Search of human proteins with 4758152

Search of human proteins with 4758152

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|4758152 translocase of inner mitochondrial membrane 8
homolog A isoform 1 [Homo sapiens]
         (97 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|4758152 translocase of inner mitochondrial membrane 8 homolog...   198   7e-52
gi|225543159 translocase of inner mitochondrial membrane 8 homol...    92   9e-20
gi|239752419 PREDICTED: similar to translocase of inner mitochon...    79   6e-16
gi|239746934 PREDICTED: similar to translocase of inner mitochon...    79   6e-16
gi|6912712 translocase of inner mitochondrial membrane 8 homolog...    78   1e-15
gi|239757907 PREDICTED: similar to translocase of inner mitochon...    74   3e-14
gi|11024700 translocase of inner mitochondrial membrane 13 [Homo...    52   1e-07
gi|6912382 fractured callus expressed transcript 1 [Homo sapiens]      33   0.037
gi|6912708 translocase of inner mitochondrial membrane 10 homolo...    28   1.6  
gi|93277080 hypothetical protein LOC54916 [Homo sapiens]               26   7.8  
gi|34485720 echinoderm microtubule associated protein like 5 [Ho...    26   7.8  

>gi|4758152 translocase of inner mitochondrial membrane 8 homolog
          A isoform 1 [Homo sapiens]
          Length = 97

 Score =  198 bits (504), Expect = 7e-52
 Identities = 97/97 (100%), Positives = 97/97 (100%)

Query: 1  MDSSSSSSAAGLGAVDPQLQHFIEVETQKQRFQQLVHQMTELCWEKCMDKPGPKLDSRAE 60
          MDSSSSSSAAGLGAVDPQLQHFIEVETQKQRFQQLVHQMTELCWEKCMDKPGPKLDSRAE
Sbjct: 1  MDSSSSSSAAGLGAVDPQLQHFIEVETQKQRFQQLVHQMTELCWEKCMDKPGPKLDSRAE 60

Query: 61 ACFVNCVERFIDTSQFILNRLEQTQKSKPVFSESLSD 97
          ACFVNCVERFIDTSQFILNRLEQTQKSKPVFSESLSD
Sbjct: 61 ACFVNCVERFIDTSQFILNRLEQTQKSKPVFSESLSD 97


>gi|225543159 translocase of inner mitochondrial membrane 8
          homolog A isoform 2 [Homo sapiens]
          Length = 48

 Score = 92.0 bits (227), Expect = 9e-20
 Identities = 44/44 (100%), Positives = 44/44 (100%)

Query: 1  MDSSSSSSAAGLGAVDPQLQHFIEVETQKQRFQQLVHQMTELCW 44
          MDSSSSSSAAGLGAVDPQLQHFIEVETQKQRFQQLVHQMTELCW
Sbjct: 1  MDSSSSSSAAGLGAVDPQLQHFIEVETQKQRFQQLVHQMTELCW 44


>gi|239752419 PREDICTED: similar to translocase of inner
           mitochondrial membrane 8 homolog B [Homo sapiens]
          Length = 116

 Score = 79.3 bits (194), Expect = 6e-16
 Identities = 38/82 (46%), Positives = 51/82 (62%), Gaps = 1/82 (1%)

Query: 3   SSSSSSAAGLGAVD-PQLQHFIEVETQKQRFQQLVHQMTELCWEKCMDKPGPKLDSRAEA 61
           S+S+   A LG  D  +LQH +  E QK +F   VH   ELCW+KC++KPG +LDS  E 
Sbjct: 28  SASTELTAELGEADGAELQHLVAAEQQKAQFTAQVHHFMELCWDKCVEKPGNRLDSCTEN 87

Query: 62  CFVNCVERFIDTSQFILNRLEQ 83
           C  +CV+ FIDT+  I +R  Q
Sbjct: 88  CLSSCVDHFIDTTLAITSRFAQ 109


>gi|239746934 PREDICTED: similar to translocase of inner
           mitochondrial membrane 8 homolog B [Homo sapiens]
          Length = 116

 Score = 79.3 bits (194), Expect = 6e-16
 Identities = 38/82 (46%), Positives = 51/82 (62%), Gaps = 1/82 (1%)

Query: 3   SSSSSSAAGLGAVD-PQLQHFIEVETQKQRFQQLVHQMTELCWEKCMDKPGPKLDSRAEA 61
           S+S+   A LG  D  +LQH +  E QK +F   VH   ELCW+KC++KPG +LDS  E 
Sbjct: 28  SASTELTAELGEADGAELQHLVAAEQQKAQFTAQVHHFMELCWDKCVEKPGNRLDSCTEN 87

Query: 62  CFVNCVERFIDTSQFILNRLEQ 83
           C  +CV+ FIDT+  I +R  Q
Sbjct: 88  CLSSCVDHFIDTTLAITSRFAQ 109


>gi|6912712 translocase of inner mitochondrial membrane 8 homolog
          B [Homo sapiens]
          Length = 83

 Score = 78.2 bits (191), Expect = 1e-15
 Identities = 37/75 (49%), Positives = 48/75 (64%), Gaps = 1/75 (1%)

Query: 10 AGLGAVDP-QLQHFIEVETQKQRFQQLVHQMTELCWEKCMDKPGPKLDSRAEACFVNCVE 68
          A LG  D  +LQ  +  E QK +F   VH   ELCW+KC++KPG +LDSR E C  +CV+
Sbjct: 2  AELGEADEAELQRLVAAEQQKAQFTAQVHHFMELCWDKCVEKPGNRLDSRTENCLSSCVD 61

Query: 69 RFIDTSQFILNRLEQ 83
          RFIDT+  I +R  Q
Sbjct: 62 RFIDTTLAITSRFAQ 76


>gi|239757907 PREDICTED: similar to translocase of inner
           mitochondrial membrane 8 homolog B (yeast) [Homo
           sapiens]
          Length = 136

 Score = 73.9 bits (180), Expect = 3e-14
 Identities = 35/75 (46%), Positives = 46/75 (61%), Gaps = 1/75 (1%)

Query: 10  AGLGAVD-PQLQHFIEVETQKQRFQQLVHQMTELCWEKCMDKPGPKLDSRAEACFVNCVE 68
           A LG  D  + QH +  E QK +F   VH   ELCW+KC++KPG +LDS  E C  +CV+
Sbjct: 55  AELGEADGAESQHLVAAEQQKAQFTAQVHHFMELCWDKCVEKPGNRLDSCTENCLSSCVD 114

Query: 69  RFIDTSQFILNRLEQ 83
            FIDT+  I +R  Q
Sbjct: 115 HFIDTTLAITSRFAQ 129


>gi|11024700 translocase of inner mitochondrial membrane 13 [Homo
          sapiens]
          Length = 95

 Score = 52.0 bits (123), Expect = 1e-07
 Identities = 23/69 (33%), Positives = 40/69 (57%), Gaps = 1/69 (1%)

Query: 5  SSSSAAGLGAVDPQL-QHFIEVETQKQRFQQLVHQMTELCWEKCMDKPGPKLDSRAEACF 63
          S    +G G +DP L    ++V+      Q+L+ +MT+ C+ KC+ KPG  LD+  + C 
Sbjct: 7  SDFGGSGSGKLDPGLIMEQVKVQIAVANAQELLQRMTDKCFRKCIGKPGGSLDNSEQKCI 66

Query: 64 VNCVERFID 72
            C++R++D
Sbjct: 67 AMCMDRYMD 75


>gi|6912382 fractured callus expressed transcript 1 [Homo sapiens]
          Length = 103

 Score = 33.5 bits (75), Expect = 0.037
 Identities = 19/64 (29%), Positives = 36/64 (56%), Gaps = 10/64 (15%)

Query: 25 VETQKQRFQQL---------VHQMTELCWEKCMDKPGPK-LDSRAEACFVNCVERFIDTS 74
          +E Q+Q+ QQL          ++MTELC+++C+     + LD+  EAC  +C  + I ++
Sbjct: 1  MERQQQQQQQLRNLRDFLLVYNRMTELCFQRCVPSLHHRALDAEEEACLHSCAGKLIHSN 60

Query: 75 QFIL 78
            ++
Sbjct: 61 HRLM 64


>gi|6912708 translocase of inner mitochondrial membrane 10 homolog
          [Homo sapiens]
          Length = 90

 Score = 28.1 bits (61), Expect = 1.6
 Identities = 14/71 (19%), Positives = 30/71 (42%), Gaps = 2/71 (2%)

Query: 15 VDPQLQHFIEVETQKQRFQQLVHQMTELCWEKCMDK--PGPKLDSRAEACFVNCVERFID 72
          +DP     +  E + +    + ++MT  C  KC+       +L      C   CV +++D
Sbjct: 1  MDPLRAQQLAAELEVEMMADMYNRMTSACHRKCVPPHYKEAELSKGESVCLDRCVSKYLD 60

Query: 73 TSQFILNRLEQ 83
            + +  +L +
Sbjct: 61 IHERMGKKLTE 71


>gi|93277080 hypothetical protein LOC54916 [Homo sapiens]
          Length = 707

 Score = 25.8 bits (55), Expect = 7.8
 Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 1/86 (1%)

Query: 13  GAVDPQLQHFIEVETQKQRFQQLVHQMTELCWEKCMDK-PGPKLDSRAEACFVNCVERFI 71
           G V   L HF+EV  QK+ F  +     +  W+K     P    D       V   E +I
Sbjct: 501 GMVTFNLYHFLEVNKQKETFVCIGIHEGDPTWKKNYSLWPWGSCDKLVPLEIVFNPEEWI 560

Query: 72  DTSQFILNRLEQTQKSKPVFSESLSD 97
             ++ I N  E+  +  P   ES+++
Sbjct: 561 KLTKSIYNWTEEYGRFDPSSWESVAN 586


>gi|34485720 echinoderm microtubule associated protein like 5 [Homo
           sapiens]
          Length = 1977

 Score = 25.8 bits (55), Expect = 7.8
 Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 5/49 (10%)

Query: 2   DSSSSSSAAGLGAVDPQLQHFIEVETQ----KQRFQQLVHQMTELCWEK 46
           DS S  S + L  V P+L   IE ETQ    +Q +++ + Q+ E C EK
Sbjct: 613 DSHSDESDSDLSDV-PELDSEIEQETQLTYRRQVYKEDLPQLKEQCKEK 660


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.317    0.128    0.375 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,502,004
Number of Sequences: 37866
Number of extensions: 128360
Number of successful extensions: 340
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 329
Number of HSP's gapped (non-prelim): 11
length of query: 97
length of database: 18,247,518
effective HSP length: 68
effective length of query: 29
effective length of database: 15,672,630
effective search space: 454506270
effective search space used: 454506270
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.