Search of human proteins with 50845407

Search of human proteins with 50845407

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|50845407 chromosome 22 open reading frame 13 [Homo sapiens]
         (240 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|50845407 chromosome 22 open reading frame 13 [Homo sapiens]        509   e-145
gi|115583683 hypothetical protein LOC253714 [Homo sapiens]             32   0.64 
gi|30348954 mindbomb homolog 1 [Homo sapiens]                          28   5.4  
gi|197304715 vav 2 guanine nucleotide exchange factor isoform 1 ...    28   5.4  
gi|40549448 vav 2 guanine nucleotide exchange factor isoform 2 [...    28   5.4  
gi|27501446 density-regulated protein [Homo sapiens]                   28   5.4  
gi|126091070 sperm associated antigen 11B isoform E precursor [H...    28   7.1  
gi|126131097 sperm associated antigen 11B isoform D preproprotei...    28   7.1  

>gi|50845407 chromosome 22 open reading frame 13 [Homo sapiens]
          Length = 240

 Score =  509 bits (1311), Expect = e-145
 Identities = 240/240 (100%), Positives = 240/240 (100%)

Query: 1   MRTEAEAAGPPLEPGDFVQLPVPVIQQLYHWDCGLACSRMVLRYLGQLDDSEFERALQKL 60
           MRTEAEAAGPPLEPGDFVQLPVPVIQQLYHWDCGLACSRMVLRYLGQLDDSEFERALQKL
Sbjct: 1   MRTEAEAAGPPLEPGDFVQLPVPVIQQLYHWDCGLACSRMVLRYLGQLDDSEFERALQKL 60

Query: 61  QLTRSIWTIDLAYLMHHFGVRHRFCTQTLGVDKGYKNQSFYRKHFDTEETRVNQLFAQAK 120
           QLTRSIWTIDLAYLMHHFGVRHRFCTQTLGVDKGYKNQSFYRKHFDTEETRVNQLFAQAK
Sbjct: 61  QLTRSIWTIDLAYLMHHFGVRHRFCTQTLGVDKGYKNQSFYRKHFDTEETRVNQLFAQAK 120

Query: 121 ACKVLVEKCTVSVKDIQAHLAQGHVAIVLVNSGVLHCDLCSSPVKYCCFTPSGHHCFCRT 180
           ACKVLVEKCTVSVKDIQAHLAQGHVAIVLVNSGVLHCDLCSSPVKYCCFTPSGHHCFCRT
Sbjct: 121 ACKVLVEKCTVSVKDIQAHLAQGHVAIVLVNSGVLHCDLCSSPVKYCCFTPSGHHCFCRT 180

Query: 181 PDYQGHFIVLRGYNRATGCIFYNNPAYADPGMCSTSISNFEEARTSYGTDEDILFVYLDS 240
           PDYQGHFIVLRGYNRATGCIFYNNPAYADPGMCSTSISNFEEARTSYGTDEDILFVYLDS
Sbjct: 181 PDYQGHFIVLRGYNRATGCIFYNNPAYADPGMCSTSISNFEEARTSYGTDEDILFVYLDS 240


>gi|115583683 hypothetical protein LOC253714 [Homo sapiens]
          Length = 1243

 Score = 31.6 bits (70), Expect = 0.64
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)

Query: 10  PPLEPGDFVQLPVPVIQQLYHWDCGLACSRMVLRYLGQL 48
           P   P DF   PV  I QL+ WD  + C ++V RYL  +
Sbjct: 754 PSTAPSDFQPQPVISIIQLFGWD-DIICPQVVARYLSHV 791


>gi|30348954 mindbomb homolog 1 [Homo sapiens]
          Length = 1006

 Score = 28.5 bits (62), Expect = 5.4
 Identities = 15/62 (24%), Positives = 23/62 (37%), Gaps = 12/62 (19%)

Query: 117 AQAKACKVLVEKCTVSVKDIQAHLAQGHVAIVLVNSGVLHCDLCSSPVKYCCFTPSGHHC 176
           A    C   V+KC +  + +Q+             + +  C +CS       F P GH C
Sbjct: 838 ATCSLCSPRVKKCLICKEQVQSR------------TKIEECVVCSDKKAAVLFQPCGHMC 885

Query: 177 FC 178
            C
Sbjct: 886 AC 887


>gi|197304715 vav 2 guanine nucleotide exchange factor isoform 1
           [Homo sapiens]
          Length = 878

 Score = 28.5 bits (62), Expect = 5.4
 Identities = 12/35 (34%), Positives = 20/35 (57%)

Query: 101 YRKHFDTEETRVNQLFAQAKACKVLVEKCTVSVKD 135
           Y  H +  +  +NQL A  +  +  VE+CT+ V+D
Sbjct: 286 YCSHMEHAQNTLNQLLASREDFRQKVEECTLKVQD 320


>gi|40549448 vav 2 guanine nucleotide exchange factor isoform 2
           [Homo sapiens]
          Length = 839

 Score = 28.5 bits (62), Expect = 5.4
 Identities = 12/35 (34%), Positives = 20/35 (57%)

Query: 101 YRKHFDTEETRVNQLFAQAKACKVLVEKCTVSVKD 135
           Y  H +  +  +NQL A  +  +  VE+CT+ V+D
Sbjct: 281 YCSHMEHAQNTLNQLLASREDFRQKVEECTLKVQD 315


>gi|27501446 density-regulated protein [Homo sapiens]
          Length = 198

 Score = 28.5 bits (62), Expect = 5.4
 Identities = 10/23 (43%), Positives = 14/23 (60%)

Query: 154 VLHCDLCSSPVKYCCFTPSGHHC 176
           VL+C +CS P +YC + P    C
Sbjct: 31  VLYCGVCSLPTEYCEYMPDVAKC 53


>gi|126091070 sperm associated antigen 11B isoform E precursor [Homo
           sapiens]
          Length = 80

 Score = 28.1 bits (61), Expect = 7.1
 Identities = 11/36 (30%), Positives = 18/36 (50%)

Query: 133 VKDIQAHLAQGHVAIVLVNSGVLHCDLCSSPVKYCC 168
           +++   H+ QG   +   +SG    D+CS P   CC
Sbjct: 25  IRNTICHMQQGICRLFFCHSGEKKRDICSDPWNRCC 60


>gi|126131097 sperm associated antigen 11B isoform D preproprotein
           [Homo sapiens]
          Length = 133

 Score = 28.1 bits (61), Expect = 7.1
 Identities = 11/36 (30%), Positives = 18/36 (50%)

Query: 133 VKDIQAHLAQGHVAIVLVNSGVLHCDLCSSPVKYCC 168
           +++   H+ QG   +   +SG    D+CS P   CC
Sbjct: 78  IRNTICHMQQGICRLFFCHSGEKKRDICSDPWNRCC 113


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.325    0.139    0.449 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,821,894
Number of Sequences: 37866
Number of extensions: 425226
Number of successful extensions: 1168
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1161
Number of HSP's gapped (non-prelim): 9
length of query: 240
length of database: 18,247,518
effective HSP length: 99
effective length of query: 141
effective length of database: 14,498,784
effective search space: 2044328544
effective search space used: 2044328544
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.