Search of human proteins with 4505717

Search of human proteins with 4505717

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|4505717 peroxisomal biogenesis factor 11 alpha [Homo
sapiens]
         (247 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|4505717 peroxisomal biogenesis factor 11 alpha [Homo sapiens]      495   e-140
gi|4505719 peroxisomal biogenesis factor 11 beta [Homo sapiens]       200   8e-52
gi|18087833 peroxisomal biogenesis factor 11 gamma [Homo sapiens]      51   1e-06
gi|6912678 sperm associated antigen 6 isoform 1 [Homo sapiens]         33   0.18 
gi|27262641 sperm associated antigen 6 isoform 2 [Homo sapiens]        33   0.18 
gi|209969686 GRAM domain containing 1A isoform 2 [Homo sapiens]        28   7.4  
gi|92110010 GRAM domain containing 1A isoform 1 [Homo sapiens]         28   7.4  

>gi|4505717 peroxisomal biogenesis factor 11 alpha [Homo sapiens]
          Length = 247

 Score =  495 bits (1275), Expect = e-140
 Identities = 247/247 (100%), Positives = 247/247 (100%)

Query: 1   MDAFTRFTNQTQGRDRLFRATQYTCMLLRYLLEPKAGKEKVVMKLKKLESSVSTGRKWFR 60
           MDAFTRFTNQTQGRDRLFRATQYTCMLLRYLLEPKAGKEKVVMKLKKLESSVSTGRKWFR
Sbjct: 1   MDAFTRFTNQTQGRDRLFRATQYTCMLLRYLLEPKAGKEKVVMKLKKLESSVSTGRKWFR 60

Query: 61  LGNVVHAIQATEQSIHATDLVPRLCLTLANLNRVIYFICDTILWVRSVGLTSGINKEKWR 120
           LGNVVHAIQATEQSIHATDLVPRLCLTLANLNRVIYFICDTILWVRSVGLTSGINKEKWR
Sbjct: 61  LGNVVHAIQATEQSIHATDLVPRLCLTLANLNRVIYFICDTILWVRSVGLTSGINKEKWR 120

Query: 121 TRAAHHYYYSLLLSLVRDLYEISLQMKRVTCDRAKKEKSASQDPLWFSVAEEETEWLQSF 180
           TRAAHHYYYSLLLSLVRDLYEISLQMKRVTCDRAKKEKSASQDPLWFSVAEEETEWLQSF
Sbjct: 121 TRAAHHYYYSLLLSLVRDLYEISLQMKRVTCDRAKKEKSASQDPLWFSVAEEETEWLQSF 180

Query: 181 LLLLFRSLKQHPPLLLDTVKNLCDILNPLDQLGIYKSNPGIIGLGGLVSSIAGMITVAYP 240
           LLLLFRSLKQHPPLLLDTVKNLCDILNPLDQLGIYKSNPGIIGLGGLVSSIAGMITVAYP
Sbjct: 181 LLLLFRSLKQHPPLLLDTVKNLCDILNPLDQLGIYKSNPGIIGLGGLVSSIAGMITVAYP 240

Query: 241 QMKLKTR 247
           QMKLKTR
Sbjct: 241 QMKLKTR 247


>gi|4505719 peroxisomal biogenesis factor 11 beta [Homo sapiens]
          Length = 259

 Score =  200 bits (509), Expect = 8e-52
 Identities = 102/258 (39%), Positives = 162/258 (62%), Gaps = 13/258 (5%)

Query: 1   MDAFTRFTNQTQGRDRLFRATQYTCMLLRYLLEPKAGKEKVVMKLKKLESSVSTGRKWFR 60
           MDA+ RF+ Q+Q R+RL RA QY C LL + L+      ++  ++++LES +S GRK  R
Sbjct: 1   MDAWVRFSAQSQARERLCRAAQYACSLLGHALQRHGASPELQKQIRQLESHLSLGRKLLR 60

Query: 61  LGNVVHAIQATEQSIHATDLVPRLCLTLANLNRVIYFICDTILWVRSVGLTSGINKEKWR 120
           LGN   A+++ ++++H +D+V R C+T+++LNR +YF CD +LW    GL   +++EKW 
Sbjct: 61  LGNSADALESAKRAVHLSDVVLRFCITVSHLNRALYFACDNVLWAGKSGLAPRVDQEKWA 120

Query: 121 TRAAHHYYYSLLLSLVRDLYEISLQMKRVTCDRAKKEKSASQDPLWFSVA---------- 170
            R+  +Y +SL+++L RD YEI L M++ +   +++ K +       S            
Sbjct: 121 QRSFRYYLFSLIMNLSRDAYEIRLLMEQESSACSRRLKGSGGGVPGGSETGGLGGPGTPG 180

Query: 171 ---EEETEWLQSFLLLLFRSLKQHPPLLLDTVKNLCDILNPLDQLGIYKSNPGIIGLGGL 227
               +    L+  +LLL R L+ HPPLLLD V+N CD+  PLD+LG+++  PGI+GL GL
Sbjct: 181 GGLPQLALKLRLQVLLLARVLRGHPPLLLDVVRNACDLFIPLDKLGLWRCGPGIVGLCGL 240

Query: 228 VSSIAGMITVAYPQMKLK 245
           VSSI  ++T+ YP ++LK
Sbjct: 241 VSSILSILTLIYPWLRLK 258


>gi|18087833 peroxisomal biogenesis factor 11 gamma [Homo sapiens]
          Length = 241

 Score = 50.8 bits (120), Expect = 1e-06
 Identities = 58/236 (24%), Positives = 96/236 (40%), Gaps = 29/236 (12%)

Query: 12  QGRDRLFRATQYTCMLL-RYLLEPKAGKEKVVMKLKKLESSVSTGRKWFRLGNVVHAIQA 70
           +GRDRL R   Y C L+   L+E    + +V  +L  + + +S  R   RL + +     
Sbjct: 15  RGRDRLIRVLGYCCQLVGGVLVEQCPARSEVGTRLLVVSTQLSHCRTILRLFDDLAMFVY 74

Query: 71  TEQ---SIHATDLVPRLCLTLANLNRVIYFICDTILWVRSVGLTSGINKEKWRTRAAHHY 127
           T+Q        D   R    L NL   +Y+ C+ + W     +   ++  +W T +   +
Sbjct: 75  TKQYGLGAQEEDAFVRCVSVLGNLADQLYYPCEHVAWAADARVLH-VDSSRWWTLSTTLW 133

Query: 128 YYSLLLSLVRDLYEISLQMKRVTCDRAKKEKSASQDPLWFSVAEEETEWLQSFLLLLFRS 187
             SLLL + R L+ + L++++    R +   +    PL           +QS  L L   
Sbjct: 134 ALSLLLGVARSLWML-LKLRQ----RLRSPTAPFTSPLPRGKRRAMEAQMQSEALSL--- 185

Query: 188 LKQHPPLLLDTVKNLCDILN-----PLDQLGIYKSNPGIIGLGGLVSSIAGMITVA 238
                      + NL D+ N     P   L   +  P ++GL G +SSI  M   A
Sbjct: 186 -----------LSNLADLANAVHWLPRGVLWAGRFPPWLVGLMGTISSILSMYQAA 230


>gi|6912678 sperm associated antigen 6 isoform 1 [Homo sapiens]
          Length = 509

 Score = 33.5 bits (75), Expect = 0.18
 Identities = 26/108 (24%), Positives = 52/108 (48%), Gaps = 8/108 (7%)

Query: 145 QMKRVTCDRAKKEKSASQDPLWFSVAEEETEWLQSFLLLLFRSLKQHPPLLLDTVKNLCD 204
           Q+ + + D A+    A   P+  +  +++ E+++     L R + +H P L   V N   
Sbjct: 235 QVSKHSVDLAEMVVEAEIFPVVLTCLKDKDEYVKKNASTLIREIAKHTPELSQLVVNAGG 294

Query: 205 ILNPLDQLGIYKSN---PGIIGLGGLVS-----SIAGMITVAYPQMKL 244
           +   +D +G  K N   PGI+ LG + +     ++A +I+   PQ+ +
Sbjct: 295 VAAVIDCIGSCKGNTRLPGIMMLGYVAAHSENLAMAVIISKGVPQLSV 342


>gi|27262641 sperm associated antigen 6 isoform 2 [Homo sapiens]
          Length = 458

 Score = 33.5 bits (75), Expect = 0.18
 Identities = 26/108 (24%), Positives = 52/108 (48%), Gaps = 8/108 (7%)

Query: 145 QMKRVTCDRAKKEKSASQDPLWFSVAEEETEWLQSFLLLLFRSLKQHPPLLLDTVKNLCD 204
           Q+ + + D A+    A   P+  +  +++ E+++     L R + +H P L   V N   
Sbjct: 235 QVSKHSVDLAEMVVEAEIFPVVLTCLKDKDEYVKKNASTLIREIAKHTPELSQLVVNAGG 294

Query: 205 ILNPLDQLGIYKSN---PGIIGLGGLVS-----SIAGMITVAYPQMKL 244
           +   +D +G  K N   PGI+ LG + +     ++A +I+   PQ+ +
Sbjct: 295 VAAVIDCIGSCKGNTRLPGIMMLGYVAAHSENLAMAVIISKGVPQLSV 342


>gi|209969686 GRAM domain containing 1A isoform 2 [Homo sapiens]
          Length = 713

 Score = 28.1 bits (61), Expect = 7.4
 Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 9/52 (17%)

Query: 142 ISLQMKRVTCDRAKKEKSASQDPLWFSV-AEEETEWLQSF------LLLLFR 186
           IS+Q+K VTC   KKEK+A   P    +  E E  +  SF       LL+FR
Sbjct: 137 ISIQLKEVTC--LKKEKTAKLIPNAIQICTESEKHFFTSFGARDRCFLLIFR 186


>gi|92110010 GRAM domain containing 1A isoform 1 [Homo sapiens]
          Length = 724

 Score = 28.1 bits (61), Expect = 7.4
 Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 9/52 (17%)

Query: 142 ISLQMKRVTCDRAKKEKSASQDPLWFSV-AEEETEWLQSF------LLLLFR 186
           IS+Q+K VTC   KKEK+A   P    +  E E  +  SF       LL+FR
Sbjct: 144 ISIQLKEVTC--LKKEKTAKLIPNAIQICTESEKHFFTSFGARDRCFLLIFR 193


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.323    0.136    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,467,979
Number of Sequences: 37866
Number of extensions: 332320
Number of successful extensions: 709
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 702
Number of HSP's gapped (non-prelim): 8
length of query: 247
length of database: 18,247,518
effective HSP length: 100
effective length of query: 147
effective length of database: 14,460,918
effective search space: 2125754946
effective search space used: 2125754946
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.