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Search of human proteins with 4757816
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4757816 ATPase, H+ transporting, lysosomal 21kDa, V0 subunit
b isoform 1 [Homo sapiens]
(205 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4757816 ATPase, H+ transporting, lysosomal 21kDa, V0 subunit ... 407 e-114
gi|86792634 ATPase, H+ transporting, lysosomal 21kDa, V0 subunit... 310 7e-85
gi|4502313 ATPase, H+ transporting, lysosomal, V0 subunit c [Hom... 92 2e-19
gi|4759144 solute carrier family 9 (sodium/hydrogen exchanger), ... 37 0.012
gi|4557535 solute carrier family 26, member 3 [Homo sapiens] 31 0.84
gi|50659069 ATP synthase, H+ transporting, mitochondrial F0 comp... 29 2.4
gi|4885081 ATP synthase, H+ transporting, mitochondrial F0 compl... 29 2.4
gi|85794840 ATP synthase, H+ transporting, mitochondrial F0 comp... 29 2.4
gi|4502301 ATP synthase, H+ transporting, mitochondrial F0 compl... 29 2.4
gi|50659074 ATP synthase, H+ transporting, mitochondrial F0 comp... 29 2.4
gi|50593533 ATP synthase, H+ transporting, mitochondrial F0 comp... 29 2.4
gi|155722985 SMC5 protein [Homo sapiens] 29 3.2
gi|206597487 solute carrier family 5 (sodium/glucose cotransport... 28 7.1
gi|206597483 solute carrier family 5 (sodium/glucose cotransport... 28 7.1
gi|148277022 selenoprotein P isoform 2 [Homo sapiens] 27 9.3
gi|4507033 solute carrier family 5 (sodium/glucose cotransporter... 27 9.3
>gi|4757816 ATPase, H+ transporting, lysosomal 21kDa, V0 subunit b
isoform 1 [Homo sapiens]
Length = 205
Score = 407 bits (1047), Expect = e-114
Identities = 205/205 (100%), Positives = 205/205 (100%)
Query: 1 MTGLALLYSGVFVAFWACALAVGVCYTIFDLGFRFDVAWFLTETSPFMWSNLGIGLAISL 60
MTGLALLYSGVFVAFWACALAVGVCYTIFDLGFRFDVAWFLTETSPFMWSNLGIGLAISL
Sbjct: 1 MTGLALLYSGVFVAFWACALAVGVCYTIFDLGFRFDVAWFLTETSPFMWSNLGIGLAISL 60
Query: 61 SVVGAAWGIYITGSSIIGGGVKAPRIKTKNLVSIIFCEAVAIYGIIMAIVISNMAEPFSA 120
SVVGAAWGIYITGSSIIGGGVKAPRIKTKNLVSIIFCEAVAIYGIIMAIVISNMAEPFSA
Sbjct: 61 SVVGAAWGIYITGSSIIGGGVKAPRIKTKNLVSIIFCEAVAIYGIIMAIVISNMAEPFSA 120
Query: 121 TDPKAIGHRNYHAGYSMFGAGLTVGLSNLFCGVCVGIVGSGAALADAQNPSLFVKILIVE 180
TDPKAIGHRNYHAGYSMFGAGLTVGLSNLFCGVCVGIVGSGAALADAQNPSLFVKILIVE
Sbjct: 121 TDPKAIGHRNYHAGYSMFGAGLTVGLSNLFCGVCVGIVGSGAALADAQNPSLFVKILIVE 180
Query: 181 IFGSAIGLFGVIVAILQTSRVKMGD 205
IFGSAIGLFGVIVAILQTSRVKMGD
Sbjct: 181 IFGSAIGLFGVIVAILQTSRVKMGD 205
>gi|86792634 ATPase, H+ transporting, lysosomal 21kDa, V0 subunit b
isoform 2 [Homo sapiens]
Length = 158
Score = 310 bits (793), Expect = 7e-85
Identities = 158/158 (100%), Positives = 158/158 (100%)
Query: 48 MWSNLGIGLAISLSVVGAAWGIYITGSSIIGGGVKAPRIKTKNLVSIIFCEAVAIYGIIM 107
MWSNLGIGLAISLSVVGAAWGIYITGSSIIGGGVKAPRIKTKNLVSIIFCEAVAIYGIIM
Sbjct: 1 MWSNLGIGLAISLSVVGAAWGIYITGSSIIGGGVKAPRIKTKNLVSIIFCEAVAIYGIIM 60
Query: 108 AIVISNMAEPFSATDPKAIGHRNYHAGYSMFGAGLTVGLSNLFCGVCVGIVGSGAALADA 167
AIVISNMAEPFSATDPKAIGHRNYHAGYSMFGAGLTVGLSNLFCGVCVGIVGSGAALADA
Sbjct: 61 AIVISNMAEPFSATDPKAIGHRNYHAGYSMFGAGLTVGLSNLFCGVCVGIVGSGAALADA 120
Query: 168 QNPSLFVKILIVEIFGSAIGLFGVIVAILQTSRVKMGD 205
QNPSLFVKILIVEIFGSAIGLFGVIVAILQTSRVKMGD
Sbjct: 121 QNPSLFVKILIVEIFGSAIGLFGVIVAILQTSRVKMGD 158
>gi|4502313 ATPase, H+ transporting, lysosomal, V0 subunit c [Homo
sapiens]
Length = 155
Score = 92.4 bits (228), Expect = 2e-19
Identities = 49/149 (32%), Positives = 85/149 (57%), Gaps = 10/149 (6%)
Query: 52 LGIGLAISLSVVGAAWGIYITGSSIIGGGVKAPRIKTKNLVSIIFCEAVAIYGIIMAIVI 111
+G A+ S +GAA+G +G+ I V P K+++ ++ +AIYG+++A++I
Sbjct: 17 MGASAAMVFSALGAAYGTAKSGTGIAAMSVMRPEQIMKSIIPVVMAGIIAIYGLVVAVLI 76
Query: 112 SNMAEPFSATDPKAIGHRNYHAGYSMFGAGLTVGLSNLFCGVCVGIVGSGAALADAQNPS 171
+N S D ++ + + GAGL+VGLS L G +GIVG AQ P
Sbjct: 77 AN-----SLNDDISL-----YKSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPR 126
Query: 172 LFVKILIVEIFGSAIGLFGVIVAILQTSR 200
LFV ++++ IF +GL+G+IVA++ +++
Sbjct: 127 LFVGMILILIFAEVLGLYGLIVALILSTK 155
Score = 31.6 bits (70), Expect = 0.49
Identities = 16/66 (24%), Positives = 30/66 (45%)
Query: 131 YHAGYSMFGAGLTVGLSNLFCGVCVGIVGSGAALADAQNPSLFVKILIVEIFGSAIGLFG 190
Y + +++ GA + S L G+G A P +K +I + I ++G
Sbjct: 10 YASFFAVMGASAAMVFSALGAAYGTAKSGTGIAAMSVMRPEQIMKSIIPVVMAGIIAIYG 69
Query: 191 VIVAIL 196
++VA+L
Sbjct: 70 LVVAVL 75
>gi|4759144 solute carrier family 9 (sodium/hydrogen exchanger),
isoform 5 [Homo sapiens]
Length = 896
Score = 37.0 bits (84), Expect = 0.012
Identities = 45/184 (24%), Positives = 76/184 (41%), Gaps = 32/184 (17%)
Query: 33 FRFDVAWFLTETSPFMWSNL---GIGLAISLSVVGAAWGIYITGSSIIG---GGVKAPRI 86
F F + + ++ FM S L +G ++ +VVG W + TG+++ G G+ APR+
Sbjct: 108 FLFLLPPIVLDSGYFMPSRLFFDNLGAILTYAVVGTLWNAFTTGAALWGLQQAGLVAPRV 167
Query: 87 KTKNLVSIIFCEAVAIYGIIMAIVISNMAEPFSATDPKAI------GHRNYHAGYSMFGA 140
+ L ++F + SA DP A+ H N +FG
Sbjct: 168 QAGLLDFLLFGSLI------------------SAVDPVAVLAVFEEVHVNETLFIIVFGE 209
Query: 141 G-LTVGLSNLFCGVCVGIVGSGAALADAQNPSLFV-KILIVEIFGSAIGLFGVIVAILQT 198
L ++ + VC V G+A A + V + +V + G+A+GL + L T
Sbjct: 210 SLLNDAVTVVLYKVCNSFVEMGSANVQATDYLKGVASLFVVSLGGAAVGLVFAFLLALTT 269
Query: 199 SRVK 202
K
Sbjct: 270 RFTK 273
>gi|4557535 solute carrier family 26, member 3 [Homo sapiens]
Length = 764
Score = 30.8 bits (68), Expect = 0.84
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Query: 142 LTVGLSNLFCGVCVGIVGSGAALADAQNPSLFVKILIVEIFGSAIGL-----FGVIVAIL 196
+ +GL N+ CGV G GS A A S K I + G+ I L G ++A L
Sbjct: 376 IALGLGNIVCGVFRGFAGSTALSRSAVQESTGGKTQIAGLIGAIIVLIVVLAIGFLLAPL 435
Query: 197 QTS 199
Q S
Sbjct: 436 QKS 438
>gi|50659069 ATP synthase, H+ transporting, mitochondrial F0
complex, subunit C1 precursor [Homo sapiens]
Length = 136
Score = 29.3 bits (64), Expect = 2.4
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 7/73 (9%)
Query: 129 RNYHAGYSMFGAGL-TVGLSNLFCGVCVGIVGSGAALADAQNPSLFVKILIVEIFG---- 183
R+ GAG TVG++ G +G V + A+NPSL ++ I G
Sbjct: 61 RDIDTAAKFIGAGAATVGVAG--SGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALS 118
Query: 184 SAIGLFGVIVAIL 196
A+GLF ++VA L
Sbjct: 119 EAMGLFCLMVAFL 131
>gi|4885081 ATP synthase, H+ transporting, mitochondrial F0 complex,
subunit C1 precursor [Homo sapiens]
Length = 136
Score = 29.3 bits (64), Expect = 2.4
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 7/73 (9%)
Query: 129 RNYHAGYSMFGAGL-TVGLSNLFCGVCVGIVGSGAALADAQNPSLFVKILIVEIFG---- 183
R+ GAG TVG++ G +G V + A+NPSL ++ I G
Sbjct: 61 RDIDTAAKFIGAGAATVGVAG--SGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALS 118
Query: 184 SAIGLFGVIVAIL 196
A+GLF ++VA L
Sbjct: 119 EAMGLFCLMVAFL 131
>gi|85794840 ATP synthase, H+ transporting, mitochondrial F0
complex, subunit C2 isoform b precursor [Homo sapiens]
Length = 198
Score = 29.3 bits (64), Expect = 2.4
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 7/73 (9%)
Query: 129 RNYHAGYSMFGAGL-TVGLSNLFCGVCVGIVGSGAALADAQNPSLFVKILIVEIFG---- 183
R+ GAG TVG++ G +G V + A+NPSL ++ I G
Sbjct: 123 RDIDTAAKFIGAGAATVGVAG--SGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALS 180
Query: 184 SAIGLFGVIVAIL 196
A+GLF ++VA L
Sbjct: 181 EAMGLFCLMVAFL 193
>gi|4502301 ATP synthase, H+ transporting, mitochondrial F0 complex,
subunit C3 precursor [Homo sapiens]
Length = 142
Score = 29.3 bits (64), Expect = 2.4
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 7/73 (9%)
Query: 129 RNYHAGYSMFGAGL-TVGLSNLFCGVCVGIVGSGAALADAQNPSLFVKILIVEIFG---- 183
R+ GAG TVG++ G +G V + A+NPSL ++ I G
Sbjct: 67 RDIDTAAKFIGAGAATVGVAG--SGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALS 124
Query: 184 SAIGLFGVIVAIL 196
A+GLF ++VA L
Sbjct: 125 EAMGLFCLMVAFL 137
>gi|50659074 ATP synthase, H+ transporting, mitochondrial F0
complex, subunit C3 precursor [Homo sapiens]
Length = 142
Score = 29.3 bits (64), Expect = 2.4
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 7/73 (9%)
Query: 129 RNYHAGYSMFGAGL-TVGLSNLFCGVCVGIVGSGAALADAQNPSLFVKILIVEIFG---- 183
R+ GAG TVG++ G +G V + A+NPSL ++ I G
Sbjct: 67 RDIDTAAKFIGAGAATVGVAG--SGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALS 124
Query: 184 SAIGLFGVIVAIL 196
A+GLF ++VA L
Sbjct: 125 EAMGLFCLMVAFL 137
>gi|50593533 ATP synthase, H+ transporting, mitochondrial F0
complex, subunit C2 isoform a precursor [Homo sapiens]
Length = 157
Score = 29.3 bits (64), Expect = 2.4
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 7/73 (9%)
Query: 129 RNYHAGYSMFGAGL-TVGLSNLFCGVCVGIVGSGAALADAQNPSLFVKILIVEIFG---- 183
R+ GAG TVG++ G +G V + A+NPSL ++ I G
Sbjct: 82 RDIDTAAKFIGAGAATVGVAG--SGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALS 139
Query: 184 SAIGLFGVIVAIL 196
A+GLF ++VA L
Sbjct: 140 EAMGLFCLMVAFL 152
>gi|155722985 SMC5 protein [Homo sapiens]
Length = 1101
Score = 28.9 bits (63), Expect = 3.2
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 145 GLSNLFCGVCVGIVGSGAALADAQNPSLFVK 175
G S++ C +C+G+ G A + A FVK
Sbjct: 85 GKSSIVCAICLGLAGKPAFMGRADKVGFFVK 115
>gi|206597487 solute carrier family 5 (sodium/glucose
cotransporter), member 9 isoform 1 [Homo sapiens]
Length = 706
Score = 27.7 bits (60), Expect = 7.1
Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 9/79 (11%)
Query: 3 GLALLYSGVFVAFWACALAVGVCYTIF----DLGFRF----DVAWFLTETSPFMWSNLGI 54
GL V V ++ +AVG+ +I +G F ++W+ S M SN+G
Sbjct: 32 GLHAYDISVVVIYFVFVIAVGIWSSIRASRGTIGGYFLAGRSMSWWPIGAS-LMSSNVGS 90
Query: 55 GLAISLSVVGAAWGIYITG 73
GL I L+ GAA G+ + G
Sbjct: 91 GLFIGLAGTGAAGGLAVGG 109
>gi|206597483 solute carrier family 5 (sodium/glucose
cotransporter), member 9 isoform 2 [Homo sapiens]
Length = 681
Score = 27.7 bits (60), Expect = 7.1
Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 9/79 (11%)
Query: 3 GLALLYSGVFVAFWACALAVGVCYTIF----DLGFRF----DVAWFLTETSPFMWSNLGI 54
GL V V ++ +AVG+ +I +G F ++W+ S M SN+G
Sbjct: 32 GLHAYDISVVVIYFVFVIAVGIWSSIRASRGTIGGYFLAGRSMSWWPIGAS-LMSSNVGS 90
Query: 55 GLAISLSVVGAAWGIYITG 73
GL I L+ GAA G+ + G
Sbjct: 91 GLFIGLAGTGAAGGLAVGG 109
>gi|148277022 selenoprotein P isoform 2 [Homo sapiens]
Length = 411
Score = 27.3 bits (59), Expect = 9.3
Identities = 10/20 (50%), Positives = 15/20 (75%)
Query: 41 LTETSPFMWSNLGIGLAISL 60
+T T+P MW +LG+ LA+ L
Sbjct: 24 ITRTTPAMWRSLGLALALCL 43
>gi|4507033 solute carrier family 5 (sodium/glucose cotransporter),
member 2 [Homo sapiens]
Length = 672
Score = 27.3 bits (59), Expect = 9.3
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 6/66 (9%)
Query: 133 AGYSM--FGAGLTVGLSNLFCGVCVGIVGSGA----ALADAQNPSLFVKILIVEIFGSAI 186
AG SM + G ++ SN+ G VG+ G+GA A+A + +LFV +L+ +F
Sbjct: 58 AGRSMVWWPVGASLFASNIGSGHFVGLAGTGAASGLAVAGFEWNALFVVLLLGWLFAPVY 117
Query: 187 GLFGVI 192
GVI
Sbjct: 118 LTAGVI 123
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.328 0.143 0.441
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,541,565
Number of Sequences: 37866
Number of extensions: 255078
Number of successful extensions: 582
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 570
Number of HSP's gapped (non-prelim): 20
length of query: 205
length of database: 18,247,518
effective HSP length: 97
effective length of query: 108
effective length of database: 14,574,516
effective search space: 1574047728
effective search space used: 1574047728
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.