Search of human proteins with 4506749

Search of human proteins with 4506749

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|4506749 ribonucleoside-diphosphate reductase M1 chain [Homo
sapiens]
         (792 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|4506749 ribonucleoside-diphosphate reductase M1 chain [Homo s...  1605   0.0  
gi|78042577 MAP7 domain containing 1 [Homo sapiens]                    31   5.1  
gi|88953346 PREDICTED: Tripartite motif-containing protein 43-li...    30   6.7  
gi|31563330 A-kinase anchor protein 13 isoform 1 [Homo sapiens]        30   6.7  
gi|21493029 A-kinase anchor protein 13 isoform 2 [Homo sapiens]        30   6.7  
gi|4557365 Bloom syndrome protein [Homo sapiens]                       30   8.8  
gi|153251823 stromal protein associated with thymii and lymph no...    30   8.8  
gi|53828670 olfactory receptor, family 2, subfamily Y, member 1 ...    30   8.8  
gi|20270353 tripartite motif-containing 43 [Homo sapiens]              30   8.8  

>gi|4506749 ribonucleoside-diphosphate reductase M1 chain [Homo
           sapiens]
          Length = 792

 Score = 1605 bits (4157), Expect = 0.0
 Identities = 792/792 (100%), Positives = 792/792 (100%)

Query: 1   MHVIKRDGRQERVMFDKITSRIQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLA 60
           MHVIKRDGRQERVMFDKITSRIQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLA
Sbjct: 1   MHVIKRDGRQERVMFDKITSRIQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLA 60

Query: 61  AETAATLTTKHPDYAILAARIAVSNLHKETKKVFSDVMEDLYNYINPHNGKHSPMVAKST 120
           AETAATLTTKHPDYAILAARIAVSNLHKETKKVFSDVMEDLYNYINPHNGKHSPMVAKST
Sbjct: 61  AETAATLTTKHPDYAILAARIAVSNLHKETKKVFSDVMEDLYNYINPHNGKHSPMVAKST 120

Query: 121 LDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVGIHK 180
           LDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVGIHK
Sbjct: 121 LDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVGIHK 180

Query: 181 EDIDAAIETYNLLSERWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCAL 240
           EDIDAAIETYNLLSERWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCAL
Sbjct: 181 EDIDAAIETYNLLSERWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCAL 240

Query: 241 ISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIY 300
           ISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIY
Sbjct: 241 ISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIY 300

Query: 301 LEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLD 360
           LEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLD
Sbjct: 301 LEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLD 360

Query: 361 EVWGEEFEKLYASYEKQGRVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNL 420
           EVWGEEFEKLYASYEKQGRVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNL
Sbjct: 361 EVWGEEFEKLYASYEKQGRVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNL 420

Query: 421 GTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTSEHTYDFKKLAEVTKVVVRNLNKI 480
           GTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTSEHTYDFKKLAEVTKVVVRNLNKI
Sbjct: 421 GTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTSEHTYDFKKLAEVTKVVVRNLNKI 480

Query: 481 IDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQIFETIYYGAL 540
           IDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQIFETIYYGAL
Sbjct: 481 IDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQIFETIYYGAL 540

Query: 541 EASCDLAKEQGPYETYEGSPVSKGILQYDMWNVTPTDLWDWKVLKEKIAKYGIRNSLLIA 600
           EASCDLAKEQGPYETYEGSPVSKGILQYDMWNVTPTDLWDWKVLKEKIAKYGIRNSLLIA
Sbjct: 541 EASCDLAKEQGPYETYEGSPVSKGILQYDMWNVTPTDLWDWKVLKEKIAKYGIRNSLLIA 600

Query: 601 PMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLWHEEMKNQII 660
           PMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLWHEEMKNQII
Sbjct: 601 PMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLWHEEMKNQII 660

Query: 661 ACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNIHIAEPNYGKL 720
           ACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNIHIAEPNYGKL
Sbjct: 661 ACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNIHIAEPNYGKL 720

Query: 721 TSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNKEKLKDKEKVSKEEEEKERNTAAMVCS 780
           TSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNKEKLKDKEKVSKEEEEKERNTAAMVCS
Sbjct: 721 TSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNKEKLKDKEKVSKEEEEKERNTAAMVCS 780

Query: 781 LENRDECLMCGS 792
           LENRDECLMCGS
Sbjct: 781 LENRDECLMCGS 792


>gi|78042577 MAP7 domain containing 1 [Homo sapiens]
          Length = 841

 Score = 30.8 bits (68), Expect = 5.1
 Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 8/46 (17%)

Query: 739 LRTRPAANPIQFTLNKEKLKDKEKVSKEEEEKERNTAAMVCSLENR 784
           +R RP A+P+Q    K++ KDKE+    E EKE++  A   SL+ R
Sbjct: 403 VRRRPEASPVQ----KKEKKDKER----ENEKEKSALARERSLKKR 440


>gi|88953346 PREDICTED: Tripartite motif-containing protein 43-like
           protein 1 [Homo sapiens]
          Length = 446

 Score = 30.4 bits (67), Expect = 6.7
 Identities = 17/67 (25%), Positives = 36/67 (53%), Gaps = 8/67 (11%)

Query: 676 LKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTG 735
           LK++Y+ + E+  K  +++  + G  + +S+S+ +H+ +P   +LT+        G  TG
Sbjct: 226 LKEMYQELMEMCHKPEVELLQDLGDIVARSESVLLHMPQPVNPELTA--------GPITG 277

Query: 736 MYYLRTR 742
           + Y   R
Sbjct: 278 LVYRLNR 284


>gi|31563330 A-kinase anchor protein 13 isoform 1 [Homo sapiens]
          Length = 2817

 Score = 30.4 bits (67), Expect = 6.7
 Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 7/79 (8%)

Query: 701  FIDQSQSLNIHIAEPNYGKLT---SMHFYGWKQGLKTG--MYYLRTRPAANPIQFTLNKE 755
            F + S +L   I E NY  L    S     WK G K      Y++ + +++       KE
Sbjct: 1713 FHNTSANLTESITEENYNFLPHSPSKKDSEWKSGTKVSRTFSYIKNKMSSSKKSKEKEKE 1772

Query: 756  K--LKDKEKVSKEEEEKER 772
            K  +K+KEK SK++E+ ++
Sbjct: 1773 KDKIKEKEKDSKDKEKDKK 1791


>gi|21493029 A-kinase anchor protein 13 isoform 2 [Homo sapiens]
          Length = 2813

 Score = 30.4 bits (67), Expect = 6.7
 Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 7/79 (8%)

Query: 701  FIDQSQSLNIHIAEPNYGKLT---SMHFYGWKQGLKTG--MYYLRTRPAANPIQFTLNKE 755
            F + S +L   I E NY  L    S     WK G K      Y++ + +++       KE
Sbjct: 1709 FHNTSANLTESITEENYNFLPHSPSKKDSEWKSGTKVSRTFSYIKNKMSSSKKSKEKEKE 1768

Query: 756  K--LKDKEKVSKEEEEKER 772
            K  +K+KEK SK++E+ ++
Sbjct: 1769 KDKIKEKEKDSKDKEKDKK 1787


>gi|4557365 Bloom syndrome protein [Homo sapiens]
          Length = 1417

 Score = 30.0 bits (66), Expect = 8.8
 Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 8/73 (10%)

Query: 602 MPTASTAQILGNNESIEPYT----SNIYTRRVLSGEFQIVN-PH---LLKDLTERGLWHE 653
           +P +STAQ +  +ESI+ YT     N+ +R +    FQ ++ PH   ++K   ++   H 
Sbjct: 608 LPVSSTAQNINFSESIQNYTDKSAQNLASRNLKHERFQSLSFPHTKEMMKIFHKKFGLHN 667

Query: 654 EMKNQIIACNGSI 666
              NQ+ A N ++
Sbjct: 668 FRTNQLEAINAAL 680


>gi|153251823 stromal protein associated with thymii and lymph nodes
           [Homo sapiens]
          Length = 351

 Score = 30.0 bits (66), Expect = 8.8
 Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 9/66 (13%)

Query: 707 SLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNKEKLKDKEKVSKE 766
           ++++ I +P   +   +    WK+ LK           A+ + F   +++LK KEK  KE
Sbjct: 124 TISVPIGDPQSNRNPQLSSEAWKKELKE---------LASRVAFLTKEDELKKKEKEQKE 174

Query: 767 EEEKER 772
           E  +E+
Sbjct: 175 EPLREQ 180


>gi|53828670 olfactory receptor, family 2, subfamily Y, member 1
           [Homo sapiens]
          Length = 311

 Score = 30.0 bits (66), Expect = 8.8
 Identities = 13/42 (30%), Positives = 22/42 (52%)

Query: 717 YGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNKEKLK 758
           Y  L S+H Y  ++G    ++Y    P  NP+ +TL  + +K
Sbjct: 256 YTYLQSIHNYSEREGKFVALFYTIITPILNPLIYTLRNKDVK 297


>gi|20270353 tripartite motif-containing 43 [Homo sapiens]
          Length = 446

 Score = 30.0 bits (66), Expect = 8.8
 Identities = 17/67 (25%), Positives = 36/67 (53%), Gaps = 8/67 (11%)

Query: 676 LKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTG 735
           LK++Y+ + E+  K  +++  + G  + +S+S+ +H+ +P   +LT+        G  TG
Sbjct: 226 LKEMYQELMEMCHKPDVELLQDLGDIVARSESVLLHMPQPVNPELTA--------GPITG 277

Query: 736 MYYLRTR 742
           + Y   R
Sbjct: 278 LVYRLNR 284


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.318    0.134    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,723,146
Number of Sequences: 37866
Number of extensions: 1239246
Number of successful extensions: 4405
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 4389
Number of HSP's gapped (non-prelim): 16
length of query: 792
length of database: 18,247,518
effective HSP length: 110
effective length of query: 682
effective length of database: 14,082,258
effective search space: 9604099956
effective search space used: 9604099956
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 66 (30.0 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.