Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: C7orf23 Sequence: fasta or formatted (118aa) NCBI GI: 13236557
Description:

chromosome 7 open reading frame 23

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.1          6           1
 C cysteine            3.4          4           1
 D aspartate           4.2          5           1
 E glutamate           2.5          3           1
 F phenylalanine       7.6          9           2
 G glycine             5.1          6           1
 H histidine           0.8          1           1
 I isoleucine         12.7         15           2
 K lysine              3.4          4           1
 L leucine            13.6         16           2
 M methionine          1.7          2           1
 N asparagine          3.4          4           1
 P proline             5.1          6           2
 Q glutamine           1.7          2           1
 R arginine            5.1          6           1
 S serine              7.6          9           2
 T threonine           5.9          7           1
 V valine              5.1          6           2
 W tryptophan          0.8          1           1
 Y tyrosine            5.1          6           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   chromosome 7 open reading frame 23 
NMBR                  0.028   neuromedin B receptor 
TMEM72                0.023   transmembrane protein 72 
GDAP1                 0.023   ganglioside-induced differentiation-associated prot...
GDAP1                 0.023   ganglioside-induced differentiation-associated prot...
LOC100291751          0.014   PREDICTED: hypothetical protein XP_002345809, parti...
EIF2C3                0.014   eukaryotic translation initiation factor 2C, 3 isofo...
EIF2C3                0.014   eukaryotic translation initiation factor 2C, 3 isofo...
SLC43A2               0.014   solute carrier family 43, member 2 
RNF186                0.009   ring finger protein 186 
ADORA2A               0.009   adenosine A2a receptor 
ATG9B                 0.009   ATG9 autophagy related 9 homolog B 
GPR155                0.009   G protein-coupled receptor 155 isoform 9 
GPR155                0.009   G protein-coupled receptor 155 isoform 10 
CCRL1                 0.005   chemokine (C-C motif) receptor-like 1 
CCRL1                 0.005   chemokine (C-C motif) receptor-like 1 
OR2T2                 0.005   olfactory receptor, family 2, subfamily T, member 2 ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press