protein, 130kDa isoform a [Homo
sapiens]
Length = 1083
Score = 25.8 bits (55), Expect = 7.7
Identities = 17/51 (33%), Positives = 23/51 (45%)
Query: 29 LRRNIGVTAVAFNKELDPIQKLFVDKIREYKSKRQTSGGPVDASSEYQQEL 79
LR+ +A K L P Q V R S R TSG P A ++ + E+
Sbjct: 671 LRKKPATDGMAVRKTLIPPQPPDVASPRVESSMRSTSGSPRPAGAKPKSEI 721
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.136 0.385
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,918,629
Number of Sequences: 37866
Number of extensions: 138915
Number of successful extensions: 495
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 470
Number of HSP's gapped (non-prelim): 32
length of query: 116
length of database: 18,247,518
effective HSP length: 86
effective length of query: 30
effective length of database: 14,991,042
effective search space: 449731260
effective search space used: 449731260
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.