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Search of human proteins with 47458811
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|47458811 sideroflexin 4 [Homo sapiens]
(337 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|47458811 sideroflexin 4 [Homo sapiens] 669 0.0
gi|21389351 sideroflexin 5 [Homo sapiens] 118 7e-27
gi|23618867 sideroflexin 1 [Homo sapiens] 84 2e-16
gi|30578418 sideroflexin 2 [Homo sapiens] 74 2e-13
gi|31621303 sideroflexin 3 [Homo sapiens] 72 5e-13
gi|31317295 calcium-activated potassium channel beta 2 subunit [... 30 3.1
gi|5031823 calcium-activated potassium channel beta 2 subunit [H... 30 3.1
gi|239740898 PREDICTED: hypothetical protein [Homo sapiens] 29 5.2
gi|239754269 PREDICTED: hypothetical protein [Homo sapiens] 29 6.8
gi|169168665 PREDICTED: hypothetical protein [Homo sapiens] 29 6.8
gi|113417486 PREDICTED: hypothetical protein [Homo sapiens] 29 6.8
gi|239740827 PREDICTED: hypothetical protein XP_002344067 [Homo ... 29 6.8
gi|239740777 PREDICTED: hypothetical protein [Homo sapiens] 29 6.8
gi|239740724 PREDICTED: hypothetical protein [Homo sapiens] 29 6.8
gi|239740674 PREDICTED: hypothetical protein [Homo sapiens] 29 6.8
gi|239740645 PREDICTED: hypothetical protein [Homo sapiens] 29 6.8
gi|239513940 PREDICTED: hypothetical protein [Homo sapiens] 29 6.8
>gi|47458811 sideroflexin 4 [Homo sapiens]
Length = 337
Score = 669 bits (1725), Expect = 0.0
Identities = 337/337 (100%), Positives = 337/337 (100%)
Query: 1 MSLEQEEETQPGRLLGRRDAVPAFIEPNVRFWITERQSFIRRFLQWTELLDPTNVFISVE 60
MSLEQEEETQPGRLLGRRDAVPAFIEPNVRFWITERQSFIRRFLQWTELLDPTNVFISVE
Sbjct: 1 MSLEQEEETQPGRLLGRRDAVPAFIEPNVRFWITERQSFIRRFLQWTELLDPTNVFISVE 60
Query: 61 SIENSRQLLCTNEDVSSPASADQRIQEAWKRSLATVHPDSSNLIPKLFRPAAFLPFMAPT 120
SIENSRQLLCTNEDVSSPASADQRIQEAWKRSLATVHPDSSNLIPKLFRPAAFLPFMAPT
Sbjct: 61 SIENSRQLLCTNEDVSSPASADQRIQEAWKRSLATVHPDSSNLIPKLFRPAAFLPFMAPT 120
Query: 121 VFLSMTPLKGIKSVILPQVFLCAYMAAFNSINGNRSYTCKPLERSLLMAGAVASSTFLGV 180
VFLSMTPLKGIKSVILPQVFLCAYMAAFNSINGNRSYTCKPLERSLLMAGAVASSTFLGV
Sbjct: 121 VFLSMTPLKGIKSVILPQVFLCAYMAAFNSINGNRSYTCKPLERSLLMAGAVASSTFLGV 180
Query: 181 IPQFVQMKYGLTGPWIKRLLPVIFLVQASGMNVYMSRSLESIKGIAVMDKEGNVLGHSRI 240
IPQFVQMKYGLTGPWIKRLLPVIFLVQASGMNVYMSRSLESIKGIAVMDKEGNVLGHSRI
Sbjct: 181 IPQFVQMKYGLTGPWIKRLLPVIFLVQASGMNVYMSRSLESIKGIAVMDKEGNVLGHSRI 240
Query: 241 AGTKAVRETLASRIVLFGTSALIPEVFTYFFKRTQYFRKNPGSLWILKLSCTVLAMGLMV 300
AGTKAVRETLASRIVLFGTSALIPEVFTYFFKRTQYFRKNPGSLWILKLSCTVLAMGLMV
Sbjct: 241 AGTKAVRETLASRIVLFGTSALIPEVFTYFFKRTQYFRKNPGSLWILKLSCTVLAMGLMV 300
Query: 301 PFSFSIFPQIGQIQYCSLEEKIQSPTEETEIFYHRGV 337
PFSFSIFPQIGQIQYCSLEEKIQSPTEETEIFYHRGV
Sbjct: 301 PFSFSIFPQIGQIQYCSLEEKIQSPTEETEIFYHRGV 337
>gi|21389351 sideroflexin 5 [Homo sapiens]
Length = 340
Score = 118 bits (296), Expect = 7e-27
Identities = 86/314 (27%), Positives = 152/314 (48%), Gaps = 17/314 (5%)
Query: 35 ERQSFIRRFLQWTELLDPTNVFISVESIENSRQLLCTNEDVSS----PASADQRIQEAWK 90
++ SF RF + +++DP +F++ + + QLL ED P ++++ A K
Sbjct: 33 QQTSFYGRFRHFLDIIDPRTLFVTERRLREAVQLL---EDYKHGTLRPGVTNEQLWSAQK 89
Query: 91 RSLATVHPDSSNLIPKLFRPAAFLPFMAPTVFLSMTPLKGIKSVILPQVFLCAYMAAFNS 150
A +HPD++ I FR + ++PF P V + P + + S + Q ++ A N
Sbjct: 90 IKQAILHPDTNEKIFMPFRMSGYIPFGTPIVVGLLLPNQTLASTVFWQWLNQSHNACVNY 149
Query: 151 INGNRSYTCKPLERSLLMAG-------AVASSTFLGVIPQFVQMKYGLTGPWIKRLLPVI 203
N N + KP S + G AV+ + L V+ Q T I+R +P
Sbjct: 150 ANRNAT---KPSPASKFIQGYLGAVISAVSIAVGLNVLVQKANKFTPATRLLIQRFVPFP 206
Query: 204 FLVQASGMNVYMSRSLESIKGIAVMDKEGNVLGHSRIAGTKAVRETLASRIVLFGTSALI 263
+ A+ NV + R E +GI V+D +GN++G S+IA A+ ET +R+VL ++
Sbjct: 207 AVASANICNVVLMRYGELEEGIDVLDSDGNLVGSSKIAARHALLETALTRVVLPMPILVL 266
Query: 264 PEVFTYFFKRTQYFRKNPGSLWILKLSCTVLAMGLMVPFSFSIFPQIGQIQYCSLEEKIQ 323
P + ++T + P L ++ + A GL +P + S+FPQ+ +I+ LE +I
Sbjct: 267 PPIVMSMLEKTALLQARPRLLLPVQSLVCLAAFGLALPLAISLFPQMSEIETSQLEPEIA 326
Query: 324 SPTEETEIFYHRGV 337
T + Y++G+
Sbjct: 327 QATSSRTVVYNKGL 340
>gi|23618867 sideroflexin 1 [Homo sapiens]
Length = 322
Score = 84.0 bits (206), Expect = 2e-16
Identities = 69/313 (22%), Positives = 141/313 (45%), Gaps = 17/313 (5%)
Query: 35 ERQSFIRRFLQWTELLDPTNVFISVESIENSRQLLCT-NEDVSSPASADQRIQEAWKRSL 93
++ +FI R + + DP N+ ++ E +E++R+++ + + P + + A
Sbjct: 17 DQSTFIGRANHFFTVTDPRNILLTNEQLESARKIVHDYRQGIVPPGLTENELWRAKYIYD 76
Query: 94 ATVHPDSSNLIPKLFRPAAFLPFMAPTVFLSMTPLKGIKSVILPQVFLCAYMAAFNSIN- 152
+ HPD+ + + R +A +P MT + +V+ Q ++ A N N
Sbjct: 77 SAFHPDTGEKMILIGRMSAQVPMNMTITGCMMTFYRTTPAVLFWQWINQSFNAVVNYTNR 136
Query: 153 -GNRSYTCKPLERSLLMA--GAVASSTFLGVIPQFVQMKYGLTGPWIKRLLPVIFLVQAS 209
G+ T L + + A GAVA++ L + + V P I R +P + A+
Sbjct: 137 SGDAPLTVNELGTAYVSATTGAVATALGLNALTKHVS-------PLIGRFVPFAAVAAAN 189
Query: 210 GMNVYMSRSLESIKGIAVMDKEGNVLGHSRIAGTKAVRETLASRIVLFGTSALIPEVFTY 269
+N+ + R E GI V D+ GN LG S A +A+ + + SRI++ IP
Sbjct: 190 CINIPLMRQRELKVGIPVTDENGNRLGESANAAKQAITQVVVSRILMAAPGMAIPPFIMN 249
Query: 270 FFKRTQYFRKNPGSLWILKLSCTVLAMGLMVPFSFSIFPQIGQIQYCSLEEKIQSPTEET 329
++ + ++ P +++ + P ++FPQ + SLE ++Q+ +E+
Sbjct: 250 TLEKKAFLKRFPWMSAPIQVGLVGFCLVFATPLCCALFPQKSSMSVTSLEAELQAKIQES 309
Query: 330 -----EIFYHRGV 337
+++++G+
Sbjct: 310 HPELRRVYFNKGL 322
>gi|30578418 sideroflexin 2 [Homo sapiens]
Length = 322
Score = 73.6 bits (179), Expect = 2e-13
Identities = 69/315 (21%), Positives = 140/315 (44%), Gaps = 20/315 (6%)
Query: 35 ERQSFIRRFLQWTELLDPTNVFISVESIENSRQLLCTNE-DVSSPASADQRIQEAWKRSL 93
++++F+ R + + DP VF+S ++ ++ ++ + V P + +++ A K
Sbjct: 16 DQRTFLGRVKHFLNITDPRTVFVSERELDWAKVMVEKSRMGVVPPGTQVEQLLYAKKLYD 75
Query: 94 ATVHPDSSNLIPKLFRPAAFLPFMAPTVFLSMTPLKGIKSVILPQVFLCAYMAAFNSING 153
+ HPD+ + + R + LP + + + +VI Q ++ A N N
Sbjct: 76 SAFHPDTGEKMNVIGRMSFQLPGGMIITGFMLQFYRTMPAVIFWQWVNQSFNALVNYTNR 135
Query: 154 NRSY--TCKPLERSLLMAGAVASSTFLGVIPQFVQMKYGLTGPWIKRLLPVIFLVQASGM 211
N + + + + S A A +T +G+ M P + R +P + A+ +
Sbjct: 136 NAASPTSVRQMALSYFTATTTAVATAVGM-----NMLTKKAPPLVGRWVPFAAVAAANCV 190
Query: 212 NVYMSRSLESIKGIAVMDKEGNVLGHSRIAGTKAVRETLASRIVLFGTSALIPEVFTYFF 271
N+ M R E IKGI V D+ N +GHSR A + + + SRI + ++ V
Sbjct: 191 NIPMMRQQELIKGICVKDRNENEIGHSRRAAAIGITQVVISRITMSAPGMILLPVIMERL 250
Query: 272 KRTQYFRKNP---GSLWILKLSCTVLAMGLMVPFSFSIFPQIGQIQYCSLEEKIQSPTE- 327
++ + +K L ++ C ++ MVP + +FPQ ++ LE K+Q +
Sbjct: 251 EKLHFMQKVKVLHAPLQVMLSGCFLI---FMVPVACGLFPQKCELPVSYLEPKLQDTIKA 307
Query: 328 -----ETEIFYHRGV 337
E +++++G+
Sbjct: 308 KYGELEPYVYFNKGL 322
>gi|31621303 sideroflexin 3 [Homo sapiens]
Length = 325
Score = 72.4 bits (176), Expect = 5e-13
Identities = 67/312 (21%), Positives = 137/312 (43%), Gaps = 15/312 (4%)
Query: 35 ERQSFIRRFLQWTELLDPTNVFISVESIENSRQLLCT-NEDVSSPASADQRIQEAWKRSL 93
++ +F+ R + + DP N+ +S +E SR ++ V +P + ++ A
Sbjct: 20 DQSTFLGRARHFFTVTDPRNLLLSGAQLEASRNIVQNYRAGVVTPGITEDQLWRAKYVYD 79
Query: 94 ATVHPDSSNLIPKLFRPAAFLPFMAPTVFLSMTPLKGIKSVILPQVFLCAYMAAFNSIN- 152
+ HPD+ + + R +A +P +T + +V+ Q ++ A N N
Sbjct: 80 SAFHPDTGEKVVLIGRMSAQVPMNMTITGCMLTFYRKTPTVVFWQWVNQSFNAIVNYSNR 139
Query: 153 -GNRSYTCKPLERSLLMAGAVASSTFLGVIPQFVQMKYGLTGPWIKRLLPVIFLVQASGM 211
G+ T + L + + A A +T LG+ + P + R +P + A+ +
Sbjct: 140 SGDTPITVRQLGTAYVSATTGAVATALGLKSLTKHLP-----PLVGRFVPFAAVAAANCI 194
Query: 212 NVYMSRSLESIKGIAVMDKEGNVLGHSRIAGTKAVRETLASRIVLFGTSALIPEVFTYFF 271
N+ + R E GI V D+ G LG+S A + + + + SRI + + IP +
Sbjct: 195 NIPLMRQRELQVGIPVADEAGQRLGYSVTAAKQGIFQVVISRICMAIPAMAIPPLIMDTL 254
Query: 272 KRTQYFRKNPGSLWILKLSCTVLAMGLMVPFSFSIFPQIGQIQYCSLEEKI------QSP 325
++ + ++ P L++ + P ++FPQ I +LE ++ Q+P
Sbjct: 255 EKKDFLKRRPWLGAPLQVGLVGFCLVFATPLCCALFPQKSSIHISNLEPELRAQIHEQNP 314
Query: 326 TEETEIFYHRGV 337
+ E ++Y++G+
Sbjct: 315 SVEV-VYYNKGL 325
>gi|31317295 calcium-activated potassium channel beta 2 subunit
[Homo sapiens]
Length = 235
Score = 30.0 bits (66), Expect = 3.1
Identities = 22/86 (25%), Positives = 38/86 (44%), Gaps = 4/86 (4%)
Query: 253 RIVLFGTSALIPEVFTYFFKRTQYFRKNPGSLWILKLSCTVLAMGLMVPF--SFSIFPQI 310
R +L G + ++ + YF R S+W + CT+L + F SFS P
Sbjct: 46 RAILLGLAMMVCSIMMYFLLGITLLRSYMQSVWTEESQCTLLNASITETFNCSFSCGPDC 105
Query: 311 GQI-QYCSLEEKIQ-SPTEETEIFYH 334
++ QY L+ + + + E + YH
Sbjct: 106 WKLSQYPCLQVYVNLTSSGEKLLLYH 131
>gi|5031823 calcium-activated potassium channel beta 2 subunit [Homo
sapiens]
Length = 235
Score = 30.0 bits (66), Expect = 3.1
Identities = 22/86 (25%), Positives = 38/86 (44%), Gaps = 4/86 (4%)
Query: 253 RIVLFGTSALIPEVFTYFFKRTQYFRKNPGSLWILKLSCTVLAMGLMVPF--SFSIFPQI 310
R +L G + ++ + YF R S+W + CT+L + F SFS P
Sbjct: 46 RAILLGLAMMVCSIMMYFLLGITLLRSYMQSVWTEESQCTLLNASITETFNCSFSCGPDC 105
Query: 311 GQI-QYCSLEEKIQ-SPTEETEIFYH 334
++ QY L+ + + + E + YH
Sbjct: 106 WKLSQYPCLQVYVNLTSSGEKLLLYH 131
>gi|239740898 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1542
Score = 29.3 bits (64), Expect = 5.2
Identities = 33/137 (24%), Positives = 57/137 (41%), Gaps = 19/137 (13%)
Query: 198 RLLPVIFLVQASGMNVYMSRSLESIKGIAVMDKEG---NVLGHSRIAGTKAVRETLASRI 254
RL + A GM+ S + ++ GI V++ G + +G S VR T S
Sbjct: 1333 RLTASSSVTMAPGMDFTASAASHTVPGI-VLNTSGLGTSTMGASSTTSAHGVRTTTGSTR 1391
Query: 255 ------------VLFGTSAL-IPEVFTYFFKRTQYFRKNPGSLWILKLSCTVLAMGLMVP 301
V GT+ + + T K + Y + P ++ ++ L+ V A+GL V
Sbjct: 1392 EPTSSTFQETGPVSMGTNTVSMSHTPTNVIKPSGYLQ--PWAIILISLAAVVAAVGLSVG 1449
Query: 302 FSFSIFPQIGQIQYCSL 318
SF + ++YC +
Sbjct: 1450 LSFCLRDLFFPLRYCGI 1466
>gi|239754269 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1531
Score = 28.9 bits (63), Expect = 6.8
Identities = 33/137 (24%), Positives = 57/137 (41%), Gaps = 19/137 (13%)
Query: 198 RLLPVIFLVQASGMNVYMSRSLESIKGIAVMDKEG---NVLGHSRIAGTKAVRETLASRI 254
RL + A GM+ S + ++ GI V++ G + +G S VR T S
Sbjct: 1322 RLTASSSVTMAPGMDFTASAASHTVPGI-VLNTSGLGTSTMGASSTTSAHGVRTTTGSTR 1380
Query: 255 ------------VLFGTSAL-IPEVFTYFFKRTQYFRKNPGSLWILKLSCTVLAMGLMVP 301
V GT+ + + T K + Y + P ++ ++ L+ V A+GL V
Sbjct: 1381 EPTSSTFQETGPVSMGTNTVSMSHTPTNVIKPSGYLQ--PWAIILISLAAVVAAVGLSVG 1438
Query: 302 FSFSIFPQIGQIQYCSL 318
SF + ++YC +
Sbjct: 1439 LSFCLRNLFFPLRYCGI 1455
>gi|169168665 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1521
Score = 28.9 bits (63), Expect = 6.8
Identities = 33/137 (24%), Positives = 57/137 (41%), Gaps = 19/137 (13%)
Query: 198 RLLPVIFLVQASGMNVYMSRSLESIKGIAVMDKEG---NVLGHSRIAGTKAVRETLASRI 254
RL + A GM+ S + ++ GI V++ G + +G S VR T S
Sbjct: 1312 RLTASSSVTMAPGMDFTASAASHTVPGI-VLNTSGLGTSTMGASSTTSAHGVRTTTGSTR 1370
Query: 255 ------------VLFGTSAL-IPEVFTYFFKRTQYFRKNPGSLWILKLSCTVLAMGLMVP 301
V GT+ + + T K + Y + P ++ ++ L+ V A+GL V
Sbjct: 1371 EPTSSTFQETGPVSMGTNTVSMSHTPTNVIKPSGYLQ--PWAIILISLAAVVAAVGLSVG 1428
Query: 302 FSFSIFPQIGQIQYCSL 318
SF + ++YC +
Sbjct: 1429 LSFCLRNLFFPLRYCGI 1445
>gi|113417486 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1612
Score = 28.9 bits (63), Expect = 6.8
Identities = 33/137 (24%), Positives = 57/137 (41%), Gaps = 19/137 (13%)
Query: 198 RLLPVIFLVQASGMNVYMSRSLESIKGIAVMDKEG---NVLGHSRIAGTKAVRETLASRI 254
RL + A GM+ S + ++ GI V++ G + +G S VR T S
Sbjct: 1312 RLTASSSVTMAPGMDFTASAASHTVPGI-VLNTSGLGTSTMGASSTTSAHGVRTTTGSTR 1370
Query: 255 ------------VLFGTSAL-IPEVFTYFFKRTQYFRKNPGSLWILKLSCTVLAMGLMVP 301
V GT+ + + T K + Y + P ++ ++ L+ V A+GL V
Sbjct: 1371 EPTSSTFQETGPVSMGTNTVSMSHTPTNVIKPSGYLQ--PWAIILISLAAVVAAVGLSVG 1428
Query: 302 FSFSIFPQIGQIQYCSL 318
SF + ++YC +
Sbjct: 1429 LSFCLRNLFFPLRYCGI 1445
>gi|239740827 PREDICTED: hypothetical protein XP_002344067 [Homo
sapiens]
Length = 1521
Score = 28.9 bits (63), Expect = 6.8
Identities = 33/137 (24%), Positives = 57/137 (41%), Gaps = 19/137 (13%)
Query: 198 RLLPVIFLVQASGMNVYMSRSLESIKGIAVMDKEG---NVLGHSRIAGTKAVRETLASRI 254
RL + A GM+ S + ++ GI V++ G + +G S VR T S
Sbjct: 1312 RLTASSSVTMAPGMDFTASAASHTVPGI-VLNTSGLGTSTMGASSTTSAHGVRTTTGSTR 1370
Query: 255 ------------VLFGTSAL-IPEVFTYFFKRTQYFRKNPGSLWILKLSCTVLAMGLMVP 301
V GT+ + + T K + Y + P ++ ++ L+ V A+GL V
Sbjct: 1371 EPTSSTFQETGPVSMGTNTVSMSHTPTNVIKPSGYLQ--PWAIILISLAAVVAAVGLSVG 1428
Query: 302 FSFSIFPQIGQIQYCSL 318
SF + ++YC +
Sbjct: 1429 LSFCLRNLFFPLRYCGI 1445
>gi|239740777 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1612
Score = 28.9 bits (63), Expect = 6.8
Identities = 31/130 (23%), Positives = 55/130 (42%), Gaps = 19/130 (14%)
Query: 205 LVQASGMNVYMSRSLESIKGIAVMDKEG---NVLGHSRIAGTKAVRETLASRI------- 254
+ A GM+ S + ++ GI V++ G + +G S VR T S
Sbjct: 1319 VTMAPGMDFTASAASHTVPGI-VLNTSGLGTSTMGASSTTSAHGVRTTTGSTREPTSSTF 1377
Query: 255 -----VLFGTSAL-IPEVFTYFFKRTQYFRKNPGSLWILKLSCTVLAMGLMVPFSFSIFP 308
V GT+ + + T K + Y + P ++ ++ L+ V A+GL V SF +
Sbjct: 1378 QETGPVSMGTNTVSMSHTPTNVIKPSGYLQ--PWAIILISLAAVVAAVGLSVGLSFCLRD 1435
Query: 309 QIGQIQYCSL 318
++YC +
Sbjct: 1436 LFFPLRYCGI 1445
>gi|239740724 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1704
Score = 28.9 bits (63), Expect = 6.8
Identities = 31/130 (23%), Positives = 55/130 (42%), Gaps = 19/130 (14%)
Query: 205 LVQASGMNVYMSRSLESIKGIAVMDKEG---NVLGHSRIAGTKAVRETLASRI------- 254
+ A GM+ S + ++ GI V++ G + +G S VR T S
Sbjct: 1319 VTMAPGMDFTASAASHTVPGI-VLNTSGLGTSTMGASSTTSAHGVRTTTGSTREPTSSTF 1377
Query: 255 -----VLFGTSAL-IPEVFTYFFKRTQYFRKNPGSLWILKLSCTVLAMGLMVPFSFSIFP 308
V GT+ + + T K + Y + P ++ ++ L+ V A+GL V SF +
Sbjct: 1378 QETGPVSMGTNTVSMSHTPTNVIKPSGYLQ--PWAIILISLAAVVAAVGLSVGLSFCLRD 1435
Query: 309 QIGQIQYCSL 318
++YC +
Sbjct: 1436 LFFPLRYCGI 1445
>gi|239740674 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1531
Score = 28.9 bits (63), Expect = 6.8
Identities = 33/137 (24%), Positives = 57/137 (41%), Gaps = 19/137 (13%)
Query: 198 RLLPVIFLVQASGMNVYMSRSLESIKGIAVMDKEG---NVLGHSRIAGTKAVRETLASRI 254
RL + A GM+ S + ++ GI V++ G + +G S VR T S
Sbjct: 1322 RLTASSSVTMAPGMDFTASAASHTVPGI-VLNTSGLGTSTMGASSTTSAHGVRTTTGSTR 1380
Query: 255 ------------VLFGTSAL-IPEVFTYFFKRTQYFRKNPGSLWILKLSCTVLAMGLMVP 301
V GT+ + + T K + Y + P ++ ++ L+ V A+GL V
Sbjct: 1381 EPTSSTFQETGPVSMGTNTVSMSHTPTNVIKPSGYLQ--PWAIILISLAAVVAAVGLSVG 1438
Query: 302 FSFSIFPQIGQIQYCSL 318
SF + ++YC +
Sbjct: 1439 LSFCLRNLFFPLRYCGI 1455
>gi|239740645 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1531
Score = 28.9 bits (63), Expect = 6.8
Identities = 33/137 (24%), Positives = 57/137 (41%), Gaps = 19/137 (13%)
Query: 198 RLLPVIFLVQASGMNVYMSRSLESIKGIAVMDKEG---NVLGHSRIAGTKAVRETLASRI 254
RL + A GM+ S + ++ GI V++ G + +G S VR T S
Sbjct: 1322 RLTASSSVTMAPGMDFTASAASHTVPGI-VLNTSGLGTSTMGASSTTSAHGVRTTTGSTR 1380
Query: 255 ------------VLFGTSAL-IPEVFTYFFKRTQYFRKNPGSLWILKLSCTVLAMGLMVP 301
V GT+ + + T K + Y + P ++ ++ L+ V A+GL V
Sbjct: 1381 EPTSSTFQETGPVSMGTNTVSMSHTPTNVIKPSGYLQ--PWAIILISLAAVVAAVGLSVG 1438
Query: 302 FSFSIFPQIGQIQYCSL 318
SF + ++YC +
Sbjct: 1439 LSFCLRNLFFPLRYCGI 1455
>gi|239513940 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1521
Score = 28.9 bits (63), Expect = 6.8
Identities = 33/137 (24%), Positives = 57/137 (41%), Gaps = 19/137 (13%)
Query: 198 RLLPVIFLVQASGMNVYMSRSLESIKGIAVMDKEG---NVLGHSRIAGTKAVRETLASRI 254
RL + A GM+ S + ++ GI V++ G + +G S VR T S
Sbjct: 1312 RLTASSSVTMAPGMDFTASAASHTVPGI-VLNTSGLGTSTMGASSTTSAHGVRTTTGSTR 1370
Query: 255 ------------VLFGTSAL-IPEVFTYFFKRTQYFRKNPGSLWILKLSCTVLAMGLMVP 301
V GT+ + + T K + Y + P ++ ++ L+ V A+GL V
Sbjct: 1371 EPTSSTFQETGPVSMGTNTVSMSHTPTNVIKPSGYLQ--PWAIILISLAAVVAAVGLSVG 1428
Query: 302 FSFSIFPQIGQIQYCSL 318
SF + ++YC +
Sbjct: 1429 LSFCLRNLFFPLRYCGI 1445
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.323 0.137 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,930,876
Number of Sequences: 37866
Number of extensions: 465221
Number of successful extensions: 1294
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1284
Number of HSP's gapped (non-prelim): 17
length of query: 337
length of database: 18,247,518
effective HSP length: 103
effective length of query: 234
effective length of database: 14,347,320
effective search space: 3357272880
effective search space used: 3357272880
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.