Search of human proteins with 4507607

Search of human proteins with 4507607

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|4507607 tumor necrosis factor (ligand) superfamily, member 8
[Homo sapiens]
         (234 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|4507607 tumor necrosis factor (ligand) superfamily, member 8 ...   474   e-134
gi|4557329 fas ligand [Homo sapiens]                                   34   0.095
gi|25952111 tumor necrosis factor alpha [Homo sapiens]                 29   3.0  
gi|4502523 calcium channel, voltage-dependent, N type, alpha 1B ...    29   4.0  
gi|4507597 tumor necrosis factor (ligand) superfamily, member 12...    28   5.2  
gi|47778940 C-type lectin, superfamily member 13 [Homo sapiens]        28   5.2  
gi|187828892 calcium channel, alpha 1A subunit isoform 4 [Homo s...    28   8.9  
gi|187828880 calcium channel, alpha 1A subunit isoform 3 [Homo s...    28   8.9  
gi|27734871 regulatory factor X, 6 [Homo sapiens]                      28   8.9  

>gi|4507607 tumor necrosis factor (ligand) superfamily, member 8
           [Homo sapiens]
          Length = 234

 Score =  474 bits (1220), Expect = e-134
 Identities = 234/234 (100%), Positives = 234/234 (100%)

Query: 1   MDPGLQQALNGMAPPGDTAMHVPAGSVASHLGTTSRSYFYLTTATLALCLVFTVATIMVL 60
           MDPGLQQALNGMAPPGDTAMHVPAGSVASHLGTTSRSYFYLTTATLALCLVFTVATIMVL
Sbjct: 1   MDPGLQQALNGMAPPGDTAMHVPAGSVASHLGTTSRSYFYLTTATLALCLVFTVATIMVL 60

Query: 61  VVQRTDSIPNSPDNVPLKGGNCSEDLLCILKRAPFKKSWAYLQVAKHLNKTKLSWNKDGI 120
           VVQRTDSIPNSPDNVPLKGGNCSEDLLCILKRAPFKKSWAYLQVAKHLNKTKLSWNKDGI
Sbjct: 61  VVQRTDSIPNSPDNVPLKGGNCSEDLLCILKRAPFKKSWAYLQVAKHLNKTKLSWNKDGI 120

Query: 121 LHGVRYQDGNLVIQFPGLYFIICQLQFLVQCPNNSVDLKLELLINKHIKKQALVTVCESG 180
           LHGVRYQDGNLVIQFPGLYFIICQLQFLVQCPNNSVDLKLELLINKHIKKQALVTVCESG
Sbjct: 121 LHGVRYQDGNLVIQFPGLYFIICQLQFLVQCPNNSVDLKLELLINKHIKKQALVTVCESG 180

Query: 181 MQTKHVYQNLSQFLLDYLQVNTTISVNVDTFQYIDTSTFPLENVLSIFLYSNSD 234
           MQTKHVYQNLSQFLLDYLQVNTTISVNVDTFQYIDTSTFPLENVLSIFLYSNSD
Sbjct: 181 MQTKHVYQNLSQFLLDYLQVNTTISVNVDTFQYIDTSTFPLENVLSIFLYSNSD 234


>gi|4557329 fas ligand [Homo sapiens]
          Length = 281

 Score = 34.3 bits (77), Expect = 0.095
 Identities = 16/35 (45%), Positives = 22/35 (62%)

Query: 120 ILHGVRYQDGNLVIQFPGLYFIICQLQFLVQCPNN 154
           +L GV+Y+ G LVI   GLYF+  ++ F  Q  NN
Sbjct: 170 LLSGVKYKKGGLVINETGLYFVYSKVYFRGQSCNN 204


>gi|25952111 tumor necrosis factor alpha [Homo sapiens]
          Length = 233

 Score = 29.3 bits (64), Expect = 3.0
 Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 6/70 (8%)

Query: 92  RAPFKKSWAYLQVAKHLNKTKLSW-NKDG---ILHGVRYQDGNLVIQFPGLYFIICQLQF 147
           R P  K  A++ VA    + +L W N+     + +GV  +D  LV+   GLY I  Q+ F
Sbjct: 82  RTPSDKPVAHV-VANPQAEGQLQWLNRRANALLANGVELRDNQLVVPSEGLYLIYSQVLF 140

Query: 148 LVQ-CPNNSV 156
             Q CP+  V
Sbjct: 141 KGQGCPSTHV 150


>gi|4502523 calcium channel, voltage-dependent, N type, alpha 1B
            subunit [Homo sapiens]
          Length = 2339

 Score = 28.9 bits (63), Expect = 4.0
 Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 2/58 (3%)

Query: 157  DLKLELLINKHIKKQALVTVCESGMQTKHVYQNLSQFLLDYLQVNTTISVNVDTFQYI 214
            ++ L  L N+   +QA  T C  G    + Y     FL  +L +N  ++V +D F+Y+
Sbjct: 1659 EIMLSCLSNQACDEQANATEC--GSDFAYFYFVSFIFLCSFLMLNLFVAVIMDNFEYL 1714


>gi|4507597 tumor necrosis factor (ligand) superfamily, member 12
           precursor [Homo sapiens]
          Length = 249

 Score = 28.5 bits (62), Expect = 5.2
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 3/39 (7%)

Query: 127 QDGNLVIQFPGLYFIICQLQFLVQCPNNSVDLKLELLIN 165
           Q G  ++   GLY++ CQ+ F       +V LKL+LL++
Sbjct: 149 QIGEFIVTRAGLYYLYCQVHF---DEGKAVYLKLDLLVD 184


>gi|47778940 C-type lectin, superfamily member 13 [Homo sapiens]
          Length = 589

 Score = 28.5 bits (62), Expect = 5.2
 Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 1/45 (2%)

Query: 42 TTATLALCLVFTVATIMVLVVQRTDSIPNSPDNVPLKGGNCSEDL 86
          T A +A+ LVF++ T+ V+V Q+T  +P  P    + G N +  L
Sbjct: 41 TPAFMAVTLVFSLVTLFVVVQQQTRPVP-KPVQAVILGDNITGHL 84


>gi|187828892 calcium channel, alpha 1A subunit isoform 4 [Homo
            sapiens]
          Length = 2506

 Score = 27.7 bits (60), Expect = 8.9
 Identities = 15/58 (25%), Positives = 28/58 (48%)

Query: 157  DLKLELLINKHIKKQALVTVCESGMQTKHVYQNLSQFLLDYLQVNTTISVNVDTFQYI 214
            ++ L  L  K   K + +   E G +  + Y     FL  +L +N  ++V +D F+Y+
Sbjct: 1759 NIMLSCLSGKPCDKNSGILTRECGNEFAYFYFVSFIFLCSFLMLNLFVAVIMDNFEYL 1816


>gi|187828880 calcium channel, alpha 1A subunit isoform 3 [Homo
            sapiens]
          Length = 2261

 Score = 27.7 bits (60), Expect = 8.9
 Identities = 15/58 (25%), Positives = 28/58 (48%)

Query: 157  DLKLELLINKHIKKQALVTVCESGMQTKHVYQNLSQFLLDYLQVNTTISVNVDTFQYI 214
            ++ L  L  K   K + +   E G +  + Y     FL  +L +N  ++V +D F+Y+
Sbjct: 1760 NIMLSCLSGKPCDKNSGILTRECGNEFAYFYFVSFIFLCSFLMLNLFVAVIMDNFEYL 1817


>gi|27734871 regulatory factor X, 6 [Homo sapiens]
          Length = 928

 Score = 27.7 bits (60), Expect = 8.9
 Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 8/68 (11%)

Query: 154 NSVDLKLELLINKHIKKQALVTVC-----ESGMQTKHVYQNLSQFLLDYLQVNTTISVNV 208
           NS+   +E +    I  QAL+T+      ESG+ T+H    + Q L D L+ N T+   +
Sbjct: 407 NSMVSDIERVDLNSIGSQALLTISGSTDTESGIYTEHDSITVFQELKDLLKKNATVEAFI 466

Query: 209 DTFQYIDT 216
              +++DT
Sbjct: 467 ---EWLDT 471


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.321    0.136    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,918,087
Number of Sequences: 37866
Number of extensions: 367427
Number of successful extensions: 821
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 813
Number of HSP's gapped (non-prelim): 12
length of query: 234
length of database: 18,247,518
effective HSP length: 99
effective length of query: 135
effective length of database: 14,498,784
effective search space: 1957335840
effective search space used: 1957335840
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.