Search of human proteins with 48717249

Search of human proteins with 48717249

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|48717249 transmembrane protein 211 [Homo sapiens]
         (129 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|48717249 transmembrane protein 211 [Homo sapiens]                  261   1e-70
gi|38348398 lipoma HMGIC fusion partner-like 4 [Homo sapiens]          44   5e-05
gi|32698930 lipoma HMGIC fusion partner-like 5 [Homo sapiens]          43   6e-05
gi|39752685 lipoma HMGIC fusion partner-like 3 [Homo sapiens]          42   1e-04
gi|32698676 lipoma HMGIC fusion partner-like 2 [Homo sapiens]          42   2e-04
gi|30039704 lipoma HMGIC fusion partner-like 1 [Homo sapiens]          41   2e-04
gi|5031865 lipoma HMGIC fusion partner [Homo sapiens]                  37   0.004
gi|31377722 PERP, TP53 apoptosis effector [Homo sapiens]               27   3.4  
gi|19923957 major facilitator superfamily domain containing 3 [H...    27   3.4  
gi|21389443 transmembrane protein 125 [Homo sapiens]                   27   4.5  
gi|24496763 mucolipin 3 [Homo sapiens]                                 26   9.9  
gi|13376339 plasticity-related protein 2 [Homo sapiens]                26   9.9  
gi|30425553 reticulon 4 receptor-like 1 [Homo sapiens]                 26   9.9  

>gi|48717249 transmembrane protein 211 [Homo sapiens]
          Length = 129

 Score =  261 bits (667), Expect = 1e-70
 Identities = 129/129 (100%), Positives = 129/129 (100%)

Query: 1   MLLGGWLLLAFNAIFLLSWAVAPKGLCPRRSSVPMPGVQAVAATAMIVGLLIFPIGLASP 60
           MLLGGWLLLAFNAIFLLSWAVAPKGLCPRRSSVPMPGVQAVAATAMIVGLLIFPIGLASP
Sbjct: 1   MLLGGWLLLAFNAIFLLSWAVAPKGLCPRRSSVPMPGVQAVAATAMIVGLLIFPIGLASP 60

Query: 61  FIKEVCEASSMYYGGKCRLGWGYMTAILNAVLASLLPIISWPHTTKVQGRTIIFSSATER 120
           FIKEVCEASSMYYGGKCRLGWGYMTAILNAVLASLLPIISWPHTTKVQGRTIIFSSATER
Sbjct: 61  FIKEVCEASSMYYGGKCRLGWGYMTAILNAVLASLLPIISWPHTTKVQGRTIIFSSATER 120

Query: 121 IIFVPEMNK 129
           IIFVPEMNK
Sbjct: 121 IIFVPEMNK 129


>gi|38348398 lipoma HMGIC fusion partner-like 4 [Homo sapiens]
          Length = 247

 Score = 43.5 bits (101), Expect = 5e-05
 Identities = 23/66 (34%), Positives = 39/66 (59%), Gaps = 4/66 (6%)

Query: 38  VQAVAATAMIVGLLIFPIGLASPFIKEVCEASSMYYG-GKCRLGWGYMTA---ILNAVLA 93
           +Q +AA  +++G +IFP G  +  I+++C A +  Y  G C + W Y+ A   ILNA++ 
Sbjct: 131 MQLLAALCLVLGCMIFPDGWDAETIRDMCGAKTGKYSLGDCSVRWAYILAIIGILNALIL 190

Query: 94  SLLPII 99
           S L  +
Sbjct: 191 SFLAFV 196


>gi|32698930 lipoma HMGIC fusion partner-like 5 [Homo sapiens]
          Length = 219

 Score = 43.1 bits (100), Expect = 6e-05
 Identities = 21/65 (32%), Positives = 38/65 (58%), Gaps = 1/65 (1%)

Query: 38  VQAVAATAMIVGLLIFPIGLASPFIKEVC-EASSMYYGGKCRLGWGYMTAILNAVLASLL 96
           +Q  AAT +++G L++P G  S  ++ +C E +  Y  G C + W +M AIL+   A +L
Sbjct: 133 MQLAAATGLMIGCLVYPDGWDSSEVRRMCGEQTGKYTLGHCTIRWAFMLAILSIGDALIL 192

Query: 97  PIISW 101
             +++
Sbjct: 193 SFLAF 197


>gi|39752685 lipoma HMGIC fusion partner-like 3 [Homo sapiens]
          Length = 236

 Score = 42.0 bits (97), Expect = 1e-04
 Identities = 20/65 (30%), Positives = 37/65 (56%), Gaps = 1/65 (1%)

Query: 38  VQAVAATAMIVGLLIFPIGLASPFIKEVC-EASSMYYGGKCRLGWGYMTAILNAVLASLL 96
           +Q  +A  +++G +IFP G  S  +K +C E +  Y  G C + W Y+ AI+  + A +L
Sbjct: 144 MQLTSAACLVLGCMIFPDGWDSDEVKRMCGEKTDKYTLGACSVRWAYILAIIGILDALIL 203

Query: 97  PIISW 101
             +++
Sbjct: 204 SFLAF 208


>gi|32698676 lipoma HMGIC fusion partner-like 2 [Homo sapiens]
          Length = 228

 Score = 41.6 bits (96), Expect = 2e-04
 Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 1/64 (1%)

Query: 38  VQAVAATAMIVGLLIFPIGLASPFIKEVC-EASSMYYGGKCRLGWGYMTAILNAVLASLL 96
           +Q +A   +I+GL+++P G       + C   +S Y  G C LGW + TAI   VL  + 
Sbjct: 139 LQGIAGLFLILGLILYPAGWGCQKAIDYCGHYASAYKPGDCSLGWAFYTAIGGTVLTFIC 198

Query: 97  PIIS 100
            + S
Sbjct: 199 AVFS 202


>gi|30039704 lipoma HMGIC fusion partner-like 1 [Homo sapiens]
          Length = 220

 Score = 41.2 bits (95), Expect = 2e-04
 Identities = 31/91 (34%), Positives = 41/91 (45%), Gaps = 8/91 (8%)

Query: 13  AIFLLSWAVAPKGLCPRRSSVPMPGVQAVAATAMIVGLLI------FPIGLASPFIKEVC 66
           A+ LL    A  G C       M G + + A   + GLLI      +P+G  SP I + C
Sbjct: 93  ALLLLVALAAVLGCCMEELISRMMG-RCMGAAQFVGGLLISSGCALYPLGWNSPEIMQTC 151

Query: 67  -EASSMYYGGKCRLGWGYMTAILNAVLASLL 96
              S+ +  G CRLGW Y  A   A  A L+
Sbjct: 152 GNVSNQFQLGTCRLGWAYYCAGGGAAAAMLI 182


>gi|5031865 lipoma HMGIC fusion partner [Homo sapiens]
          Length = 200

 Score = 37.0 bits (84), Expect = 0.004
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 37  GVQAVAATAMIVGLLIFPIGLASPFIKEVCEASSMYYG-GKCRLGWGYMTAILNAVLASL 95
           G+Q +    +  G  ++P+G  S  +++ C  +S  +  GKC +GW Y      A  A L
Sbjct: 123 GIQFLGGLLIGAGCALYPLGWDSEEVRQTCGYTSGQFDLGKCEIGWAYYCTGAGATAAML 182

Query: 96  L 96
           L
Sbjct: 183 L 183


>gi|31377722 PERP, TP53 apoptosis effector [Homo sapiens]
          Length = 193

 Score = 27.3 bits (59), Expect = 3.4
 Identities = 21/81 (25%), Positives = 33/81 (40%), Gaps = 3/81 (3%)

Query: 1   MLLGGWLLLAFNAIFLLSWAVAPKGLCPRRSSVPMPGVQAVAATAMIVGLLIFPIGLASP 60
           ML  G+++L    I        P+ L   R    + G+ A+AA   I+ L+I+P+     
Sbjct: 80  MLFCGFIILVICFILSFFALCGPQMLVFLRV---IGGLLALAAVFQIISLVIYPVKYTQT 136

Query: 61  FIKEVCEASSMYYGGKCRLGW 81
           F      A +  Y      GW
Sbjct: 137 FTLHANPAVTYIYNWAYGFGW 157


>gi|19923957 major facilitator superfamily domain containing 3 [Homo
           sapiens]
          Length = 412

 Score = 27.3 bits (59), Expect = 3.4
 Identities = 21/86 (24%), Positives = 33/86 (38%), Gaps = 10/86 (11%)

Query: 26  LCPRRSSVPMPGVQAVAATAMIVGLLIFPIGLASPFIKEVCEASSMYYGGKCRLGWGYMT 85
           +C   + +P PG       A + GLL+  + L +       +A ++       LG G   
Sbjct: 80  VCGLLAGLPPPGAGQAGLPAAVAGLLLL-LNLGAAMQDVALDALAVQLLEPAELGPGNTV 138

Query: 86  ---------AILNAVLASLLPIISWP 102
                    A+    L +LLP  SWP
Sbjct: 139 QVVAYKLGAALAGGALLALLPTFSWP 164


>gi|21389443 transmembrane protein 125 [Homo sapiens]
          Length = 219

 Score = 26.9 bits (58), Expect = 4.5
 Identities = 19/75 (25%), Positives = 36/75 (48%), Gaps = 2/75 (2%)

Query: 1   MLLGGWLLLAFNAIFLLSWAVAPKGLCPRRSSVPMPGVQAVAATAMIVGLLIFPIGLASP 60
           +LL G +LL    + L   A AP    P  + + +    A   + +++GLL++ +G+ S 
Sbjct: 117 VLLSGLVLLV-TGLTLAGLAAAPAPARPLAAMLSVGIALAALGSLLLLGLLLYQVGV-SG 174

Query: 61  FIKEVCEASSMYYGG 75
               +C A+   + G
Sbjct: 175 HCPSICMATPSTHSG 189


>gi|24496763 mucolipin 3 [Homo sapiens]
          Length = 553

 Score = 25.8 bits (55), Expect = 9.9
 Identities = 12/32 (37%), Positives = 16/32 (50%)

Query: 50  LLIFPIGLASPFIKEVCEASSMYYGGKCRLGW 81
           LLI  +  A P +   C  ++M Y G C  GW
Sbjct: 400 LLILTLQAALPNVIRFCCCAAMIYLGYCFCGW 431


>gi|13376339 plasticity-related protein 2 [Homo sapiens]
          Length = 746

 Score = 25.8 bits (55), Expect = 9.9
 Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 2/52 (3%)

Query: 30  RSSVPMPGVQA--VAATAMIVGLLIFPIGLASPFIKEVCEASSMYYGGKCRL 79
           R +V   GV    + ATA++  ++    G  +PF   VC+ +    G  C +
Sbjct: 128 RRTVRFVGVHVFGLCATALVTDVIQLATGYHTPFFLTVCKPNYTLLGTSCEV 179


>gi|30425553 reticulon 4 receptor-like 1 [Homo sapiens]
          Length = 441

 Score = 25.8 bits (55), Expect = 9.9
 Identities = 16/37 (43%), Positives = 24/37 (64%), Gaps = 2/37 (5%)

Query: 24  KGLCPRRSSVPMP-GV-QAVAATAMIVGLLIFPIGLA 58
           KG C RR+ +  P GV QA +A+++   LL + +GLA
Sbjct: 401 KGKCARRTPIRAPSGVQQASSASSLGASLLAWTLGLA 437


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.327    0.140    0.445 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,551,044
Number of Sequences: 37866
Number of extensions: 169139
Number of successful extensions: 512
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 499
Number of HSP's gapped (non-prelim): 14
length of query: 129
length of database: 18,247,518
effective HSP length: 90
effective length of query: 39
effective length of database: 14,839,578
effective search space: 578743542
effective search space used: 578743542
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.