Guide to the Human Genome
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Name: HMGCLL1 Sequence: fasta or formatted (370aa) NCBI GI: 109150427
Description:

3-hydroxymethyl-3-methylglutaryl-Coenzyme A lyase-like 1 isoform a

Referenced in:

Amino Acid Catabolism
Fatty Acid Oxidation and Ketone Bodies

Other entries for this name:
alt prot [340aa] 3-hydroxymethyl-3-methylglutaryl-Coenzyme A lyase-like 1 isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.1         30           2
 C cysteine            2.7         10           1
 D aspartate           3.0         11           1
 E glutamate           5.7         21           2
 F phenylalanine       3.0         11           1
 G glycine             9.7         36           2
 H histidine           3.0         11           2
 I isoleucine          5.7         21           1
 K lysine              4.9         18           2
 L leucine             8.1         30           2
 M methionine          3.2         12           1
 N asparagine          4.6         17           1
 P proline             4.6         17           2
 Q glutamine           3.8         14           2
 R arginine            2.4          9           1
 S serine              8.6         32           2
 T threonine           5.4         20           2
 V valine              9.7         36           2
 W tryptophan          0.8          3           1
 Y tyrosine            3.0         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   3-hydroxymethyl-3-methylglutaryl-Coenzyme A lyase-l... 
HMGCLL1               0.890   3-hydroxymethyl-3-methylglutaryl-Coenzyme A lyase-l...
HMGCL                 0.586   3-hydroxy-3-methylglutaryl CoA lyase 
PC                    0.031   pyruvate carboxylase precursor 
PC                    0.031   pyruvate carboxylase precursor 
PC                    0.031   pyruvate carboxylase precursor 
PLD1                  0.013   phospholipase D1 isoform b 
ADCY2                 0.006   adenylate cyclase 2 
ZNF451                0.006   zinc finger protein 451 isoform 2 
ZNF451                0.006   zinc finger protein 451 isoform 1 
LOC100130736          0.006   PREDICTED: similar to tubulin, beta 5 
LOC100130736          0.006   PREDICTED: similar to tubulin, beta 5 
TOP2B                 0.006   DNA topoisomerase II, beta isozyme 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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