Search of human proteins with 5031597

Search of human proteins with 5031597

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|5031597 actin related protein 2/3 complex subunit 3 [Homo
sapiens]
         (178 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|5031597 actin related protein 2/3 complex subunit 3 [Homo sap...   371   e-103
gi|14790152 tumor necrosis factor ligand superfamily, member 11 ...    30   1.4  
gi|4507595 tumor necrosis factor ligand superfamily, member 11 i...    30   1.4  
gi|117414154 sodium channel associated protein 2 isoform b [Homo...    29   1.9  
gi|117414162 sodium channel associated protein 2 isoform a [Homo...    29   1.9  
gi|12025678 actinin, alpha 4 [Homo sapiens]                            28   4.1  
gi|226493203 coiled-coil domain containing 76 [Homo sapiens]           28   5.4  
gi|194097352 actinin, alpha 1 isoform c [Homo sapiens]                 28   5.4  
gi|194097350 actinin, alpha 1 isoform a [Homo sapiens]                 28   5.4  
gi|4501891 actinin, alpha 1 isoform b [Homo sapiens]                   28   5.4  
gi|45433552 G protein-coupled receptor 133 [Homo sapiens]              27   9.2  

>gi|5031597 actin related protein 2/3 complex subunit 3 [Homo
           sapiens]
          Length = 178

 Score =  371 bits (952), Expect = e-103
 Identities = 178/178 (100%), Positives = 178/178 (100%)

Query: 1   MPAYHSSLMDPDTKLIGNMALLPIRSQFKGPAPRETKDTDIVDEAIYYFKANVFFKNYEI 60
           MPAYHSSLMDPDTKLIGNMALLPIRSQFKGPAPRETKDTDIVDEAIYYFKANVFFKNYEI
Sbjct: 1   MPAYHSSLMDPDTKLIGNMALLPIRSQFKGPAPRETKDTDIVDEAIYYFKANVFFKNYEI 60

Query: 61  KNEADRTLIYITLYISECLKKLQKCNSKSQGEKEMYTLGITNFPIPGEPGFPLNAIYAKP 120
           KNEADRTLIYITLYISECLKKLQKCNSKSQGEKEMYTLGITNFPIPGEPGFPLNAIYAKP
Sbjct: 61  KNEADRTLIYITLYISECLKKLQKCNSKSQGEKEMYTLGITNFPIPGEPGFPLNAIYAKP 120

Query: 121 ANKQEDEVMRAYLQQLRQETGLRLCEKVFDPQNDKPSKWWTCFVKRQFMNKSLSGPGQ 178
           ANKQEDEVMRAYLQQLRQETGLRLCEKVFDPQNDKPSKWWTCFVKRQFMNKSLSGPGQ
Sbjct: 121 ANKQEDEVMRAYLQQLRQETGLRLCEKVFDPQNDKPSKWWTCFVKRQFMNKSLSGPGQ 178


>gi|14790152 tumor necrosis factor ligand superfamily, member 11
           isoform 2 [Homo sapiens]
          Length = 244

 Score = 29.6 bits (65), Expect = 1.4
 Identities = 12/60 (20%), Positives = 29/60 (48%)

Query: 44  EAIYYFKANVFFKNYEIKNEADRTLIYITLYISECLKKLQKCNSKSQGEKEMYTLGITNF 103
           +  YY  AN+ F+++E   +     + + +Y+++   K+   ++  +G    Y  G + F
Sbjct: 138 DGFYYLYANICFRHHETSGDLATEYLQLMVYVTKTSIKIPSSHTLMKGGSTKYWSGNSEF 197


>gi|4507595 tumor necrosis factor ligand superfamily, member 11
           isoform 1 [Homo sapiens]
          Length = 317

 Score = 29.6 bits (65), Expect = 1.4
 Identities = 12/60 (20%), Positives = 29/60 (48%)

Query: 44  EAIYYFKANVFFKNYEIKNEADRTLIYITLYISECLKKLQKCNSKSQGEKEMYTLGITNF 103
           +  YY  AN+ F+++E   +     + + +Y+++   K+   ++  +G    Y  G + F
Sbjct: 211 DGFYYLYANICFRHHETSGDLATEYLQLMVYVTKTSIKIPSSHTLMKGGSTKYWSGNSEF 270


>gi|117414154 sodium channel associated protein 2 isoform b [Homo
           sapiens]
          Length = 939

 Score = 29.3 bits (64), Expect = 1.9
 Identities = 29/111 (26%), Positives = 45/111 (40%), Gaps = 4/111 (3%)

Query: 33  PRETKDTDIVDEAIYYFKANVFFK-NYEIKNEADRTLIYITLYISECLKKLQKCNSKSQG 91
           PR  +DTDI  E+ Y  +     K     K   D   I    + ++       CN K + 
Sbjct: 230 PRPKRDTDITSESDYGNRKECNRKVPRRSKIPYDAKTIQTIKHHNKNYNSFVSCNRKMKP 289

Query: 92  E--KEMY-TLGITNFPIPGEPGFPLNAIYAKPANKQEDEVMRAYLQQLRQE 139
              KE+Y +  + N P+  E   P   I     +  ED   ++ ++QL QE
Sbjct: 290 PYLKELYVSSSLANCPMLQESEKPKTEIIKVDQSHSEDNTYQSLVEQLDQE 340


>gi|117414162 sodium channel associated protein 2 isoform a [Homo
           sapiens]
          Length = 1032

 Score = 29.3 bits (64), Expect = 1.9
 Identities = 29/111 (26%), Positives = 45/111 (40%), Gaps = 4/111 (3%)

Query: 33  PRETKDTDIVDEAIYYFKANVFFK-NYEIKNEADRTLIYITLYISECLKKLQKCNSKSQG 91
           PR  +DTDI  E+ Y  +     K     K   D   I    + ++       CN K + 
Sbjct: 323 PRPKRDTDITSESDYGNRKECNRKVPRRSKIPYDAKTIQTIKHHNKNYNSFVSCNRKMKP 382

Query: 92  E--KEMY-TLGITNFPIPGEPGFPLNAIYAKPANKQEDEVMRAYLQQLRQE 139
              KE+Y +  + N P+  E   P   I     +  ED   ++ ++QL QE
Sbjct: 383 PYLKELYVSSSLANCPMLQESEKPKTEIIKVDQSHSEDNTYQSLVEQLDQE 433


>gi|12025678 actinin, alpha 4 [Homo sapiens]
          Length = 911

 Score = 28.1 bits (61), Expect = 4.1
 Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 8/63 (12%)

Query: 7   SLMDPD-TKLIGNMALLPIRSQFKGPAPRETKDTDIVDEAIYYFKANVFFKNYEIKNEAD 65
           SL+DP+ + L+   A +   S       RET DTD  D+ I  FK     KN+    E  
Sbjct: 816 SLVDPNHSGLVTFQAFIDFMS-------RETTDTDTADQVIASFKVLAGDKNFITAEELR 868

Query: 66  RTL 68
           R L
Sbjct: 869 REL 871


>gi|226493203 coiled-coil domain containing 76 [Homo sapiens]
          Length = 481

 Score = 27.7 bits (60), Expect = 5.4
 Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 4/67 (5%)

Query: 72  TLYISECLKKLQKCNSKSQGEKEMYTLGITNFPIPGEPGFPLNAIYAKPANKQEDEVMRA 131
           T+Y  +  K L+KCNS+ + + + Y   I N  +  E   P   +   P +   +E +  
Sbjct: 66  TVYEDQLAKHLKKCNSREKPKPDFYIQDI-NAGLRDETEIPEQLV---PISSLSEEQLEK 121

Query: 132 YLQQLRQ 138
            +++LR+
Sbjct: 122 LIKKLRK 128


>gi|194097352 actinin, alpha 1 isoform c [Homo sapiens]
          Length = 887

 Score = 27.7 bits (60), Expect = 5.4
 Identities = 15/35 (42%), Positives = 18/35 (51%)

Query: 34  RETKDTDIVDEAIYYFKANVFFKNYEIKNEADRTL 68
           RET DTD  D+ +  FK     KNY   +E  R L
Sbjct: 813 RETADTDTADQVMASFKILAGDKNYITMDELRREL 847


>gi|194097350 actinin, alpha 1 isoform a [Homo sapiens]
          Length = 914

 Score = 27.7 bits (60), Expect = 5.4
 Identities = 15/35 (42%), Positives = 18/35 (51%)

Query: 34  RETKDTDIVDEAIYYFKANVFFKNYEIKNEADRTL 68
           RET DTD  D+ +  FK     KNY   +E  R L
Sbjct: 840 RETADTDTADQVMASFKILAGDKNYITMDELRREL 874


>gi|4501891 actinin, alpha 1 isoform b [Homo sapiens]
          Length = 892

 Score = 27.7 bits (60), Expect = 5.4
 Identities = 15/35 (42%), Positives = 18/35 (51%)

Query: 34  RETKDTDIVDEAIYYFKANVFFKNYEIKNEADRTL 68
           RET DTD  D+ +  FK     KNY   +E  R L
Sbjct: 818 RETADTDTADQVMASFKILAGDKNYITMDELRREL 852


>gi|45433552 G protein-coupled receptor 133 [Homo sapiens]
          Length = 874

 Score = 26.9 bits (58), Expect = 9.2
 Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 1/56 (1%)

Query: 56  KNYEIKNEADRTLIYITLYISECLKKLQKCNSKSQGEKEMY-TLGITNFPIPGEPG 110
           K   +K E   TL+Y   Y S C+ K ++C  +       + T G  + PIP   G
Sbjct: 71  KGIYLKEEKGVTLLYYGRYNSSCISKPEQCGPEGVTFSFFWKTQGEQSRPIPSAYG 126


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.318    0.136    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,376,041
Number of Sequences: 37866
Number of extensions: 311468
Number of successful extensions: 681
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 672
Number of HSP's gapped (non-prelim): 11
length of query: 178
length of database: 18,247,518
effective HSP length: 96
effective length of query: 82
effective length of database: 14,612,382
effective search space: 1198215324
effective search space used: 1198215324
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.