Search of human proteins with 4506685

Search of human proteins with 4506685

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|4506685 ribosomal protein S13 [Homo sapiens]
         (151 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|4506685 ribosomal protein S13 [Homo sapiens]                       300   2e-82
gi|116235446 LAG1 longevity assurance homolog 3 [Homo sapiens]         29   1.7  
gi|239750323 PREDICTED: hypothetical protein XP_002347363 [Homo ...    27   6.6  
gi|239744629 PREDICTED: hypothetical protein XP_002343226 [Homo ...    27   6.6  
gi|170784824 paired box 4 [Homo sapiens]                               27   6.6  
gi|75750484 cardiomyopathy associated 4 isoform 2 [Homo sapiens]       27   6.6  
gi|27477061 cardiomyopathy associated 4 isoform 1 [Homo sapiens]       27   6.6  
gi|47834348 minor histocompatibility antigen HA-1 [Homo sapiens]       27   8.6  
gi|13899259 THAP domain containing, apoptosis associated protein...    27   8.6  
gi|53828736 olfactory receptor, family 4, subfamily K, member 15...    27   8.6  

>gi|4506685 ribosomal protein S13 [Homo sapiens]
          Length = 151

 Score =  300 bits (769), Expect = 2e-82
 Identities = 151/151 (100%), Positives = 151/151 (100%)

Query: 1   MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGV 60
           MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGV
Sbjct: 1   MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGV 60

Query: 61  AQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIES 120
           AQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIES
Sbjct: 61  AQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIES 120

Query: 121 RIHRLARYYKTKRVLPPNWKYESSTASALVA 151
           RIHRLARYYKTKRVLPPNWKYESSTASALVA
Sbjct: 121 RIHRLARYYKTKRVLPPNWKYESSTASALVA 151


>gi|116235446 LAG1 longevity assurance homolog 3 [Homo sapiens]
          Length = 383

 Score = 28.9 bits (63), Expect = 1.7
 Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 4/79 (5%)

Query: 54  LRDSHGVAQ-VRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLE---RNRKDK 109
           L  S G+ + VR VT N +L           L  D+Y L KK     + +E   R+R+++
Sbjct: 64  LAKSFGIKETVRKVTPNTVLENFFKHSTRQPLQTDIYGLAKKCNLTERQVERWFRSRRNQ 123

Query: 110 DAKFRLILIESRIHRLARY 128
           +   RL   +    R A Y
Sbjct: 124 ERPSRLKKFQEACWRFAFY 142


>gi|239750323 PREDICTED: hypothetical protein XP_002347363 [Homo
          sapiens]
          Length = 104

 Score = 26.9 bits (58), Expect = 6.6
 Identities = 19/60 (31%), Positives = 24/60 (40%), Gaps = 16/60 (26%)

Query: 41 AKKGLTPSQIGVI----------------LRDSHGVAQVRFVTGNKILRILKSKGLAPDL 84
          A  GL P   GVI                L   HGVA V+ +T  K+L I +   +  DL
Sbjct: 17 ASAGLMPQNFGVIGLRHHFAIHYPAGGGLLDGLHGVAAVQGITKTKVLAIFQQAAVGGDL 76


>gi|239744629 PREDICTED: hypothetical protein XP_002343226 [Homo
          sapiens]
          Length = 104

 Score = 26.9 bits (58), Expect = 6.6
 Identities = 19/60 (31%), Positives = 24/60 (40%), Gaps = 16/60 (26%)

Query: 41 AKKGLTPSQIGVI----------------LRDSHGVAQVRFVTGNKILRILKSKGLAPDL 84
          A  GL P   GVI                L   HGVA V+ +T  K+L I +   +  DL
Sbjct: 17 ASAGLMPQNFGVIGLRHHFAIHYPAGGGLLDGLHGVAAVQGITKTKVLAIFQQAAVGGDL 76


>gi|170784824 paired box 4 [Homo sapiens]
          Length = 343

 Score = 26.9 bits (58), Expect = 6.6
 Identities = 12/28 (42%), Positives = 18/28 (64%)

Query: 32 DVKEQIYKLAKKGLTPSQIGVILRDSHG 59
          D ++QI +LA  G+ P  I  IL+ S+G
Sbjct: 17 DTRQQIVRLAVSGMRPCDISRILKVSNG 44


>gi|75750484 cardiomyopathy associated 4 isoform 2 [Homo sapiens]
          Length = 929

 Score = 26.9 bits (58), Expect = 6.6
 Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 5/62 (8%)

Query: 27  KLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGVAQVRFVTGNKILRILKSKGLAPDLPE 86
           K  S   ++Q   L  K +    + +     H  ++  +V  N + +ILK  G  PDLP 
Sbjct: 289 KKVSGQGRDQALNLLNKNVPRKDLAI-----HDNSRTIYVVDNGLRKILKVVGQVPDLPS 343

Query: 87  DL 88
            L
Sbjct: 344 CL 345


>gi|27477061 cardiomyopathy associated 4 isoform 1 [Homo sapiens]
          Length = 931

 Score = 26.9 bits (58), Expect = 6.6
 Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 5/62 (8%)

Query: 27  KLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGVAQVRFVTGNKILRILKSKGLAPDLPE 86
           K  S   ++Q   L  K +    + +     H  ++  +V  N + +ILK  G  PDLP 
Sbjct: 289 KKVSGQGRDQALNLLNKNVPRKDLAI-----HDNSRTIYVVDNGLRKILKVVGQVPDLPS 343

Query: 87  DL 88
            L
Sbjct: 344 CL 345


>gi|47834348 minor histocompatibility antigen HA-1 [Homo sapiens]
          Length = 1136

 Score = 26.6 bits (57), Expect = 8.6
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 3/47 (6%)

Query: 75  LKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIESR 121
           L ++G  PD+ ED+ HL+       + LE   K K+   R  L+E+R
Sbjct: 103 LPTEGAGPDVVEDISHLLADVARFAEGLE---KLKECVLRDDLLEAR 146


>gi|13899259 THAP domain containing, apoptosis associated protein 2
           [Homo sapiens]
          Length = 228

 Score = 26.6 bits (57), Expect = 8.6
 Identities = 17/56 (30%), Positives = 25/56 (44%)

Query: 76  KSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIESRIHRLARYYKT 131
           K+   +P  P +L   I     + +H    R   +AK R+I +E  I  L R  KT
Sbjct: 99  KNNSCSPAGPSNLKSNISSQQVLLEHSYAFRNPMEAKKRIIKLEKEIASLRRKMKT 154


>gi|53828736 olfactory receptor, family 4, subfamily K, member 15
           [Homo sapiens]
          Length = 348

 Score = 26.6 bits (57), Expect = 8.6
 Identities = 12/34 (35%), Positives = 20/34 (58%)

Query: 23  PTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRD 56
           P    L + +VK  + KL  + L PSQ+ V++R+
Sbjct: 308 PVIYTLRNKEVKAAMSKLKSRYLKPSQVSVVIRN 341


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.320    0.135    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,378,794
Number of Sequences: 37866
Number of extensions: 200683
Number of successful extensions: 429
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 423
Number of HSP's gapped (non-prelim): 10
length of query: 151
length of database: 18,247,518
effective HSP length: 93
effective length of query: 58
effective length of database: 14,725,980
effective search space: 854106840
effective search space used: 854106840
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.