Search of human proteins with 47080103

Search of human proteins with 47080103

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|47080103 solute carrier family 39 (zinc transporter), member
3 isoform b [Homo sapiens]
         (105 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|47080103 solute carrier family 39 (zinc transporter), member ...   209   5e-55
gi|32490561 solute carrier family 39 (zinc transporter), member ...   141   1e-34
gi|21361423 solute carrier family 39 (zinc transporter), member ...    41   2e-04
gi|221219050 transducin-like enhancer protein 2 isoform 3 [Homo ...    28   1.5  
gi|221219048 transducin-like enhancer protein 2 isoform 2 [Homo ...    28   1.5  
gi|21361151 transducin-like enhancer protein 2 isoform 1 [Homo s...    28   1.5  
gi|13994255 alanine-glyoxylate aminotransferase 2 precursor [Hom...    27   4.5  
gi|21553315 phosphatidylinositol glycan anchor biosynthesis, cla...    26   7.7  
gi|30410020 progestin and adipoQ receptor family member VII [Hom...    26   7.7  
gi|21361959 solute carrier family 35, member F5 [Homo sapiens]         26   7.7  

>gi|47080103 solute carrier family 39 (zinc transporter), member 3
           isoform b [Homo sapiens]
          Length = 105

 Score =  209 bits (531), Expect = 5e-55
 Identities = 105/105 (100%), Positives = 105/105 (100%)

Query: 1   MVKLLVAKILCMVGVFFFMLLGSLLPVKIIETDFEKAHRSKKILSLCNTFGGGVFLATCF 60
           MVKLLVAKILCMVGVFFFMLLGSLLPVKIIETDFEKAHRSKKILSLCNTFGGGVFLATCF
Sbjct: 1   MVKLLVAKILCMVGVFFFMLLGSLLPVKIIETDFEKAHRSKKILSLCNTFGGGVFLATCF 60

Query: 61  NALLPAVREKVRAPWALAAALGTLWPRDSDAFSTLMPSSVKALML 105
           NALLPAVREKVRAPWALAAALGTLWPRDSDAFSTLMPSSVKALML
Sbjct: 61  NALLPAVREKVRAPWALAAALGTLWPRDSDAFSTLMPSSVKALML 105


>gi|32490561 solute carrier family 39 (zinc transporter), member 3
          isoform a [Homo sapiens]
          Length = 314

 Score =  141 bits (355), Expect = 1e-34
 Identities = 70/72 (97%), Positives = 72/72 (100%)

Query: 1  MVKLLVAKILCMVGVFFFMLLGSLLPVKIIETDFEKAHRSKKILSLCNTFGGGVFLATCF 60
          MVKLLVAKILCMVGVFFFMLLGSLLPVKIIETDFEKAHRSKKILSLCNTFGGGVFLATCF
Sbjct: 1  MVKLLVAKILCMVGVFFFMLLGSLLPVKIIETDFEKAHRSKKILSLCNTFGGGVFLATCF 60

Query: 61 NALLPAVREKVR 72
          NALLPAVREK++
Sbjct: 61 NALLPAVREKLQ 72


>gi|21361423 solute carrier family 39 (zinc transporter), member 1
          [Homo sapiens]
          Length = 324

 Score = 40.8 bits (94), Expect = 2e-04
 Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 3/64 (4%)

Query: 5  LVAKILCMVGVFFFMLLGSLLPVKIIE---TDFEKAHRSKKILSLCNTFGGGVFLATCFN 61
          L  K+  +V +    LL SL+P+ ++     + E +   +K LSL + F GGVFLATC  
Sbjct: 27 LEVKLGALVLLLVLTLLCSLVPICVLRRPGANHEGSASRQKALSLVSCFAGGVFLATCLL 86

Query: 62 ALLP 65
           LLP
Sbjct: 87 DLLP 90


>gi|221219050 transducin-like enhancer protein 2 isoform 3 [Homo
           sapiens]
          Length = 621

 Score = 28.1 bits (61), Expect = 1.5
 Identities = 14/39 (35%), Positives = 24/39 (61%)

Query: 64  LPAVREKVRAPWALAAALGTLWPRDSDAFSTLMPSSVKA 102
           +PA R+ V +P +LA++LG+  PR  +     +P+S  A
Sbjct: 140 IPARRDLVDSPASLASSLGSPLPRAKELILNDLPASTPA 178


>gi|221219048 transducin-like enhancer protein 2 isoform 2 [Homo
           sapiens]
          Length = 706

 Score = 28.1 bits (61), Expect = 1.5
 Identities = 14/39 (35%), Positives = 24/39 (61%)

Query: 64  LPAVREKVRAPWALAAALGTLWPRDSDAFSTLMPSSVKA 102
           +PA R+ V +P +LA++LG+  PR  +     +P+S  A
Sbjct: 276 IPARRDLVDSPASLASSLGSPLPRAKELILNDLPASTPA 314


>gi|21361151 transducin-like enhancer protein 2 isoform 1 [Homo
           sapiens]
          Length = 743

 Score = 28.1 bits (61), Expect = 1.5
 Identities = 14/39 (35%), Positives = 24/39 (61%)

Query: 64  LPAVREKVRAPWALAAALGTLWPRDSDAFSTLMPSSVKA 102
           +PA R+ V +P +LA++LG+  PR  +     +P+S  A
Sbjct: 262 IPARRDLVDSPASLASSLGSPLPRAKELILNDLPASTPA 300


>gi|13994255 alanine-glyoxylate aminotransferase 2 precursor [Homo
           sapiens]
          Length = 514

 Score = 26.6 bits (57), Expect = 4.5
 Identities = 15/50 (30%), Positives = 24/50 (48%)

Query: 21  LGSLLPVKIIETDFEKAHRSKKILSLCNTFGGGVFLATCFNALLPAVREK 70
           +G+  P+  + T  E A    K L   NTFGG        +A+L  ++E+
Sbjct: 352 IGNGFPMAAVITTPEIAKSLAKCLQHFNTFGGNPMACAIGSAVLEVIKEE 401


>gi|21553315 phosphatidylinositol glycan anchor biosynthesis, class
           M [Homo sapiens]
          Length = 423

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 12/23 (52%), Positives = 12/23 (52%)

Query: 63  LLPAVREKVRAPWALAAALGTLW 85
           LLP V   VR PW  A  L  LW
Sbjct: 342 LLPLVMPLVRMPWKRAVVLLMLW 364


>gi|30410020 progestin and adipoQ receptor family member VII [Homo
           sapiens]
          Length = 346

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 21/65 (32%), Positives = 27/65 (41%), Gaps = 6/65 (9%)

Query: 47  CNTFGGG-----VFLATCFNALLPAVREKVRAPWALAAALGTLWPRD-SDAFSTLMPSSV 100
           C+ FG G     +FL  C  A L AV     A   +   L T WP + S  F   + SS+
Sbjct: 268 CHVFGQGHQLFHIFLVLCTLAQLEAVALDYEARRPIYEPLHTHWPHNFSGLFLLTVGSSI 327

Query: 101 KALML 105
               L
Sbjct: 328 LTAFL 332


>gi|21361959 solute carrier family 35, member F5 [Homo sapiens]
          Length = 523

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 6/79 (7%)

Query: 3   KLLVAKILCMVGVFFFMLLGSLLPVKIIETDFEKAHRSKKILSLCNTFGGGVFLATCFNA 62
           ++ +  IL      F ++L ++ P    +  F  +     ILS+     GGV L     +
Sbjct: 266 QVAIVNILSSTSGLFTLILAAVFPSNSGDR-FTLSKLLAVILSI-----GGVVLVNLAGS 319

Query: 63  LLPAVREKVRAPWALAAAL 81
             PA R+ V + W+LA A+
Sbjct: 320 EKPAGRDTVGSIWSLAGAM 338


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.330    0.140    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,392,571
Number of Sequences: 37866
Number of extensions: 121995
Number of successful extensions: 338
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 330
Number of HSP's gapped (non-prelim): 10
length of query: 105
length of database: 18,247,518
effective HSP length: 76
effective length of query: 29
effective length of database: 15,369,702
effective search space: 445721358
effective search space used: 445721358
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.