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Search of human proteins with 50726989
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|50726989 stromal antigen 3-like 1 isoform 2 [Homo sapiens]
(151 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|50726989 stromal antigen 3-like 1 isoform 2 [Homo sapiens] 311 1e-85
gi|50726994 stromal antigen 3-like 1 isoform 1 [Homo sapiens] 308 1e-84
gi|57863310 stromal antigen 3 [Homo sapiens] 231 2e-61
gi|31563531 stromal antigen 2 isoform b [Homo sapiens] 123 7e-29
gi|112789530 stromal antigen 2 isoform b [Homo sapiens] 123 7e-29
gi|112789528 stromal antigen 2 isoform a [Homo sapiens] 123 7e-29
gi|112789526 stromal antigen 2 isoform a [Homo sapiens] 123 7e-29
gi|148226757 STAG3-like [Homo sapiens] 120 4e-28
gi|62243696 stromal antigen 1 [Homo sapiens] 119 1e-27
gi|148236295 stromal antigen 3-like 3 [Homo sapiens] 116 8e-27
gi|117553586 dedicator of cytokinesis 5 [Homo sapiens] 27 8.6
>gi|50726989 stromal antigen 3-like 1 isoform 2 [Homo sapiens]
Length = 151
Score = 311 bits (797), Expect = 1e-85
Identities = 151/151 (100%), Positives = 151/151 (100%)
Query: 1 MQHREVRVKCVKALKGLYGNRDLTARLELFTGRFKDWMVSMIVDREYSVAVEAVRLLILI 60
MQHREVRVKCVKALKGLYGNRDLTARLELFTGRFKDWMVSMIVDREYSVAVEAVRLLILI
Sbjct: 1 MQHREVRVKCVKALKGLYGNRDLTARLELFTGRFKDWMVSMIVDREYSVAVEAVRLLILI 60
Query: 61 LKLFYPECEIRTMGGREQRQSPGAQRTFFQLLLSFFVESKLHDHAAYLVDNLWDCAGTQL 120
LKLFYPECEIRTMGGREQRQSPGAQRTFFQLLLSFFVESKLHDHAAYLVDNLWDCAGTQL
Sbjct: 61 LKLFYPECEIRTMGGREQRQSPGAQRTFFQLLLSFFVESKLHDHAAYLVDNLWDCAGTQL 120
Query: 121 KDWEGLTSLLLEKDQSTCHMEPGPGTFHLLG 151
KDWEGLTSLLLEKDQSTCHMEPGPGTFHLLG
Sbjct: 121 KDWEGLTSLLLEKDQSTCHMEPGPGTFHLLG 151
>gi|50726994 stromal antigen 3-like 1 isoform 1 [Homo sapiens]
Length = 205
Score = 308 bits (788), Expect = 1e-84
Identities = 149/150 (99%), Positives = 150/150 (100%)
Query: 2 QHREVRVKCVKALKGLYGNRDLTARLELFTGRFKDWMVSMIVDREYSVAVEAVRLLILIL 61
+HREVRVKCVKALKGLYGNRDLTARLELFTGRFKDWMVSMIVDREYSVAVEAVRLLILIL
Sbjct: 56 KHREVRVKCVKALKGLYGNRDLTARLELFTGRFKDWMVSMIVDREYSVAVEAVRLLILIL 115
Query: 62 KLFYPECEIRTMGGREQRQSPGAQRTFFQLLLSFFVESKLHDHAAYLVDNLWDCAGTQLK 121
KLFYPECEIRTMGGREQRQSPGAQRTFFQLLLSFFVESKLHDHAAYLVDNLWDCAGTQLK
Sbjct: 116 KLFYPECEIRTMGGREQRQSPGAQRTFFQLLLSFFVESKLHDHAAYLVDNLWDCAGTQLK 175
Query: 122 DWEGLTSLLLEKDQSTCHMEPGPGTFHLLG 151
DWEGLTSLLLEKDQSTCHMEPGPGTFHLLG
Sbjct: 176 DWEGLTSLLLEKDQSTCHMEPGPGTFHLLG 205
>gi|57863310 stromal antigen 3 [Homo sapiens]
Length = 1225
Score = 231 bits (588), Expect = 2e-61
Identities = 121/171 (70%), Positives = 129/171 (75%), Gaps = 36/171 (21%)
Query: 2 QHREVRVKCVKALKGLYGNRDLTARLELFTGRFKDWMVSMIVDREYSVAVEAVRLLILIL 61
+HREVR+KCVKALKGLYGNRDLT RLELFT RFKD MVSM++DREY VAVEAVRLLILIL
Sbjct: 355 KHREVRLKCVKALKGLYGNRDLTTRLELFTSRFKDRMVSMVMDREYDVAVEAVRLLILIL 414
Query: 62 K------------------------------------LFYPECEIRTMGGREQRQSPGAQ 85
K LFYPECEIR MGGREQRQSPGAQ
Sbjct: 415 KNMEGVLTDADCESVYPVVYASHRGLASAAGEFLYWKLFYPECEIRMMGGREQRQSPGAQ 474
Query: 86 RTFFQLLLSFFVESKLHDHAAYLVDNLWDCAGTQLKDWEGLTSLLLEKDQS 136
RTFFQLLLSFFVES+LHDHAAYLVD+LWDCAG +LKDWEGLTSLLLEKDQ+
Sbjct: 475 RTFFQLLLSFFVESELHDHAAYLVDSLWDCAGARLKDWEGLTSLLLEKDQN 525
>gi|31563531 stromal antigen 2 isoform b [Homo sapiens]
Length = 1231
Score = 123 bits (308), Expect = 7e-29
Identities = 73/169 (43%), Positives = 99/169 (58%), Gaps = 39/169 (23%)
Query: 5 EVRVKCVKALKGLYGNRDLTARLELFTGRFKDWMVSMIVDREYSVAVEAVRLLILILK-- 62
EVR+KC+ AL+GLY N++L ++LELFT RFKD +VSM +D+EY VAV+A++LL L+L+
Sbjct: 342 EVRLKCLTALQGLYYNKELNSKLELFTSRFKDRIVSMTLDKEYDVAVQAIKLLTLVLQSS 401
Query: 63 ---LFYPECE------------IRTMGG--------------------REQRQSPGAQRT 87
L +CE + G R RQ P A
Sbjct: 402 EEVLTAEDCENVYHLVYSAHRPVAVAAGEFLYKKLFSRRDPEEDGMMKRRGRQGPNA--N 459
Query: 88 FFQLLLSFFVESKLHDHAAYLVDNLWDCAGTQLKDWEGLTSLLLEKDQS 136
+ L+ FF+ES+LH+HAAYLVD++WDCA LKDWE + SLLLE+ S
Sbjct: 460 LVKTLVFFFLESELHEHAAYLVDSMWDCATELLKDWECMNSLLLEEPLS 508
>gi|112789530 stromal antigen 2 isoform b [Homo sapiens]
Length = 1231
Score = 123 bits (308), Expect = 7e-29
Identities = 73/169 (43%), Positives = 99/169 (58%), Gaps = 39/169 (23%)
Query: 5 EVRVKCVKALKGLYGNRDLTARLELFTGRFKDWMVSMIVDREYSVAVEAVRLLILILK-- 62
EVR+KC+ AL+GLY N++L ++LELFT RFKD +VSM +D+EY VAV+A++LL L+L+
Sbjct: 342 EVRLKCLTALQGLYYNKELNSKLELFTSRFKDRIVSMTLDKEYDVAVQAIKLLTLVLQSS 401
Query: 63 ---LFYPECE------------IRTMGG--------------------REQRQSPGAQRT 87
L +CE + G R RQ P A
Sbjct: 402 EEVLTAEDCENVYHLVYSAHRPVAVAAGEFLYKKLFSRRDPEEDGMMKRRGRQGPNA--N 459
Query: 88 FFQLLLSFFVESKLHDHAAYLVDNLWDCAGTQLKDWEGLTSLLLEKDQS 136
+ L+ FF+ES+LH+HAAYLVD++WDCA LKDWE + SLLLE+ S
Sbjct: 460 LVKTLVFFFLESELHEHAAYLVDSMWDCATELLKDWECMNSLLLEEPLS 508
>gi|112789528 stromal antigen 2 isoform a [Homo sapiens]
Length = 1268
Score = 123 bits (308), Expect = 7e-29
Identities = 73/169 (43%), Positives = 99/169 (58%), Gaps = 39/169 (23%)
Query: 5 EVRVKCVKALKGLYGNRDLTARLELFTGRFKDWMVSMIVDREYSVAVEAVRLLILILK-- 62
EVR+KC+ AL+GLY N++L ++LELFT RFKD +VSM +D+EY VAV+A++LL L+L+
Sbjct: 342 EVRLKCLTALQGLYYNKELNSKLELFTSRFKDRIVSMTLDKEYDVAVQAIKLLTLVLQSS 401
Query: 63 ---LFYPECE------------IRTMGG--------------------REQRQSPGAQRT 87
L +CE + G R RQ P A
Sbjct: 402 EEVLTAEDCENVYHLVYSAHRPVAVAAGEFLYKKLFSRRDPEEDGMMKRRGRQGPNA--N 459
Query: 88 FFQLLLSFFVESKLHDHAAYLVDNLWDCAGTQLKDWEGLTSLLLEKDQS 136
+ L+ FF+ES+LH+HAAYLVD++WDCA LKDWE + SLLLE+ S
Sbjct: 460 LVKTLVFFFLESELHEHAAYLVDSMWDCATELLKDWECMNSLLLEEPLS 508
>gi|112789526 stromal antigen 2 isoform a [Homo sapiens]
Length = 1268
Score = 123 bits (308), Expect = 7e-29
Identities = 73/169 (43%), Positives = 99/169 (58%), Gaps = 39/169 (23%)
Query: 5 EVRVKCVKALKGLYGNRDLTARLELFTGRFKDWMVSMIVDREYSVAVEAVRLLILILK-- 62
EVR+KC+ AL+GLY N++L ++LELFT RFKD +VSM +D+EY VAV+A++LL L+L+
Sbjct: 342 EVRLKCLTALQGLYYNKELNSKLELFTSRFKDRIVSMTLDKEYDVAVQAIKLLTLVLQSS 401
Query: 63 ---LFYPECE------------IRTMGG--------------------REQRQSPGAQRT 87
L +CE + G R RQ P A
Sbjct: 402 EEVLTAEDCENVYHLVYSAHRPVAVAAGEFLYKKLFSRRDPEEDGMMKRRGRQGPNA--N 459
Query: 88 FFQLLLSFFVESKLHDHAAYLVDNLWDCAGTQLKDWEGLTSLLLEKDQS 136
+ L+ FF+ES+LH+HAAYLVD++WDCA LKDWE + SLLLE+ S
Sbjct: 460 LVKTLVFFFLESELHEHAAYLVDSMWDCATELLKDWECMNSLLLEEPLS 508
>gi|148226757 STAG3-like [Homo sapiens]
Length = 134
Score = 120 bits (301), Expect = 4e-28
Identities = 60/61 (98%), Positives = 61/61 (100%)
Query: 2 QHREVRVKCVKALKGLYGNRDLTARLELFTGRFKDWMVSMIVDREYSVAVEAVRLLILIL 61
+HREVRVKCVKALKGLYGNRDLTARLELFTGRFKDWMVSMIVDREYSVAVEAVRLLILIL
Sbjct: 56 KHREVRVKCVKALKGLYGNRDLTARLELFTGRFKDWMVSMIVDREYSVAVEAVRLLILIL 115
Query: 62 K 62
K
Sbjct: 116 K 116
>gi|62243696 stromal antigen 1 [Homo sapiens]
Length = 1258
Score = 119 bits (297), Expect = 1e-27
Identities = 73/168 (43%), Positives = 96/168 (57%), Gaps = 42/168 (25%)
Query: 5 EVRVKCVKALKGLYGNRDLTARLELFTGRFKDWMVSMIVDREYSVAVEAVRLLILIL--- 61
EVR+KC+KAL+ LY NR+L +LELFT RFKD +VSM +D+EY VAVEA+RL+ LIL
Sbjct: 345 EVRLKCLKALQSLYTNRELFPKLELFTNRFKDRIVSMTLDKEYDVAVEAIRLVTLILHGS 404
Query: 62 ---------------------------------KLFY---PECEIRTMGGREQRQSPGAQ 85
KLF P+ E + R R SP
Sbjct: 405 EEALSNEDCENVYHLVYSAHRPVAVAAGEFLHKKLFSRHDPQAE-EALAKRRGRNSPNG- 462
Query: 86 RTFFQLLLSFFVESKLHDHAAYLVDNLWDCAGTQLKDWEGLTSLLLEK 133
++L+ FF+ES+LH+HAAYLVD+LW+ + LKDWE +T LLLE+
Sbjct: 463 -NLIRMLVLFFLESELHEHAAYLVDSLWESSQELLKDWECMTELLLEE 509
>gi|148236295 stromal antigen 3-like 3 [Homo sapiens]
Length = 134
Score = 116 bits (290), Expect = 8e-27
Identities = 58/61 (95%), Positives = 60/61 (98%)
Query: 2 QHREVRVKCVKALKGLYGNRDLTARLELFTGRFKDWMVSMIVDREYSVAVEAVRLLILIL 61
+HREVRVKCVKALKGLYGNRDLTARLELFTG FKDWMVSMI+DREYSVAVEAVRLLILIL
Sbjct: 56 KHREVRVKCVKALKGLYGNRDLTARLELFTGCFKDWMVSMIMDREYSVAVEAVRLLILIL 115
Query: 62 K 62
K
Sbjct: 116 K 116
>gi|117553586 dedicator of cytokinesis 5 [Homo sapiens]
Length = 1870
Score = 26.6 bits (57), Expect = 8.6
Identities = 13/45 (28%), Positives = 28/45 (62%)
Query: 89 FQLLLSFFVESKLHDHAAYLVDNLWDCAGTQLKDWEGLTSLLLEK 133
+Q ++S+F + K+ + A L L + +++ D+EGL +LL ++
Sbjct: 1301 YQEIISYFDKGKMWEKAIKLSKELAETYESKVFDYEGLGNLLKKR 1345
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.325 0.140 0.435
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,833,731
Number of Sequences: 37866
Number of extensions: 206504
Number of successful extensions: 538
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 521
Number of HSP's gapped (non-prelim): 17
length of query: 151
length of database: 18,247,518
effective HSP length: 93
effective length of query: 58
effective length of database: 14,725,980
effective search space: 854106840
effective search space used: 854106840
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.