Search of human proteins with 13236557

Search of human proteins with 13236557

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|13236557 chromosome 7 open reading frame 23 [Homo sapiens]
         (118 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|13236557 chromosome 7 open reading frame 23 [Homo sapiens]         239   3e-64
gi|161484640 neuromedin B receptor [Homo sapiens]                      31   0.24 
gi|183227675 transmembrane protein 72 [Homo sapiens]                   30   0.31 
gi|108773799 ganglioside-induced differentiation-associated prot...    30   0.53 
gi|108773797 ganglioside-induced differentiation-associated prot...    30   0.53 
gi|239753878 PREDICTED: hypothetical protein XP_002345809, parti...    28   1.2  
gi|29337286 eukaryotic translation initiation factor 2C, 3 isofo...    28   1.5  
gi|29294647 eukaryotic translation initiation factor 2C, 3 isofo...    28   1.5  
gi|22748751 solute carrier family 43, member 2 [Homo sapiens]          28   1.5  
gi|9506663 ring finger protein 186 [Homo sapiens]                      27   2.6  
gi|5921992 adenosine A2a receptor [Homo sapiens]                       27   4.5  
gi|239582720 ATG9 autophagy related 9 homolog B [Homo sapiens]         27   4.5  
gi|74271832 G protein-coupled receptor 155 isoform 9 [Homo sapiens]    27   4.5  
gi|74271834 G protein-coupled receptor 155 isoform 10 [Homo sapi...    27   4.5  
gi|7706769 chemokine (C-C motif) receptor-like 1 [Homo sapiens]        26   5.9  
gi|30795217 chemokine (C-C motif) receptor-like 1 [Homo sapiens]       26   5.9  
gi|51921381 olfactory receptor, family 2, subfamily T, member 2 ...    26   7.7  

>gi|13236557 chromosome 7 open reading frame 23 [Homo sapiens]
          Length = 118

 Score =  239 bits (611), Expect = 3e-64
 Identities = 118/118 (100%), Positives = 118/118 (100%)

Query: 1   MEDFATRTYGTSGLDNRPLFGETSAKDRIINLVVGSLTSLLILVTLISAFVFPQLPPKPL 60
           MEDFATRTYGTSGLDNRPLFGETSAKDRIINLVVGSLTSLLILVTLISAFVFPQLPPKPL
Sbjct: 1   MEDFATRTYGTSGLDNRPLFGETSAKDRIINLVVGSLTSLLILVTLISAFVFPQLPPKPL 60

Query: 61  NIFFAVCISLSSITACILIYWYRQGDLEPKFRKLIYYIIFSIIMLCICANLYFHDVGR 118
           NIFFAVCISLSSITACILIYWYRQGDLEPKFRKLIYYIIFSIIMLCICANLYFHDVGR
Sbjct: 61  NIFFAVCISLSSITACILIYWYRQGDLEPKFRKLIYYIIFSIIMLCICANLYFHDVGR 118


>gi|161484640 neuromedin B receptor [Homo sapiens]
          Length = 390

 Score = 30.8 bits (68), Expect = 0.24
 Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 4/45 (8%)

Query: 71  SSITACILIYWYRQGD-LEPKFRKLIYYIIFSIIMLCICANLYFH 114
           SS TACI    Y Q D L PK   ++ ++++ +I L I +  Y+H
Sbjct: 193 SSFTACIP---YPQTDELHPKIHSVLIFLVYFLIPLAIISIYYYH 234


>gi|183227675 transmembrane protein 72 [Homo sapiens]
          Length = 275

 Score = 30.4 bits (67), Expect = 0.31
 Identities = 15/47 (31%), Positives = 25/47 (53%)

Query: 67  CISLSSITACILIYWYRQGDLEPKFRKLIYYIIFSIIMLCICANLYF 113
           C  L   TA +LI    +  L+ +F+ L +Y++F+   + IC   YF
Sbjct: 14  CRLLGITTAAVLIGVGTETFLQGQFKSLAFYLLFTGAAVSICEGAYF 60


>gi|108773799 ganglioside-induced differentiation-associated protein
           1 isoform b [Homo sapiens]
          Length = 290

 Score = 29.6 bits (65), Expect = 0.53
 Identities = 24/90 (26%), Positives = 38/90 (42%), Gaps = 1/90 (1%)

Query: 4   FATRTYGTSGLDNRPLFGETSAKDRIINLVVGSLTSLLILVTLISAF-VFPQLPPKPLNI 62
           FA R +G     N   + E   K +  N V+G + ++LI   L +AF V  +  PK L  
Sbjct: 195 FARRNWGNGKRPNLETYYERVLKRKTFNKVLGHVNNILISAVLPTAFRVAKKRAPKVLGT 254

Query: 63  FFAVCISLSSITACILIYWYRQGDLEPKFR 92
              V +         +++  R G +   FR
Sbjct: 255 TLVVGLLAGVGYFAFMLFRKRLGSMILAFR 284


>gi|108773797 ganglioside-induced differentiation-associated protein
           1 isoform a [Homo sapiens]
          Length = 358

 Score = 29.6 bits (65), Expect = 0.53
 Identities = 24/90 (26%), Positives = 38/90 (42%), Gaps = 1/90 (1%)

Query: 4   FATRTYGTSGLDNRPLFGETSAKDRIINLVVGSLTSLLILVTLISAF-VFPQLPPKPLNI 62
           FA R +G     N   + E   K +  N V+G + ++LI   L +AF V  +  PK L  
Sbjct: 263 FARRNWGNGKRPNLETYYERVLKRKTFNKVLGHVNNILISAVLPTAFRVAKKRAPKVLGT 322

Query: 63  FFAVCISLSSITACILIYWYRQGDLEPKFR 92
              V +         +++  R G +   FR
Sbjct: 323 TLVVGLLAGVGYFAFMLFRKRLGSMILAFR 352


>gi|239753878 PREDICTED: hypothetical protein XP_002345809, partial
           [Homo sapiens]
          Length = 218

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 7/56 (12%)

Query: 61  NIFFAVCISLSSITACILIYWYRQGDLEPKFRKLIYYIIFSIIMLCICANLYFHDV 116
           +++  +C+ +  I  CI +Y Y            +Y  I++ I +CI   +Y H+V
Sbjct: 86  HMYVYICVYILYICMCIYVYIYYT-------YVCVYMCIYTHICMCIYVYIYTHNV 134


>gi|29337286 eukaryotic translation initiation factor 2C, 3 isoform
           b [Homo sapiens]
          Length = 626

 Score = 28.1 bits (61), Expect = 1.5
 Identities = 12/29 (41%), Positives = 19/29 (65%)

Query: 79  IYWYRQGDLEPKFRKLIYYIIFSIIMLCI 107
           I +YR G  E +FR+++YY + +I   CI
Sbjct: 431 IIFYRDGVSEGQFRQVLYYELLAIREACI 459


>gi|29294647 eukaryotic translation initiation factor 2C, 3 isoform
           a [Homo sapiens]
          Length = 860

 Score = 28.1 bits (61), Expect = 1.5
 Identities = 12/29 (41%), Positives = 19/29 (65%)

Query: 79  IYWYRQGDLEPKFRKLIYYIIFSIIMLCI 107
           I +YR G  E +FR+++YY + +I   CI
Sbjct: 665 IIFYRDGVSEGQFRQVLYYELLAIREACI 693


>gi|22748751 solute carrier family 43, member 2 [Homo sapiens]
          Length = 569

 Score = 28.1 bits (61), Expect = 1.5
 Identities = 19/78 (24%), Positives = 38/78 (48%), Gaps = 7/78 (8%)

Query: 25  AKDRIINLVVGSLTSLLILVTLISAFVFPQLPPKPLNIFFAVCISLSSITACILIYWYRQ 84
           A+D ++NL     + LL  +TL    V  +  P+ L +  + C ++S    C+LI +   
Sbjct: 83  AQDEMLNLAFTVGSFLLSAITLPLGIVMDKYGPRKLRLLGSACFAVS----CLLIAY--- 135

Query: 85  GDLEPKFRKLIYYIIFSI 102
           G  +P    ++ +I  ++
Sbjct: 136 GASKPNALSVLIFIALAL 153


>gi|9506663 ring finger protein 186 [Homo sapiens]
          Length = 227

 Score = 27.3 bits (59), Expect = 2.6
 Identities = 14/56 (25%), Positives = 26/56 (46%)

Query: 22  ETSAKDRIINLVVGSLTSLLILVTLISAFVFPQLPPKPLNIFFAVCISLSSITACI 77
           E SA       +   L  L +L+ LI  F++P +    L    A+ + +S++  C+
Sbjct: 144 EVSANHVAARRLAAHLLLLALLIILIGPFIYPGVLRWVLTFIIALALLMSTLFCCL 199


>gi|5921992 adenosine A2a receptor [Homo sapiens]
          Length = 412

 Score = 26.6 bits (57), Expect = 4.5
 Identities = 22/93 (23%), Positives = 43/93 (46%), Gaps = 11/93 (11%)

Query: 14  LDNRPLFGETSAKD--------RIINLVVGSLTSLLILVTLISAFVF--PQLPPKPLNIF 63
           ++++PL GE +           + + ++VG      + + +I+ F F  P     PL + 
Sbjct: 211 MESQPLPGERARSTLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSHAPLWLM 270

Query: 64  F-AVCISLSSITACILIYWYRQGDLEPKFRKLI 95
           + A+ +S ++      IY YR  +    FRK+I
Sbjct: 271 YLAIVLSHTNSVVNPFIYAYRIREFRQTFRKII 303


>gi|239582720 ATG9 autophagy related 9 homolog B [Homo sapiens]
          Length = 924

 Score = 26.6 bits (57), Expect = 4.5
 Identities = 16/42 (38%), Positives = 23/42 (54%)

Query: 20  FGETSAKDRIINLVVGSLTSLLILVTLISAFVFPQLPPKPLN 61
           +G TSA+      V+ + TS L    L + FV P LPP+ L+
Sbjct: 742 WGATSARGPSTPGVLSNCTSPLPEAFLANLFVHPLLPPRDLS 783


>gi|74271832 G protein-coupled receptor 155 isoform 9 [Homo sapiens]
          Length = 870

 Score = 26.6 bits (57), Expect = 4.5
 Identities = 22/93 (23%), Positives = 44/93 (47%), Gaps = 12/93 (12%)

Query: 31  NLVVGSLTSLLILVTLISA---------FVFPQLPPKPLNIFFA-VCISLSSITACILIY 80
           N+ V  +TS +++ T +SA           FP + PKPL      V   +S ++   LI+
Sbjct: 337 NMEVEIITSGMVISTFVSAPIMYVSAWLLTFPTMDPKPLAYAIQNVSFDISIVSLISLIW 396

Query: 81  WYRQGDLEPKFRKLIYYIIFSIIML--CICANL 111
                 L  K+++L + +  ++++    +CA +
Sbjct: 397 SLAILLLSKKYKQLPHMLTTNLLIAQSIVCAGM 429


>gi|74271834 G protein-coupled receptor 155 isoform 10 [Homo
           sapiens]
          Length = 870

 Score = 26.6 bits (57), Expect = 4.5
 Identities = 22/93 (23%), Positives = 44/93 (47%), Gaps = 12/93 (12%)

Query: 31  NLVVGSLTSLLILVTLISA---------FVFPQLPPKPLNIFFA-VCISLSSITACILIY 80
           N+ V  +TS +++ T +SA           FP + PKPL      V   +S ++   LI+
Sbjct: 337 NMEVEIITSGMVISTFVSAPIMYVSAWLLTFPTMDPKPLAYAIQNVSFDISIVSLISLIW 396

Query: 81  WYRQGDLEPKFRKLIYYIIFSIIML--CICANL 111
                 L  K+++L + +  ++++    +CA +
Sbjct: 397 SLAILLLSKKYKQLPHMLTTNLLIAQSIVCAGM 429


>gi|7706769 chemokine (C-C motif) receptor-like 1 [Homo sapiens]
          Length = 350

 Score = 26.2 bits (56), Expect = 5.9
 Identities = 13/37 (35%), Positives = 21/37 (56%)

Query: 40  LLILVTLISAFVFPQLPPKPLNIFFAVCISLSSITAC 76
           L +L+T++  F+  QLP   +    A+ I  S IT+C
Sbjct: 239 LKVLLTVVIVFIVTQLPYNIVKFCRAIDIIYSLITSC 275


>gi|30795217 chemokine (C-C motif) receptor-like 1 [Homo sapiens]
          Length = 350

 Score = 26.2 bits (56), Expect = 5.9
 Identities = 13/37 (35%), Positives = 21/37 (56%)

Query: 40  LLILVTLISAFVFPQLPPKPLNIFFAVCISLSSITAC 76
           L +L+T++  F+  QLP   +    A+ I  S IT+C
Sbjct: 239 LKVLLTVVIVFIVTQLPYNIVKFCRAIDIIYSLITSC 275


>gi|51921381 olfactory receptor, family 2, subfamily T, member 2
           [Homo sapiens]
          Length = 324

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 11/23 (47%), Positives = 16/23 (69%)

Query: 89  PKFRKLIYYIIFSIIMLCICANL 111
           P F  L++ I+FSI ++ I ANL
Sbjct: 22  PAFPGLLFAIVFSIFVVAITANL 44


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.332    0.147    0.456 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,188,347
Number of Sequences: 37866
Number of extensions: 153935
Number of successful extensions: 477
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 461
Number of HSP's gapped (non-prelim): 19
length of query: 118
length of database: 18,247,518
effective HSP length: 88
effective length of query: 30
effective length of database: 14,915,310
effective search space: 447459300
effective search space used: 447459300
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.