RABGGTB 12871

Name: RABGGTB	Sequence: fasta or formatted (331aa)		NCBI GI: 21359854
Description: RAB geranylgeranyltransferase, beta subunit		Referenced in: Prenylation and Related Modifications Rab Small RNAs in RNA Processing
Composition: Amino acid Percentage Count Longest homopolymer A alanine 5.4 18 1 C cysteine 3.6 12 2 D aspartate 6.6 22 2 E glutamate 6.6 22 2 F phenylalanine 3.9 13 1 G glycine 9.1 30 2 H histidine 2.7 9 1 I isoleucine 6.9 23 2 K lysine 4.5 15 2 L leucine 11.5 38 3 M methionine 2.7 9 1 N asparagine 3.0 10 1 P proline 3.9 13 1 Q glutamine 3.9 13 1 R arginine 3.6 12 1 S serine 6.6 22 1 T threonine 3.3 11 1 V valine 6.3 21 2 W tryptophan 2.1 7 2 Y tyrosine 3.3 11 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 RAB geranylgeranyltransferase, beta subunit FNTB 0.183 farnesyltransferase, CAAX box, beta PGGT1B 0.168 geranylgeranyltransferase type 1 beta LSS 0.011 lanosterol synthase isoform 3 LSS 0.011 lanosterol synthase isoform 2 LSS 0.011 lanosterol synthase isoform 1 LSS 0.011 lanosterol synthase isoform 1 GIN1 0.006 zinc finger, H2C2 domain containing Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.