Search of human proteins with 4507605

Search of human proteins with 4507605

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|4507605 tumor necrosis factor ligand superfamily, member 7
[Homo sapiens]
         (193 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|4507605 tumor necrosis factor ligand superfamily, member 7 [H...   399   e-111
gi|4557433 CD40 ligand [Homo sapiens]                                  33   0.15 
gi|209529731 hypothetical protein LOC254013 [Homo sapiens]             31   0.75 
gi|209529729 hypothetical protein LOC254013 [Homo sapiens]             31   0.75 
gi|28603834 hypothetical protein LOC254013 [Homo sapiens]              31   0.75 
gi|18141316 splA/ryanodine receptor domain and SOCS box containi...    30   0.98 
gi|157743288 gamma-aminobutyric acid (GABA) receptor, rho 3 [Hom...    29   2.2  
gi|30425506 transmembrane protein 52 [Homo sapiens]                    28   3.7  
gi|163965434 dapper, antagonist of beta-catenin, homolog 2 [Homo...    28   3.7  
gi|18254460 splA/ryanodine receptor domain and SOCS box containi...    28   4.8  
gi|164698438 thymidine kinase 1 [Homo sapiens]                         28   6.3  
gi|33359215 ALS2 C-terminal like isoform 1 [Homo sapiens]              28   6.3  

>gi|4507605 tumor necrosis factor ligand superfamily, member 7 [Homo
           sapiens]
          Length = 193

 Score =  399 bits (1024), Expect = e-111
 Identities = 193/193 (100%), Positives = 193/193 (100%)

Query: 1   MPEEGSGCSVRRRPYGCVLRAALVPLVAGLVICLVVCIQRFAQAQQQLPLESLGWDVAEL 60
           MPEEGSGCSVRRRPYGCVLRAALVPLVAGLVICLVVCIQRFAQAQQQLPLESLGWDVAEL
Sbjct: 1   MPEEGSGCSVRRRPYGCVLRAALVPLVAGLVICLVVCIQRFAQAQQQLPLESLGWDVAEL 60

Query: 61  QLNHTGPQQDPRLYWQGGPALGRSFLHGPELDKGQLRIHRDGIYMVHIQVTLAICSSTTA 120
           QLNHTGPQQDPRLYWQGGPALGRSFLHGPELDKGQLRIHRDGIYMVHIQVTLAICSSTTA
Sbjct: 61  QLNHTGPQQDPRLYWQGGPALGRSFLHGPELDKGQLRIHRDGIYMVHIQVTLAICSSTTA 120

Query: 121 SRHHPTTLAVGICSPASRSISLLRLSFHQGCTIASQRLTPLARGDTLCTNLTGTLLPSRN 180
           SRHHPTTLAVGICSPASRSISLLRLSFHQGCTIASQRLTPLARGDTLCTNLTGTLLPSRN
Sbjct: 121 SRHHPTTLAVGICSPASRSISLLRLSFHQGCTIASQRLTPLARGDTLCTNLTGTLLPSRN 180

Query: 181 TDETFFGVQWVRP 193
           TDETFFGVQWVRP
Sbjct: 181 TDETFFGVQWVRP 193


>gi|4557433 CD40 ligand [Homo sapiens]
          Length = 261

 Score = 33.1 bits (74), Expect = 0.15
 Identities = 29/101 (28%), Positives = 44/101 (43%), Gaps = 9/101 (8%)

Query: 95  QLRIHRDGIYMVHIQVTLAICSSTTASRHHPTTLAVGICSPASRSISLLR-LSFHQGCTI 153
           QL + R G+Y ++ QVT   CS+  AS   P   ++ + SP      LLR  + H     
Sbjct: 160 QLTVKRQGLYYIYAQVT--FCSNREASSQAPFIASLCLKSPGRFERILLRAANTHSSAKP 217

Query: 154 ASQR------LTPLARGDTLCTNLTGTLLPSRNTDETFFGV 188
             Q+      +  L  G ++  N+T     S  T  T FG+
Sbjct: 218 CGQQSIHLGGVFELQPGASVFVNVTDPSQVSHGTGFTSFGL 258


>gi|209529731 hypothetical protein LOC254013 [Homo sapiens]
          Length = 262

 Score = 30.8 bits (68), Expect = 0.75
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 7/43 (16%)

Query: 55  WDVAELQLNHTGPQQDP--RLYWQGGPALGRSFLHGPELDKGQ 95
           W+ A+L      P  DP   +YW GG AL R  L  P++ +G+
Sbjct: 80  WERADLW-----PHSDPYWAIYWPGGQALSRYLLDNPDVVRGK 117


>gi|209529729 hypothetical protein LOC254013 [Homo sapiens]
          Length = 262

 Score = 30.8 bits (68), Expect = 0.75
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 7/43 (16%)

Query: 55  WDVAELQLNHTGPQQDP--RLYWQGGPALGRSFLHGPELDKGQ 95
           W+ A+L      P  DP   +YW GG AL R  L  P++ +G+
Sbjct: 80  WERADLW-----PHSDPYWAIYWPGGQALSRYLLDNPDVVRGK 117


>gi|28603834 hypothetical protein LOC254013 [Homo sapiens]
          Length = 262

 Score = 30.8 bits (68), Expect = 0.75
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 7/43 (16%)

Query: 55  WDVAELQLNHTGPQQDP--RLYWQGGPALGRSFLHGPELDKGQ 95
           W+ A+L      P  DP   +YW GG AL R  L  P++ +G+
Sbjct: 80  WERADLW-----PHSDPYWAIYWPGGQALSRYLLDNPDVVRGK 117


>gi|18141316 splA/ryanodine receptor domain and SOCS box containing
           1 [Homo sapiens]
          Length = 273

 Score = 30.4 bits (67), Expect = 0.98
 Identities = 22/64 (34%), Positives = 28/64 (43%), Gaps = 13/64 (20%)

Query: 51  ESLGWDVAELQLNHTGPQQDPRLYWQGGPA---------LGRSFLHGPELDKGQLRIHRD 101
           ES GWD+   +L H G  Q  + Y    PA         +  SFL   ++D G L    D
Sbjct: 138 ESWGWDLGRNRLYHDGKNQPSKTY----PAFLEPDETFIVPDSFLVALDMDDGTLSFIVD 193

Query: 102 GIYM 105
           G YM
Sbjct: 194 GQYM 197


>gi|157743288 gamma-aminobutyric acid (GABA) receptor, rho 3 [Homo
           sapiens]
          Length = 467

 Score = 29.3 bits (64), Expect = 2.2
 Identities = 12/34 (35%), Positives = 23/34 (67%), Gaps = 1/34 (2%)

Query: 83  RSFLHGPELDKGQLRIHRDGIYMVHIQVTL-AIC 115
           RSF+H   ++   LR+H DG  ++ +++T+ A+C
Sbjct: 151 RSFIHDTTMENIMLRVHPDGNVLLSLRITVSAMC 184


>gi|30425506 transmembrane protein 52 [Homo sapiens]
          Length = 209

 Score = 28.5 bits (62), Expect = 3.7
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 2/54 (3%)

Query: 16  GCVLRAALVPLVAGLVICLV--VCIQRFAQAQQQLPLESLGWDVAELQLNHTGP 67
           G +L A L+ L+ G+    V   C+++ AQAQ  LP      DVA + ++   P
Sbjct: 57  GLILLAVLLLLLCGVTAGCVRFCCLRKQAQAQPHLPPARQPCDVAVIPMDSDSP 110


>gi|163965434 dapper, antagonist of beta-catenin, homolog 2 [Homo
           sapiens]
          Length = 774

 Score = 28.5 bits (62), Expect = 3.7
 Identities = 25/83 (30%), Positives = 33/83 (39%), Gaps = 13/83 (15%)

Query: 2   PEEGSGCSVRRRPYGCVLRAALVPLVAGLVICLVVCIQRFAQAQQQLPLESLGWDVAELQ 61
           P +     ++R P   VLR A  PL+          + R  +     P  SL WD A   
Sbjct: 491 PPKSKAEKIKRSPMDKVLRFARQPLLL---------LDR-PEGAHAAPQPSLEWDPAHWP 540

Query: 62  LNHTGPQQDPRLYWQGGPALGRS 84
               G Q+ P L W+   A GRS
Sbjct: 541 TGRGGLQRRPALAWE---APGRS 560


>gi|18254460 splA/ryanodine receptor domain and SOCS box containing
           4 [Homo sapiens]
          Length = 273

 Score = 28.1 bits (61), Expect = 4.8
 Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 7/61 (11%)

Query: 51  ESLGWDVAELQLNHTGPQQDPRLYWQG--GP----ALGRSFLHGPELDKGQLRIHRDGIY 104
           ES GWD+   +L H G  Q P + +    GP    AL  S L   ++D+G L    DG Y
Sbjct: 138 ESWGWDLGRSRLYHDGKNQ-PGVAYPAFLGPDEAFALPDSLLVVLDMDEGTLSFIVDGQY 196

Query: 105 M 105
           +
Sbjct: 197 L 197


>gi|164698438 thymidine kinase 1 [Homo sapiens]
          Length = 234

 Score = 27.7 bits (60), Expect = 6.3
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 2/34 (5%)

Query: 11  RRRPYGCVLRAALVPLVAGLVICLVVCIQRFAQA 44
           +R+P+G +L   LVPL   +V    VC++ F +A
Sbjct: 129 QRKPFGAILN--LVPLAESVVKLTAVCMECFREA 160


>gi|33359215 ALS2 C-terminal like isoform 1 [Homo sapiens]
          Length = 953

 Score = 27.7 bits (60), Expect = 6.3
 Identities = 33/121 (27%), Positives = 46/121 (38%), Gaps = 13/121 (10%)

Query: 74  YWQGGPALGRSFLHGPELDK------GQLRIHRDGIYMVHIQVTLAICSSTTASRHHPT- 126
           YW+G     R  L G   +       GQ  +H+   + V   V L +    T   HHPT 
Sbjct: 125 YWRGQRKALRQLLSGVSSEGSVGASLGQA-LHQPLAHHVQQYVLLLLSLGDTIGEHHPTR 183

Query: 127 TLAVGICSPASRSISLLRLSFHQGCTIASQRLTPLARG---DTLCTNLTGTLLPSRNTDE 183
            L V   +      S ++    Q   +A+Q L    RG   D LCT     L  S++   
Sbjct: 184 ELVVNAVTLFGNLQSFMKQELDQ--AVATQALWHTLRGRLRDVLCTPAHRLLQDSQDVPV 241

Query: 184 T 184
           T
Sbjct: 242 T 242


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.324    0.138    0.440 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,142,386
Number of Sequences: 37866
Number of extensions: 350140
Number of successful extensions: 910
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 904
Number of HSP's gapped (non-prelim): 12
length of query: 193
length of database: 18,247,518
effective HSP length: 97
effective length of query: 96
effective length of database: 14,574,516
effective search space: 1399153536
effective search space used: 1399153536
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.