Search of human proteins with 4506691

Search of human proteins with 4506691

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|4506691 ribosomal protein S16 [Homo sapiens]
         (146 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|4506691 ribosomal protein S16 [Homo sapiens]                       291   2e-79
gi|169202389 PREDICTED: similar to mCG50504 [Homo sapiens]             95   2e-20
gi|33188463 mitochondrial ribosomal protein S9 [Homo sapiens]          52   1e-07
gi|34485727 NCK-associated protein 1-like [Homo sapiens]               32   0.25 
gi|38373673 synaptonemal complex protein 2 [Homo sapiens]              30   0.95 
gi|239756849 PREDICTED: hypothetical protein [Homo sapiens]            27   8.0  
gi|239751345 PREDICTED: hypothetical protein XP_002347810 [Homo ...    27   8.0  
gi|239745844 PREDICTED: hypothetical protein XP_002343563 [Homo ...    27   8.0  
gi|154350213 hypothetical protein LOC79591 [Homo sapiens]              27   8.0  

>gi|4506691 ribosomal protein S16 [Homo sapiens]
          Length = 146

 Score =  291 bits (744), Expect = 2e-79
 Identities = 146/146 (100%), Positives = 146/146 (100%)

Query: 1   MPSKGPLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGK 60
           MPSKGPLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGK
Sbjct: 1   MPSKGPLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGK 60

Query: 61  ERFAGVDIRVRVKGGGHVAQIYAIRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLL 120
           ERFAGVDIRVRVKGGGHVAQIYAIRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLL
Sbjct: 61  ERFAGVDIRVRVKGGGHVAQIYAIRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLL 120

Query: 121 VADPRRCESKKFGGPGARARYQKSYR 146
           VADPRRCESKKFGGPGARARYQKSYR
Sbjct: 121 VADPRRCESKKFGGPGARARYQKSYR 146


>gi|169202389 PREDICTED: similar to mCG50504 [Homo sapiens]
          Length = 189

 Score = 94.7 bits (234), Expect = 2e-20
 Identities = 51/73 (69%), Positives = 57/73 (78%)

Query: 58  LGKERFAGVDIRVRVKGGGHVAQIYAIRQSISKALVAYYQKYVDEASKKEIKDILIQYDR 117
           L  E FAGVDI V VK  GHVAQI AI+Q +SK+LVAY QKYV+EASKK+IKDILIQYD 
Sbjct: 23  LPMEWFAGVDICVYVKSSGHVAQICAIQQYVSKSLVAYCQKYVNEASKKQIKDILIQYDW 82

Query: 118 TLLVADPRRCESK 130
            LL+ADP    SK
Sbjct: 83  ILLIADPLAANSK 95


>gi|33188463 mitochondrial ribosomal protein S9 [Homo sapiens]
          Length = 396

 Score = 52.4 bits (124), Expect = 1e-07
 Identities = 44/130 (33%), Positives = 65/130 (50%), Gaps = 14/130 (10%)

Query: 14  GRKKTATAVAHC-KRGNGLIKVNGRPLEMIEPRTL-QYKLLEPVLLLGKERFAGVDIRVR 71
           G++KTA A A   K G+G IKVNG   ++  P T  + +L+ P   +  +R    D+   
Sbjct: 274 GKRKTAKAEAIVYKHGSGRIKVNGIDYQLYFPITQDREQLMFPFHFV--DRLGKHDVTCT 331

Query: 72  VKGGGHVAQIYAIRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPRRCESKK 131
           V GGG  AQ  AIR +++KAL ++  +           ++       LL  DPR  E KK
Sbjct: 332 VSGGGRSAQAGAIRLAMAKALCSFVTE----------DEVEWMRQAGLLTTDPRVRERKK 381

Query: 132 FGGPGARARY 141
            G  GAR ++
Sbjct: 382 PGQEGARRKF 391


>gi|34485727 NCK-associated protein 1-like [Homo sapiens]
          Length = 1127

 Score = 31.6 bits (70), Expect = 0.25
 Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 3/59 (5%)

Query: 43  EPRTLQYKLLEPVLLLGKERFAGVDIRVRVKGGGHVAQIYAIRQSISKALVAYYQKYVD 101
           +P  L  K +EP L    ++F  +D+R   +   H+  ++  +  I + L  YYQ +VD
Sbjct: 42  KPPFLLEKSMEPSLKYINKKFPNIDVRNSTQ---HLGPVHREKAEIIRFLTNYYQSFVD 97


>gi|38373673 synaptonemal complex protein 2 [Homo sapiens]
          Length = 1530

 Score = 29.6 bits (65), Expect = 0.95
 Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 3/64 (4%)

Query: 80  QIYAIRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPRRCESKKFGGPGARA 139
           QIY+I    SK L+    K   + SK+E K++L+ +D +L + +      K FG    R 
Sbjct: 339 QIYSIEVRESKKLLTIILKNTVKISKREGKELLLYFDASLEITN---VTQKIFGATKHRE 395

Query: 140 RYQK 143
             +K
Sbjct: 396 SIRK 399


>gi|239756849 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 329

 Score = 26.6 bits (57), Expect = 8.0
 Identities = 12/20 (60%), Positives = 16/20 (80%), Gaps = 1/20 (5%)

Query: 122 ADPRRC-ESKKFGGPGARAR 140
           A+PR C E++  GGPG+RAR
Sbjct: 116 ANPRLCREARACGGPGSRAR 135


>gi|239751345 PREDICTED: hypothetical protein XP_002347810 [Homo
           sapiens]
          Length = 329

 Score = 26.6 bits (57), Expect = 8.0
 Identities = 12/20 (60%), Positives = 16/20 (80%), Gaps = 1/20 (5%)

Query: 122 ADPRRC-ESKKFGGPGARAR 140
           A+PR C E++  GGPG+RAR
Sbjct: 116 ANPRLCREARACGGPGSRAR 135


>gi|239745844 PREDICTED: hypothetical protein XP_002343563 [Homo
           sapiens]
          Length = 329

 Score = 26.6 bits (57), Expect = 8.0
 Identities = 12/20 (60%), Positives = 16/20 (80%), Gaps = 1/20 (5%)

Query: 122 ADPRRC-ESKKFGGPGARAR 140
           A+PR C E++  GGPG+RAR
Sbjct: 116 ANPRLCREARACGGPGSRAR 135


>gi|154350213 hypothetical protein LOC79591 [Homo sapiens]
          Length = 689

 Score = 26.6 bits (57), Expect = 8.0
 Identities = 10/29 (34%), Positives = 18/29 (62%), Gaps = 1/29 (3%)

Query: 103 ASKKEIKD-ILIQYDRTLLVADPRRCESK 130
           ASKK +K+ +++ YD   +  DP +C  +
Sbjct: 16  ASKKPLKEKVVLMYDEIFMTEDPSKCSPR 44


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.320    0.138    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,314,376
Number of Sequences: 37866
Number of extensions: 196643
Number of successful extensions: 420
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 413
Number of HSP's gapped (non-prelim): 9
length of query: 146
length of database: 18,247,518
effective HSP length: 92
effective length of query: 54
effective length of database: 14,763,846
effective search space: 797247684
effective search space used: 797247684
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.