Search of human proteins with 4506727

Search of human proteins with 4506727

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|4506727 ribosomal protein S4, Y-linked 1 Y isoform [Homo
sapiens]
         (263 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|4506727 ribosomal protein S4, Y-linked 1 Y isoform [Homo sapi...   535   e-152
gi|88703062 ribosomal protein S4, Y-linked 2 [Homo sapiens]           509   e-145
gi|4506725 ribosomal protein S4, X-linked X isoform [Homo sapiens]    506   e-144
gi|114155133 dynein, axonemal, heavy chain 9 isoform 2 [Homo sap...    30   2.8  
gi|56788368 phosphatidylinositol-binding clathrin assembly prote...    29   3.7  
gi|56788366 phosphatidylinositol-binding clathrin assembly prote...    29   3.7  
gi|193804856 hypothetical protein LOC79742 isoform 2 [Homo sapiens]    28   6.2  
gi|193804854 hypothetical protein LOC79742 isoform 1 [Homo sapiens]    28   6.2  
gi|51479173 dynein, axonemal, heavy chain 11 [Homo sapiens]            28   6.2  
gi|34577063 adenylosuccinate synthase [Homo sapiens]                   28   8.2  

>gi|4506727 ribosomal protein S4, Y-linked 1 Y isoform [Homo
           sapiens]
          Length = 263

 Score =  535 bits (1378), Expect = e-152
 Identities = 263/263 (100%), Positives = 263/263 (100%)

Query: 1   MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDE 60
           MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDE
Sbjct: 1   MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDE 60

Query: 61  VKKICMQRFIKIDGKVRVDVTYPAGFMDVISIEKTGEHFRLVYDTKGRFAVHRITVEEAK 120
           VKKICMQRFIKIDGKVRVDVTYPAGFMDVISIEKTGEHFRLVYDTKGRFAVHRITVEEAK
Sbjct: 61  VKKICMQRFIKIDGKVRVDVTYPAGFMDVISIEKTGEHFRLVYDTKGRFAVHRITVEEAK 120

Query: 121 YKLCKVRKITVGVKGIPHLVTHDARTIRYPDPVIKVNDTVQIDLGTGKIINFIKFDTGNL 180
           YKLCKVRKITVGVKGIPHLVTHDARTIRYPDPVIKVNDTVQIDLGTGKIINFIKFDTGNL
Sbjct: 121 YKLCKVRKITVGVKGIPHLVTHDARTIRYPDPVIKVNDTVQIDLGTGKIINFIKFDTGNL 180

Query: 181 CMVIGGANLGRVGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGNGNKPWISLPR 240
           CMVIGGANLGRVGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGNGNKPWISLPR
Sbjct: 181 CMVIGGANLGRVGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGNGNKPWISLPR 240

Query: 241 GKGIRLTVAEERDKRLATKQSSG 263
           GKGIRLTVAEERDKRLATKQSSG
Sbjct: 241 GKGIRLTVAEERDKRLATKQSSG 263


>gi|88703062 ribosomal protein S4, Y-linked 2 [Homo sapiens]
          Length = 263

 Score =  509 bits (1311), Expect = e-145
 Identities = 247/263 (93%), Positives = 256/263 (97%)

Query: 1   MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDE 60
           MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDE
Sbjct: 1   MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDE 60

Query: 61  VKKICMQRFIKIDGKVRVDVTYPAGFMDVISIEKTGEHFRLVYDTKGRFAVHRITVEEAK 120
           VKKICMQ F+KIDGKVRVD+TYPAGF+DVISIEKTGEHFRLVY+TKG FAVHRITVEEAK
Sbjct: 61  VKKICMQHFLKIDGKVRVDITYPAGFIDVISIEKTGEHFRLVYNTKGCFAVHRITVEEAK 120

Query: 121 YKLCKVRKITVGVKGIPHLVTHDARTIRYPDPVIKVNDTVQIDLGTGKIINFIKFDTGNL 180
           YKLCKVRKITVG KGIPHLVTHDARTIRYPDP+IKVNDTVQIDLGTGKI +FIKFDTGN+
Sbjct: 121 YKLCKVRKITVGTKGIPHLVTHDARTIRYPDPLIKVNDTVQIDLGTGKITSFIKFDTGNV 180

Query: 181 CMVIGGANLGRVGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGNGNKPWISLPR 240
           CMVI GANLGRVGVITNRERHPGS DVVHVKDANGNSFATR+SNIFVIGNGNKPWISLPR
Sbjct: 181 CMVIAGANLGRVGVITNRERHPGSCDVVHVKDANGNSFATRISNIFVIGNGNKPWISLPR 240

Query: 241 GKGIRLTVAEERDKRLATKQSSG 263
           GKGIRLT+AEERDKRLA KQSSG
Sbjct: 241 GKGIRLTIAEERDKRLAAKQSSG 263


>gi|4506725 ribosomal protein S4, X-linked X isoform [Homo sapiens]
          Length = 263

 Score =  506 bits (1304), Expect = e-144
 Identities = 244/263 (92%), Positives = 254/263 (96%)

Query: 1   MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDE 60
           MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLI+FLRNRLKYALTGDE
Sbjct: 1   MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDE 60

Query: 61  VKKICMQRFIKIDGKVRVDVTYPAGFMDVISIEKTGEHFRLVYDTKGRFAVHRITVEEAK 120
           VKKICMQRFIKIDGKVR D+TYPAGFMDVISI+KTGE+FRL+YDTKGRFAVHRIT EEAK
Sbjct: 61  VKKICMQRFIKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAK 120

Query: 121 YKLCKVRKITVGVKGIPHLVTHDARTIRYPDPVIKVNDTVQIDLGTGKIINFIKFDTGNL 180
           YKLCKVRKI VG KGIPHLVTHDARTIRYPDP+IKVNDT+QIDL TGKI +FIKFDTGNL
Sbjct: 121 YKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNL 180

Query: 181 CMVIGGANLGRVGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGNGNKPWISLPR 240
           CMV GGANLGR+GVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIG GNKPWISLPR
Sbjct: 181 CMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPR 240

Query: 241 GKGIRLTVAEERDKRLATKQSSG 263
           GKGIRLT+AEERDKRLA KQSSG
Sbjct: 241 GKGIRLTIAEERDKRLAAKQSSG 263


>gi|114155133 dynein, axonemal, heavy chain 9 isoform 2 [Homo sapiens]
          Length = 4486

 Score = 29.6 bits (65), Expect = 2.8
 Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 3/89 (3%)

Query: 114  ITVEEAKYKLCKVRKITVGVKGIPHLVT---HDARTIRYPDPVIKVNDTVQIDLGTGKII 170
            +  E+A   +C + +I    +G   LV       +++      I   D  QI L  G  I
Sbjct: 2798 VLFEDAMRHVCHINRILESPRGNALLVGVGGSGKQSLTRLAAFISSMDVFQITLRKGYQI 2857

Query: 171  NFIKFDTGNLCMVIGGANLGRVGVITNRE 199
               K D  +LC+  G  NL  V ++T+ +
Sbjct: 2858 QDFKMDLASLCLKAGVKNLNTVFLMTDAQ 2886


>gi|56788368 phosphatidylinositol-binding clathrin assembly protein
           isoform 2 [Homo sapiens]
          Length = 610

 Score = 29.3 bits (64), Expect = 3.7
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 10/62 (16%)

Query: 199 ERHPGSFDVVHVKDANGNSFATRLSNIFVIGNGNKPWISLPRGKGIRLTVAEERDKRLAT 258
           E+H  S +   +KD+   S AT LSN           +S     G+ LT  +ER+K+ A 
Sbjct: 279 EQHLASLEGKKIKDSTAASRATTLSNA----------VSSLASTGLSLTKVDEREKQAAL 328

Query: 259 KQ 260
           ++
Sbjct: 329 EE 330


>gi|56788366 phosphatidylinositol-binding clathrin assembly protein
           isoform 1 [Homo sapiens]
          Length = 652

 Score = 29.3 bits (64), Expect = 3.7
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 10/62 (16%)

Query: 199 ERHPGSFDVVHVKDANGNSFATRLSNIFVIGNGNKPWISLPRGKGIRLTVAEERDKRLAT 258
           E+H  S +   +KD+   S AT LSN           +S     G+ LT  +ER+K+ A 
Sbjct: 279 EQHLASLEGKKIKDSTAASRATTLSNA----------VSSLASTGLSLTKVDEREKQAAL 328

Query: 259 KQ 260
           ++
Sbjct: 329 EE 330


>gi|193804856 hypothetical protein LOC79742 isoform 2 [Homo sapiens]
          Length = 182

 Score = 28.5 bits (62), Expect = 6.2
 Identities = 14/50 (28%), Positives = 24/50 (48%)

Query: 80  VTYPAGFMDVISIEKTGEHFRLVYDTKGRFAVHRITVEEAKYKLCKVRKI 129
           ++YPA + D   I +  E FRLV   +   +  RI    +  K C + ++
Sbjct: 95  LSYPANYSDDSKIWRPVEIFRLVSKYQNEISDRRICASASAPKTCSIERV 144


>gi|193804854 hypothetical protein LOC79742 isoform 1 [Homo sapiens]
          Length = 433

 Score = 28.5 bits (62), Expect = 6.2
 Identities = 14/50 (28%), Positives = 24/50 (48%)

Query: 80  VTYPAGFMDVISIEKTGEHFRLVYDTKGRFAVHRITVEEAKYKLCKVRKI 129
           ++YPA + D   I +  E FRLV   +   +  RI    +  K C + ++
Sbjct: 95  LSYPANYSDDSKIWRPVEIFRLVSKYQNEISDRRICASASAPKTCSIERV 144


>gi|51479173 dynein, axonemal, heavy chain 11 [Homo sapiens]
          Length = 4523

 Score = 28.5 bits (62), Expect = 6.2
 Identities = 24/102 (23%), Positives = 47/102 (46%), Gaps = 3/102 (2%)

Query: 110  AVHRITVEEAKYKLCKVRKITVGVKGIPHLV---THDARTIRYPDPVIKVNDTVQIDLGT 166
            A+H +  E+A   +C++ +I    +G   LV       +++      ++  +  QI L  
Sbjct: 2831 AMHLVLFEDAMQHVCRISRILRTPQGCALLVGVGGSGKQSLSRLAAYLRGLEVFQITLTE 2890

Query: 167  GKIINFIKFDTGNLCMVIGGANLGRVGVITNRERHPGSFDVV 208
            G  I  ++ D  NL +  G  N+  V ++T+ +    SF V+
Sbjct: 2891 GYGIQELRVDLANLYIRTGAKNMPTVFLLTDAQVLDESFLVL 2932


>gi|34577063 adenylosuccinate synthase [Homo sapiens]
          Length = 456

 Score = 28.1 bits (61), Expect = 8.2
 Identities = 22/86 (25%), Positives = 34/86 (39%), Gaps = 9/86 (10%)

Query: 163 DLGTGKIINFIKFDTGNLCMVIGGANLGRVGVITNRERH----PGSFDVVHVKDANGNSF 218
           D G GK+++ +  D   +C   GG N G   V+ + E      P      +V    GN  
Sbjct: 40  DEGKGKVVDLLAQDADIVCRCQGGNNAGHTVVVDSVEYDFHLLPSGIINPNVTAFIGNGV 99

Query: 219 ATRLSNIFVIGNGNKPWISLPRGKGI 244
              L  +F     N     + +GKG+
Sbjct: 100 VIHLPGLFEEAEKN-----VQKGKGL 120


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.323    0.141    0.427 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,235,069
Number of Sequences: 37866
Number of extensions: 459116
Number of successful extensions: 649
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 643
Number of HSP's gapped (non-prelim): 11
length of query: 263
length of database: 18,247,518
effective HSP length: 100
effective length of query: 163
effective length of database: 14,460,918
effective search space: 2357129634
effective search space used: 2357129634
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.