Search of human proteins with 4557847

Search of human proteins with 4557847

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|4557847 gamma sarcoglycan [Homo sapiens]
         (291 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|4557847 gamma sarcoglycan [Homo sapiens]                           587   e-168
gi|94721265 sarcoglycan zeta [Homo sapiens]                           339   2e-93
gi|189571662 delta-sarcoglycan isoform 3 [Homo sapiens]               306   1e-83
gi|21314619 delta-sarcoglycan isoform 1 [Homo sapiens]                306   1e-83
gi|27477101 delta-sarcoglycan isoform 2 [Homo sapiens]                248   3e-66
gi|4506913 sarcoglycan, beta [Homo sapiens]                            54   2e-07
gi|19718731 bromodomain-containing protein 4 isoform long [Homo ...    34   0.13 
gi|31377607 mitochondrial fission factor [Homo sapiens]                34   0.13 
gi|42794265 MAS-related GPR, member D [Homo sapiens]                   31   1.5  
gi|71774197 ubiquitin specific protease 47 [Homo sapiens]              30   2.5  
gi|226958663 nucleoporin 210kDa-like isoform 2 [Homo sapiens]          28   7.3  
gi|117414168 nucleoporin 210kDa-like isoform 1 [Homo sapiens]          28   7.3  
gi|5174607 NGFI-A binding protein 2 [Homo sapiens]                     28   7.3  
gi|23397479 zinc finger protein 524 [Homo sapiens]                     28   7.3  
gi|113722120 G protein-coupled receptor 98 precursor [Homo sapiens]    28   9.5  

>gi|4557847 gamma sarcoglycan [Homo sapiens]
          Length = 291

 Score =  587 bits (1514), Expect = e-168
 Identities = 291/291 (100%), Positives = 291/291 (100%)

Query: 1   MVREQYTTATEGICIERPENQYVYKIGIYGWRKRCLYLFVLLLLIILVVNLALTIWILKV 60
           MVREQYTTATEGICIERPENQYVYKIGIYGWRKRCLYLFVLLLLIILVVNLALTIWILKV
Sbjct: 1   MVREQYTTATEGICIERPENQYVYKIGIYGWRKRCLYLFVLLLLIILVVNLALTIWILKV 60

Query: 61  MWFSPAGMGHLCVTKDGLRLEGESEFLFPLYAKEIHSRVDSSLLLQSTQNVTVNARNSEG 120
           MWFSPAGMGHLCVTKDGLRLEGESEFLFPLYAKEIHSRVDSSLLLQSTQNVTVNARNSEG
Sbjct: 61  MWFSPAGMGHLCVTKDGLRLEGESEFLFPLYAKEIHSRVDSSLLLQSTQNVTVNARNSEG 120

Query: 121 EVTGRLKVGPKMVEVQNQQFQINSNDGKPLFTVDEKEVVVGTDKLRVTGPEGALFEHSVE 180
           EVTGRLKVGPKMVEVQNQQFQINSNDGKPLFTVDEKEVVVGTDKLRVTGPEGALFEHSVE
Sbjct: 121 EVTGRLKVGPKMVEVQNQQFQINSNDGKPLFTVDEKEVVVGTDKLRVTGPEGALFEHSVE 180

Query: 181 TPLVRADPFQDLRLESPTRSLSMDAPRGVHIQAHAGKIEALSQMDILFHSSDGMLVLDAE 240
           TPLVRADPFQDLRLESPTRSLSMDAPRGVHIQAHAGKIEALSQMDILFHSSDGMLVLDAE
Sbjct: 181 TPLVRADPFQDLRLESPTRSLSMDAPRGVHIQAHAGKIEALSQMDILFHSSDGMLVLDAE 240

Query: 241 TVCLPKLVQGTWGPSGSSQSLYEICVCPDGKLYLSVAGVSTTCQEHSHICL 291
           TVCLPKLVQGTWGPSGSSQSLYEICVCPDGKLYLSVAGVSTTCQEHSHICL
Sbjct: 241 TVCLPKLVQGTWGPSGSSQSLYEICVCPDGKLYLSVAGVSTTCQEHSHICL 291


>gi|94721265 sarcoglycan zeta [Homo sapiens]
          Length = 312

 Score =  339 bits (869), Expect = 2e-93
 Identities = 174/297 (58%), Positives = 223/297 (75%), Gaps = 6/297 (2%)

Query: 1   MVREQYTTATEGICIERPENQYVYKIGIYGWRKRCLYLFVLLLLIILVVNLALTIWILKV 60
           M REQY  AT+   + R EN  +Y +GIYGWRKRCLY FVLLLL+ ++VNLA+TIWILKV
Sbjct: 14  MTREQYILATQQNNLPRTENAQLYPVGIYGWRKRCLYFFVLLLLVTMIVNLAMTIWILKV 73

Query: 61  MWFSPAGMGHLCVTKDGLRLEGESEFLFPLYAKEIHSRVDSSLLLQSTQNVTVNARNSEG 120
           M F+  GMG+L VTK G+RLEG SEFL PLY KEIHSR DS L+LQS +NVTVNARN  G
Sbjct: 74  MNFTVDGMGNLRVTKKGIRLEGISEFLLPLYVKEIHSRKDSPLVLQSDRNVTVNARNHMG 133

Query: 121 EVTGRLKVGPKMVEVQNQQFQIN-SNDGKPLFTVDEKEVVVGTDKLRVTGPEGALFEHSV 179
           ++TG+L +G   VE Q ++F++  S DG+ LF+ DE E+ +G +KL+VTG EGA+F HSV
Sbjct: 134 QLTGQLTIGADAVEAQCKRFEVRASEDGRVLFSADEDEITIGAEKLKVTGTEGAVFGHSV 193

Query: 180 ETPLVRADPFQDLRLESPTRSLSMDAPRGVHIQAHAGKIEALSQMDILFHSSDGMLVLDA 239
           ETP +RA+P QDLRLESPTRSL M+APRGV + A AG  +A  + ++   S++G + L+A
Sbjct: 194 ETPHIRAEPSQDLRLESPTRSLIMEAPRGVQVSAAAGDFKATCRKELHLQSTEGEIFLNA 253

Query: 240 ETVCLPKLVQGTW---GPSGSS--QSLYEICVCPDGKLYLSVAGVSTTCQEHSHICL 291
           ET+ L  L  G++    PS SS  Q++YE+CVCP+GKLYLS AGV +TCQ  S+ICL
Sbjct: 254 ETIKLGNLPTGSFSSSSPSSSSSRQTVYELCVCPNGKLYLSPAGVGSTCQSSSNICL 310


>gi|189571662 delta-sarcoglycan isoform 3 [Homo sapiens]
          Length = 289

 Score =  306 bits (785), Expect = 1e-83
 Identities = 149/269 (55%), Positives = 202/269 (75%)

Query: 23  VYKIGIYGWRKRCLYLFVLLLLIILVVNLALTIWILKVMWFSPAGMGHLCVTKDGLRLEG 82
           VYK+GIYGWRKRCLY FVLLL+I+++VNLA+TIWILKVM F+  GMG+L +T+ GL+LEG
Sbjct: 21  VYKVGIYGWRKRCLYFFVLLLMILILVNLAMTIWILKVMNFTIDGMGNLRITEKGLKLEG 80

Query: 83  ESEFLFPLYAKEIHSRVDSSLLLQSTQNVTVNARNSEGEVTGRLKVGPKMVEVQNQQFQI 142
           +SEFL PLYAKEI SR  ++L  +S +NVTVN  N + +V  +L  GPK VE   ++F++
Sbjct: 81  DSEFLQPLYAKEIQSRPGNALYFKSARNVTVNILNDQTKVLTQLITGPKAVEAYGKKFEV 140

Query: 143 NSNDGKPLFTVDEKEVVVGTDKLRVTGPEGALFEHSVETPLVRADPFQDLRLESPTRSLS 202
            +  GK LF+ D  EVVVG ++LRV G EG +F  S+ETP VRADPF++LRLESPTRSL 
Sbjct: 141 KTVSGKLLFSADNNEVVVGAERLRVLGAEGTVFPKSIETPNVRADPFKELRLESPTRSLV 200

Query: 203 MDAPRGVHIQAHAGKIEALSQMDILFHSSDGMLVLDAETVCLPKLVQGTWGPSGSSQSLY 262
           M+AP+GV I A AG +EA  + ++   S DG + LDA  + LP+L  G++ P+G+ Q ++
Sbjct: 201 MEAPKGVEINAEAGNMEATCRTELRLESKDGEIKLDAAKIRLPRLPHGSYTPTGTRQKVF 260

Query: 263 EICVCPDGKLYLSVAGVSTTCQEHSHICL 291
           EICVC +G+L+LS AG  +TCQ ++ +CL
Sbjct: 261 EICVCANGRLFLSQAGAGSTCQINTSVCL 289


>gi|21314619 delta-sarcoglycan isoform 1 [Homo sapiens]
          Length = 290

 Score =  306 bits (785), Expect = 1e-83
 Identities = 149/269 (55%), Positives = 202/269 (75%)

Query: 23  VYKIGIYGWRKRCLYLFVLLLLIILVVNLALTIWILKVMWFSPAGMGHLCVTKDGLRLEG 82
           VYK+GIYGWRKRCLY FVLLL+I+++VNLA+TIWILKVM F+  GMG+L +T+ GL+LEG
Sbjct: 22  VYKVGIYGWRKRCLYFFVLLLMILILVNLAMTIWILKVMNFTIDGMGNLRITEKGLKLEG 81

Query: 83  ESEFLFPLYAKEIHSRVDSSLLLQSTQNVTVNARNSEGEVTGRLKVGPKMVEVQNQQFQI 142
           +SEFL PLYAKEI SR  ++L  +S +NVTVN  N + +V  +L  GPK VE   ++F++
Sbjct: 82  DSEFLQPLYAKEIQSRPGNALYFKSARNVTVNILNDQTKVLTQLITGPKAVEAYGKKFEV 141

Query: 143 NSNDGKPLFTVDEKEVVVGTDKLRVTGPEGALFEHSVETPLVRADPFQDLRLESPTRSLS 202
            +  GK LF+ D  EVVVG ++LRV G EG +F  S+ETP VRADPF++LRLESPTRSL 
Sbjct: 142 KTVSGKLLFSADNNEVVVGAERLRVLGAEGTVFPKSIETPNVRADPFKELRLESPTRSLV 201

Query: 203 MDAPRGVHIQAHAGKIEALSQMDILFHSSDGMLVLDAETVCLPKLVQGTWGPSGSSQSLY 262
           M+AP+GV I A AG +EA  + ++   S DG + LDA  + LP+L  G++ P+G+ Q ++
Sbjct: 202 MEAPKGVEINAEAGNMEATCRTELRLESKDGEIKLDAAKIRLPRLPHGSYTPTGTRQKVF 261

Query: 263 EICVCPDGKLYLSVAGVSTTCQEHSHICL 291
           EICVC +G+L+LS AG  +TCQ ++ +CL
Sbjct: 262 EICVCANGRLFLSQAGAGSTCQINTSVCL 290


>gi|27477101 delta-sarcoglycan isoform 2 [Homo sapiens]
          Length = 256

 Score =  248 bits (634), Expect = 3e-66
 Identities = 123/211 (58%), Positives = 160/211 (75%)

Query: 23  VYKIGIYGWRKRCLYLFVLLLLIILVVNLALTIWILKVMWFSPAGMGHLCVTKDGLRLEG 82
           VYK+GIYGWRKRCLY FVLLL+I+++VNLA+TIWILKVM F+  GMG+L +T+ GL+LEG
Sbjct: 22  VYKVGIYGWRKRCLYFFVLLLMILILVNLAMTIWILKVMNFTIDGMGNLRITEKGLKLEG 81

Query: 83  ESEFLFPLYAKEIHSRVDSSLLLQSTQNVTVNARNSEGEVTGRLKVGPKMVEVQNQQFQI 142
           +SEFL PLYAKEI SR  ++L  +S +NVTVN  N + +V  +L  GPK VE   ++F++
Sbjct: 82  DSEFLQPLYAKEIQSRPGNALYFKSARNVTVNILNDQTKVLTQLITGPKAVEAYGKKFEV 141

Query: 143 NSNDGKPLFTVDEKEVVVGTDKLRVTGPEGALFEHSVETPLVRADPFQDLRLESPTRSLS 202
            +  GK LF+ D  EVVVG ++LRV G EG +F  S+ETP VRADPF++LRLESPTRSL 
Sbjct: 142 KTVSGKLLFSADNNEVVVGAERLRVLGAEGTVFPKSIETPNVRADPFKELRLESPTRSLV 201

Query: 203 MDAPRGVHIQAHAGKIEALSQMDILFHSSDG 233
           M+AP+GV I A AG +EA  + ++   S DG
Sbjct: 202 MEAPKGVEINAEAGNMEATCRTELRLESKDG 232


>gi|4506913 sarcoglycan, beta [Homo sapiens]
          Length = 318

 Score = 53.9 bits (128), Expect = 2e-07
 Identities = 61/282 (21%), Positives = 114/282 (40%), Gaps = 33/282 (11%)

Query: 23  VYKIGIYGWRKRCLYLFVLLLLIILVVNLALTIWILKVMWFSPAGMGHLCVTKDG-LRLE 81
           ++K G+ G +       ++LL I+ V+NL +T+ I  V+   P G   +   + G LR +
Sbjct: 52  LHKTGLRGRKGNLAICVIILLFILAVINLIITLVIWAVIRIGPNGCDSMEFHESGLLRFK 111

Query: 82  GESEF--LFPLYAKEIHSRVDSSLLLQSTQNVTVNARNSEGEVTGRLKVGPKMVEVQNQQ 139
             S+   + PLY   +  R + +L++       V             + G   + V+N +
Sbjct: 112 QVSDMGVIHPLYKSTVGGRRNENLVITGNNQPIV------------FQQGTTKLSVENNK 159

Query: 140 FQINSNDGKPLFTVDEKEVVVGTD----KLRVTGPEGALFEHSVETPLVRADPFQDLRLE 195
             I S+ G   F    + ++  TD    +  +     +L      T  + ++   DL ++
Sbjct: 160 TSITSDIGMQFFDPRTQNILFSTDYETHEFHLPSGVKSLNVQKASTERITSNATSDLNIK 219

Query: 196 SPTRSLSMDAPRGVHIQAH------AGKIEALSQMDILFHSSDGMLVLDAETVCLPKLVQ 249
              R++ +    GV I          G +E  ++  I+ + S     +   T  LP    
Sbjct: 220 VDGRAI-VRGNEGVFIMGKTIEFHMGGNMELKAENSIILNGS-----VMVSTTRLPSSSS 273

Query: 250 GTWGPSGSSQSLYEICVCPDGKLY-LSVAGVSTTCQEHSHIC 290
           G    SG     Y++C+C DG L+ + V   +  CQ   + C
Sbjct: 274 GDQLGSG-DWVRYKLCMCADGTLFKVQVTSQNMGCQISDNPC 314


>gi|19718731 bromodomain-containing protein 4 isoform long [Homo
            sapiens]
          Length = 1362

 Score = 34.3 bits (77), Expect = 0.13
 Identities = 26/93 (27%), Positives = 43/93 (46%), Gaps = 6/93 (6%)

Query: 123  TGRLKVGPKMVEV---QNQQFQINSNDGKPLFTVDEKEVVVGTDKLRVTGPEGALFEHSV 179
            TG L+  P  + +   Q  QFQ  ++   P   V  K+  +    +    P   + E  +
Sbjct: 1056 TGHLREAPSPLMIHSPQMSQFQSLTHQSPPQQNVQPKKQELRAASVVQPQPLVVVKEEKI 1115

Query: 180  ETPLVRADPFQ-DLRLESPTRSLSMDAPRGVHI 211
             +P++R++PF   LR E P    S+ AP  VH+
Sbjct: 1116 HSPIIRSEPFSPSLRPEPPKHPESIKAP--VHL 1146


>gi|31377607 mitochondrial fission factor [Homo sapiens]
          Length = 342

 Score = 34.3 bits (77), Expect = 0.13
 Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 8/82 (9%)

Query: 122 VTGRLKVGPKMVEVQNQQFQINSNDGKPLFTVDEKEVVVGTDKLRVTGPEGALFEHSVET 181
           V  +LKV P   +++ Q FQ    +   +  V E+ VV G +       E   F    + 
Sbjct: 49  VPEKLKVAPPNADLE-QGFQEGVPNASVIMQVPERIVVAGNN-------EDVSFSRPADL 100

Query: 182 PLVRADPFQDLRLESPTRSLSM 203
            L+++ PF+ L L++P R L++
Sbjct: 101 DLIQSTPFKPLALKTPPRVLTL 122


>gi|42794265 MAS-related GPR, member D [Homo sapiens]
          Length = 321

 Score = 30.8 bits (68), Expect = 1.5
 Identities = 29/98 (29%), Positives = 44/98 (44%), Gaps = 5/98 (5%)

Query: 31  WRKRCLYLFVLLL---LIILVVNLALTIWILKVMWFS-PAGMGHLCVTKDGLRLEGESEF 86
           WR++   LFV++L   L+ L+ +L L+I+   + W S P  M  LC +   L     S  
Sbjct: 212 WRRQPTRLFVVVLASVLVFLICSLPLSIYWFVLYWLSLPPEMQVLCFSLSRLS-SSVSSS 270

Query: 87  LFPLYAKEIHSRVDSSLLLQSTQNVTVNARNSEGEVTG 124
             P+    + SR    L  +S   V   A   E E+ G
Sbjct: 271 ANPVIYFLVGSRRSHRLPTRSLGTVLQQALREEPELEG 308


>gi|71774197 ubiquitin specific protease 47 [Homo sapiens]
          Length = 1287

 Score = 30.0 bits (66), Expect = 2.5
 Identities = 26/114 (22%), Positives = 52/114 (45%), Gaps = 12/114 (10%)

Query: 157  EVVVGTDKLRVTGPEGALFEHSVETPLVRADPFQDLRLESPTRSLSMDAPRGVHIQAHAG 216
            EV+ G +K++    + A+     +   ++ DPFQ++ LES     S+D      ++    
Sbjct: 1123 EVLDGVEKMKSMS-QLAVLSRRWKPSEMKLDPFQEVVLESS----SVD-----ELREKLS 1172

Query: 217  KIEALSQMDILFHSSDGMLVLDAETVCLPKLVQGTWGPSGSSQSLYEICVCPDG 270
            +I  +   DI F    G    D   + + + +   W P  S+ +++ + +C DG
Sbjct: 1173 EISGIPLDDIEFAKGRGTFPCDISVLDIHQDLD--WNPKVSTLNVWPLYICDDG 1224


>gi|226958663 nucleoporin 210kDa-like isoform 2 [Homo sapiens]
          Length = 1736

 Score = 28.5 bits (62), Expect = 7.3
 Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 7/86 (8%)

Query: 79   RLEGESEFLFPLYAKEIHSR---VDSSLLLQSTQNVTVNARNSEGEVTGRLKVGPKMVEV 135
            RL  E   L P+   ++ S       S++  S  N TV   N  G+VTG++ VG  +V  
Sbjct: 1086 RLLPEKMTLIPMNMMQVMSEGGPQPQSIVHFSISNQTVAVVNRRGQVTGKI-VGTAVVHG 1144

Query: 136  QNQQFQINSNDGKPL-FTVDEKEVVV 160
              Q   +N + GK + F+ DE ++ V
Sbjct: 1145 TIQ--TVNEDTGKVIVFSQDEVQIEV 1168


>gi|117414168 nucleoporin 210kDa-like isoform 1 [Homo sapiens]
          Length = 1888

 Score = 28.5 bits (62), Expect = 7.3
 Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 7/86 (8%)

Query: 79   RLEGESEFLFPLYAKEIHSR---VDSSLLLQSTQNVTVNARNSEGEVTGRLKVGPKMVEV 135
            RL  E   L P+   ++ S       S++  S  N TV   N  G+VTG++ VG  +V  
Sbjct: 1086 RLLPEKMTLIPMNMMQVMSEGGPQPQSIVHFSISNQTVAVVNRRGQVTGKI-VGTAVVHG 1144

Query: 136  QNQQFQINSNDGKPL-FTVDEKEVVV 160
              Q   +N + GK + F+ DE ++ V
Sbjct: 1145 TIQ--TVNEDTGKVIVFSQDEVQIEV 1168


>gi|5174607 NGFI-A binding protein 2 [Homo sapiens]
          Length = 525

 Score = 28.5 bits (62), Expect = 7.3
 Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 1/65 (1%)

Query: 116 RNSEGEVTGRLKVGPKMVEVQNQQFQINSNDGKPLFTVDEKEVVVGT-DKLRVTGPEGAL 174
           R   GEVT  LK+  K+       F+++ ND +    + +  ++ G  D  R  G + +L
Sbjct: 258 RGDAGEVTSLLKLNKKLARSVGHIFEMDDNDSQKEEEIRKYSIIYGRFDSKRREGKQLSL 317

Query: 175 FEHSV 179
            E ++
Sbjct: 318 HELTI 322


>gi|23397479 zinc finger protein 524 [Homo sapiens]
          Length = 264

 Score = 28.5 bits (62), Expect = 7.3
 Identities = 13/44 (29%), Positives = 22/44 (50%)

Query: 130 PKMVEVQNQQFQINSNDGKPLFTVDEKEVVVGTDKLRVTGPEGA 173
           P +V+VQ     + S+ G  L  +D++ V     +    GPEG+
Sbjct: 64  PPLVQVQGVTAPVGSSGGSDLLLIDDQGVPYTVSEGSAAGPEGS 107


>gi|113722120 G protein-coupled receptor 98 precursor [Homo sapiens]
          Length = 6306

 Score = 28.1 bits (61), Expect = 9.5
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)

Query: 66   AGMGHLCVTKDGLRLEGESEFLFPLYA-KEIHSRVDSSLLLQSTQNVTVNAR 116
            AG  +   + D + LEGE+    P+Y   +I+  ++ S L+Q     T  AR
Sbjct: 2163 AGEDYSIASSDVVLLEGETSKAVPIYVINDIYPELEESFLVQLMNETTGGAR 2214


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.320    0.137    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,982,432
Number of Sequences: 37866
Number of extensions: 471936
Number of successful extensions: 1195
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1180
Number of HSP's gapped (non-prelim): 19
length of query: 291
length of database: 18,247,518
effective HSP length: 101
effective length of query: 190
effective length of database: 14,423,052
effective search space: 2740379880
effective search space used: 2740379880
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.