Search of human proteins with 4506913

Search of human proteins with 4506913

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|4506913 sarcoglycan, beta [Homo sapiens]
         (318 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|4506913 sarcoglycan, beta [Homo sapiens]                           634   0.0  
gi|94721265 sarcoglycan zeta [Homo sapiens]                            54   1e-07
gi|4557847 gamma sarcoglycan [Homo sapiens]                            54   2e-07
gi|189571662 delta-sarcoglycan isoform 3 [Homo sapiens]                54   2e-07
gi|21314619 delta-sarcoglycan isoform 1 [Homo sapiens]                 54   2e-07
gi|27477101 delta-sarcoglycan isoform 2 [Homo sapiens]                 37   0.018
gi|93102379 low density lipoprotein-related protein 1B precursor...    30   3.7  
gi|222418615 integrin alpha 7 isoform 3 [Homo sapiens]                 29   4.8  
gi|222418613 integrin alpha 7 isoform 1 precursor [Homo sapiens]       29   4.8  
gi|56237021 fibrillin 3 precursor [Homo sapiens]                       29   4.8  
gi|28933465 syntaxin 12 [Homo sapiens]                                 29   4.8  
gi|170932494 syntaxin 7 [Homo sapiens]                                 29   6.3  
gi|63998898 Yeast Sps1/Ste20-related kinase 4 isoform 2 [Homo sa...    29   6.3  
gi|55749865 DEAD (Asp-Glu-Ala-Asp) box polypeptide 53 [Homo sapi...    28   8.2  

>gi|4506913 sarcoglycan, beta [Homo sapiens]
          Length = 318

 Score =  634 bits (1635), Expect = 0.0
 Identities = 318/318 (100%), Positives = 318/318 (100%)

Query: 1   MAAAAAAAAEQQSSNGPVKKSMREKAVERRSVNKEHNSNFKAGYIPIDEDRLHKTGLRGR 60
           MAAAAAAAAEQQSSNGPVKKSMREKAVERRSVNKEHNSNFKAGYIPIDEDRLHKTGLRGR
Sbjct: 1   MAAAAAAAAEQQSSNGPVKKSMREKAVERRSVNKEHNSNFKAGYIPIDEDRLHKTGLRGR 60

Query: 61  KGNLAICVIILLFILAVINLIITLVIWAVIRIGPNGCDSMEFHESGLLRFKQVSDMGVIH 120
           KGNLAICVIILLFILAVINLIITLVIWAVIRIGPNGCDSMEFHESGLLRFKQVSDMGVIH
Sbjct: 61  KGNLAICVIILLFILAVINLIITLVIWAVIRIGPNGCDSMEFHESGLLRFKQVSDMGVIH 120

Query: 121 PLYKSTVGGRRNENLVITGNNQPIVFQQGTTKLSVENNKTSITSDIGMQFFDPRTQNILF 180
           PLYKSTVGGRRNENLVITGNNQPIVFQQGTTKLSVENNKTSITSDIGMQFFDPRTQNILF
Sbjct: 121 PLYKSTVGGRRNENLVITGNNQPIVFQQGTTKLSVENNKTSITSDIGMQFFDPRTQNILF 180

Query: 181 STDYETHEFHLPSGVKSLNVQKASTERITSNATSDLNIKVDGRAIVRGNEGVFIMGKTIE 240
           STDYETHEFHLPSGVKSLNVQKASTERITSNATSDLNIKVDGRAIVRGNEGVFIMGKTIE
Sbjct: 181 STDYETHEFHLPSGVKSLNVQKASTERITSNATSDLNIKVDGRAIVRGNEGVFIMGKTIE 240

Query: 241 FHMGGNMELKAENSIILNGSVMVSTTRLPSSSSGDQLGSGDWVRYKLCMCADGTLFKVQV 300
           FHMGGNMELKAENSIILNGSVMVSTTRLPSSSSGDQLGSGDWVRYKLCMCADGTLFKVQV
Sbjct: 241 FHMGGNMELKAENSIILNGSVMVSTTRLPSSSSGDQLGSGDWVRYKLCMCADGTLFKVQV 300

Query: 301 TSQNMGCQISDNPCGNTH 318
           TSQNMGCQISDNPCGNTH
Sbjct: 301 TSQNMGCQISDNPCGNTH 318


>gi|94721265 sarcoglycan zeta [Homo sapiens]
          Length = 312

 Score = 54.3 bits (129), Expect = 1e-07
 Identities = 63/284 (22%), Positives = 117/284 (41%), Gaps = 29/284 (10%)

Query: 51  RLHKTGLRGRKGNLAICVIILLFILAVINLIITLVIWAVIRIGPNGCDSMEFHESGLLRF 110
           +L+  G+ G +       ++LL +  ++NL +T+ I  V+    +G  ++   + G+ R 
Sbjct: 35  QLYPVGIYGWRKRCLYFFVLLLLVTMIVNLAMTIWILKVMNFTVDGMGNLRVTKKGI-RL 93

Query: 111 KQVSDMGVIHPLYKSTVGGRRNENLVITGN-NQPIVFQQGTTKLSVENNKTSITSDIGMQ 169
           + +S+   + PLY   +  R++  LV+  + N  +  +    +L+ +    +   +   +
Sbjct: 94  EGISEF--LLPLYVKEIHSRKDSPLVLQSDRNVTVNARNHMGQLTGQLTIGADAVEAQCK 151

Query: 170 FFDPRTQN---ILFSTDYETHEFHLPSGVKSLNV---------QKASTERITSNATSDLN 217
            F+ R      +LFS D    E  +  G + L V             T  I +  + DL 
Sbjct: 152 RFEVRASEDGRVLFSAD----EDEITIGAEKLKVTGTEGAVFGHSVETPHIRAEPSQDLR 207

Query: 218 IKVDGRAIV-RGNEGVFIMGKTIEFHMGGNMEL---KAENSIILNGSVMVSTTRLPS--- 270
           ++   R+++     GV +     +F      EL     E  I LN    +    LP+   
Sbjct: 208 LESPTRSLIMEAPRGVQVSAAAGDFKATCRKELHLQSTEGEIFLNAET-IKLGNLPTGSF 266

Query: 271 SSSGDQLGSGDWVRYKLCMCADGTLFKVQVTSQNMGCQISDNPC 314
           SSS     S     Y+LC+C +G L+ +        CQ S N C
Sbjct: 267 SSSSPSSSSSRQTVYELCVCPNGKLY-LSPAGVGSTCQSSSNIC 309


>gi|4557847 gamma sarcoglycan [Homo sapiens]
          Length = 291

 Score = 53.9 bits (128), Expect = 2e-07
 Identities = 61/282 (21%), Positives = 114/282 (40%), Gaps = 33/282 (11%)

Query: 52  LHKTGLRGRKGNLAICVIILLFILAVINLIITLVIWAVIRIGPNGCDSMEFHESGLLRFK 111
           ++K G+ G +       ++LL I+ V+NL +T+ I  V+   P G   +   + G LR +
Sbjct: 23  VYKIGIYGWRKRCLYLFVLLLLIILVVNLALTIWILKVMWFSPAGMGHLCVTKDG-LRLE 81

Query: 112 QVSDMGVIHPLYKSTVGGRRNENLVITGNNQPIV------------FQQGTTKLSVENNK 159
             S+   + PLY   +  R + +L++       V             + G   + V+N +
Sbjct: 82  GESEF--LFPLYAKEIHSRVDSSLLLQSTQNVTVNARNSEGEVTGRLKVGPKMVEVQNQQ 139

Query: 160 TSITSDIGMQFFDPRTQNILFSTDYETHEFHLPSGVKSLNVQKASTERITSNATSDLNIK 219
             I S+ G   F    + ++  TD    +  +     +L      T  + ++   DL ++
Sbjct: 140 FQINSNDGKPLFTVDEKEVVVGTD----KLRVTGPEGALFEHSVETPLVRADPFQDLRLE 195

Query: 220 VDGRAI-VRGNEGVFIMGKTIEFHMGGNMELKAENSIILNGS-----VMVSTTRLPSSSS 273
              R++ +    GV I          G +E  ++  I+ + S     +   T  LP    
Sbjct: 196 SPTRSLSMDAPRGVHIQAH------AGKIEALSQMDILFHSSDGMLVLDAETVCLPKLVQ 249

Query: 274 GDQLGSG-DWVRYKLCMCADGTLFKVQVTSQNMGCQISDNPC 314
           G    SG     Y++C+C DG L+ + V   +  CQ   + C
Sbjct: 250 GTWGPSGSSQSLYEICVCPDGKLY-LSVAGVSTTCQEHSHIC 290


>gi|189571662 delta-sarcoglycan isoform 3 [Homo sapiens]
          Length = 289

 Score = 53.5 bits (127), Expect = 2e-07
 Identities = 61/283 (21%), Positives = 117/283 (41%), Gaps = 33/283 (11%)

Query: 51  RLHKTGLRGRKGNLAICVIILLFILAVINLIITLVIWAVIRIGPNGCDSMEFHESGLLRF 110
           +++K G+ G +       ++LL IL ++NL +T+ I  V+    +G  ++   E GL   
Sbjct: 20  QVYKVGIYGWRKRCLYFFVLLLMILILVNLAMTIWILKVMNFTIDGMGNLRITEKGL--- 76

Query: 111 KQVSDMGVIHPLYKSTVGGR----------RNENLVITGNNQPIVFQQGTTKLSVE--NN 158
           K   D   + PLY   +  R          RN  + I  +   ++ Q  T   +VE    
Sbjct: 77  KLEGDSEFLQPLYAKEIQSRPGNALYFKSARNVTVNILNDQTKVLTQLITGPKAVEAYGK 136

Query: 159 KTSITSDIGMQFFDPRTQNILFSTDYETHEFHLPSGVKSLNVQKASTERITSNATSDLNI 218
           K  + +  G   F      ++   +       +     ++  +   T  + ++   +L +
Sbjct: 137 KFEVKTVSGKLLFSADNNEVVVGAE----RLRVLGAEGTVFPKSIETPNVRADPFKELRL 192

Query: 219 KVDGRAIV-RGNEGVFIMGKTIEFHMGGNMELKAENSIIL---NGSVMVSTT--RLPSSS 272
           +   R++V    +GV I  +       GNME      + L   +G + +     RLP   
Sbjct: 193 ESPTRSLVMEAPKGVEINAE------AGNMEATCRTELRLESKDGEIKLDAAKIRLPRLP 246

Query: 273 SGDQLGSGDWVR-YKLCMCADGTLFKVQVTSQNMGCQISDNPC 314
            G    +G   + +++C+CA+G LF  Q  + +  CQI+ + C
Sbjct: 247 HGSYTPTGTRQKVFEICVCANGRLFLSQAGAGST-CQINTSVC 288


>gi|21314619 delta-sarcoglycan isoform 1 [Homo sapiens]
          Length = 290

 Score = 53.5 bits (127), Expect = 2e-07
 Identities = 61/283 (21%), Positives = 117/283 (41%), Gaps = 33/283 (11%)

Query: 51  RLHKTGLRGRKGNLAICVIILLFILAVINLIITLVIWAVIRIGPNGCDSMEFHESGLLRF 110
           +++K G+ G +       ++LL IL ++NL +T+ I  V+    +G  ++   E GL   
Sbjct: 21  QVYKVGIYGWRKRCLYFFVLLLMILILVNLAMTIWILKVMNFTIDGMGNLRITEKGL--- 77

Query: 111 KQVSDMGVIHPLYKSTVGGR----------RNENLVITGNNQPIVFQQGTTKLSVE--NN 158
           K   D   + PLY   +  R          RN  + I  +   ++ Q  T   +VE    
Sbjct: 78  KLEGDSEFLQPLYAKEIQSRPGNALYFKSARNVTVNILNDQTKVLTQLITGPKAVEAYGK 137

Query: 159 KTSITSDIGMQFFDPRTQNILFSTDYETHEFHLPSGVKSLNVQKASTERITSNATSDLNI 218
           K  + +  G   F      ++   +       +     ++  +   T  + ++   +L +
Sbjct: 138 KFEVKTVSGKLLFSADNNEVVVGAE----RLRVLGAEGTVFPKSIETPNVRADPFKELRL 193

Query: 219 KVDGRAIV-RGNEGVFIMGKTIEFHMGGNMELKAENSIIL---NGSVMVSTT--RLPSSS 272
           +   R++V    +GV I  +       GNME      + L   +G + +     RLP   
Sbjct: 194 ESPTRSLVMEAPKGVEINAE------AGNMEATCRTELRLESKDGEIKLDAAKIRLPRLP 247

Query: 273 SGDQLGSGDWVR-YKLCMCADGTLFKVQVTSQNMGCQISDNPC 314
            G    +G   + +++C+CA+G LF  Q  + +  CQI+ + C
Sbjct: 248 HGSYTPTGTRQKVFEICVCANGRLFLSQAGAGST-CQINTSVC 289


>gi|27477101 delta-sarcoglycan isoform 2 [Homo sapiens]
          Length = 256

 Score = 37.4 bits (85), Expect = 0.018
 Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 3/80 (3%)

Query: 51  RLHKTGLRGRKGNLAICVIILLFILAVINLIITLVIWAVIRIGPNGCDSMEFHESGLLRF 110
           +++K G+ G +       ++LL IL ++NL +T+ I  V+    +G  ++   E GL   
Sbjct: 21  QVYKVGIYGWRKRCLYFFVLLLMILILVNLAMTIWILKVMNFTIDGMGNLRITEKGL--- 77

Query: 111 KQVSDMGVIHPLYKSTVGGR 130
           K   D   + PLY   +  R
Sbjct: 78  KLEGDSEFLQPLYAKEIQSR 97


>gi|93102379 low density lipoprotein-related protein 1B precursor
           [Homo sapiens]
          Length = 4599

 Score = 29.6 bits (65), Expect = 3.7
 Identities = 16/68 (23%), Positives = 31/68 (45%)

Query: 167 GMQFFDPRTQNILFSTDYETHEFHLPSGVKSLNVQKASTERITSNATSDLNIKVDGRAIV 226
           G++ +  RTQ  + S   E   + +P G   + +  +S +  T    +  N+  DGR+  
Sbjct: 458 GIRIYQKRTQPTVRSHACEVDPYGMPGGCSHICLLSSSYKTRTCRCRTGFNLGSDGRSCK 517

Query: 227 RGNEGVFI 234
           R    +F+
Sbjct: 518 RPKNELFL 525


>gi|222418615 integrin alpha 7 isoform 3 [Homo sapiens]
          Length = 1044

 Score = 29.3 bits (64), Expect = 4.8
 Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 2/83 (2%)

Query: 190 HLPSGVKSLNVQKASTER-ITSNATSDLNIKVD-GRAIVRGNEGVFIMGKTIEFHMGGNM 247
           HL  G      +K    R I   A S     +D G+ +VR  E  F+ G     H G  +
Sbjct: 143 HLDDGPYEAGGEKEQDPRLIPVPANSYFGFSIDSGKGLVRAEELSFVAGAPRANHKGAVV 202

Query: 248 ELKAENSIILNGSVMVSTTRLPS 270
            L+ +++  L   VM+S  RL S
Sbjct: 203 ILRKDSASRLVPEVMLSGERLTS 225


>gi|222418613 integrin alpha 7 isoform 1 precursor [Homo sapiens]
          Length = 1141

 Score = 29.3 bits (64), Expect = 4.8
 Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 2/83 (2%)

Query: 190 HLPSGVKSLNVQKASTER-ITSNATSDLNIKVD-GRAIVRGNEGVFIMGKTIEFHMGGNM 247
           HL  G      +K    R I   A S     +D G+ +VR  E  F+ G     H G  +
Sbjct: 240 HLDDGPYEAGGEKEQDPRLIPVPANSYFGFSIDSGKGLVRAEELSFVAGAPRANHKGAVV 299

Query: 248 ELKAENSIILNGSVMVSTTRLPS 270
            L+ +++  L   VM+S  RL S
Sbjct: 300 ILRKDSASRLVPEVMLSGERLTS 322


>gi|56237021 fibrillin 3 precursor [Homo sapiens]
          Length = 2809

 Score = 29.3 bits (64), Expect = 4.8
 Identities = 14/33 (42%), Positives = 17/33 (51%)

Query: 278 GSGDWVRYKLCMCADGTLFKVQVTSQNMGCQIS 310
           G G   +  LC CADGTL      S+  GC +S
Sbjct: 91  GEGFCSQPNLCTCADGTLAPSCGVSRGSGCSVS 123


>gi|28933465 syntaxin 12 [Homo sapiens]
          Length = 276

 Score = 29.3 bits (64), Expect = 4.8
 Identities = 13/42 (30%), Positives = 26/42 (61%), Gaps = 2/42 (4%)

Query: 50  DRLHKTGLRGRKGNLAICVIILLFILAVINLIITLVIWAVIR 91
           ++L +     +K    +C+++L  +L+VI LI+ L+IW V +
Sbjct: 235 EQLQRAAYYQKKSRKKMCILVL--VLSVIILILGLIIWLVYK 274


>gi|170932494 syntaxin 7 [Homo sapiens]
          Length = 261

 Score = 28.9 bits (63), Expect = 6.3
 Identities = 12/30 (40%), Positives = 20/30 (66%), Gaps = 2/30 (6%)

Query: 60  RKGNLAICVIILLFILAVINLIITLVIWAV 89
           RK    +C+IIL+ ++ V   II+L+IW +
Sbjct: 232 RKSRKTLCIIILILVIGV--AIISLIIWGL 259


>gi|63998898 Yeast Sps1/Ste20-related kinase 4 isoform 2 [Homo
           sapiens]
          Length = 510

 Score = 28.9 bits (63), Expect = 6.3
 Identities = 27/121 (22%), Positives = 51/121 (42%), Gaps = 18/121 (14%)

Query: 189 FHLPSGVKSLNVQKAST----------ERITSNATSDLNIKVDGRAIVRGNEGVFIMGKT 238
           F LP     LN+ K+ T          ++  S   S  ++K  GR+I R + G+ I  + 
Sbjct: 159 FLLPRSCLELNISKSVTREDAPHFLKEQQRKSEEFSTSHMKYSGRSIKRHSSGLRIYDRE 218

Query: 239 IEFHMGGNMELKAENSIILNGSVMVSTTRLPSSSSGDQLGSGDWVRYKLCMCADGTLFKV 298
            +F +    ++ +ENS+     ++         + G+ LG G +      + + G L  V
Sbjct: 219 EKFLISNEKKIFSENSLKSEEPIL--------WTKGEILGKGAYGTVYCGLTSQGQLIAV 270

Query: 299 Q 299
           +
Sbjct: 271 K 271


>gi|55749865 DEAD (Asp-Glu-Ala-Asp) box polypeptide 53 [Homo
           sapiens]
          Length = 631

 Score = 28.5 bits (62), Expect = 8.2
 Identities = 21/88 (23%), Positives = 36/88 (40%), Gaps = 4/88 (4%)

Query: 176 QNILFSTDYE----THEFHLPSGVKSLNVQKASTERITSNATSDLNIKVDGRAIVRGNEG 231
           QNI+ +T+ E    T EF          +   S + I  + +SD NI+      + GN  
Sbjct: 443 QNIIVTTEKEKRALTQEFVENMSPNDKVIMFVSQKHIADDLSSDFNIQGISAESLHGNSE 502

Query: 232 VFIMGKTIEFHMGGNMELKAENSIILNG 259
                + +E    GN+++     I+  G
Sbjct: 503 QSDQERAVEDFKSGNIKILITTDIVSRG 530


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.317    0.133    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,838,813
Number of Sequences: 37866
Number of extensions: 436577
Number of successful extensions: 1126
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1113
Number of HSP's gapped (non-prelim): 16
length of query: 318
length of database: 18,247,518
effective HSP length: 102
effective length of query: 216
effective length of database: 14,385,186
effective search space: 3107200176
effective search space used: 3107200176
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.