Search of human proteins with 4505355

Search of human proteins with 4505355

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|4505355 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex,
2, 8kDa [Homo sapiens]
         (99 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|4505355 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 2...   199   5e-52
gi|28872732 mitochondrial ribosomal protein L43 isoform b [Homo ...    32   0.083
gi|28872738 mitochondrial ribosomal protein L43 isoform d [Homo ...    32   0.083
gi|28872736 mitochondrial ribosomal protein L43 isoform c [Homo ...    32   0.083
gi|28872734 mitochondrial ribosomal protein L43 isoform a [Homo ...    32   0.083
gi|24307873 zinc finger protein 651 [Homo sapiens]                     28   1.6  
gi|146229340 mutated in colorectal cancers isoform 1 [Homo sapiens]    26   6.0  
gi|4505129 mutated in colorectal cancers isoform 2 [Homo sapiens]      26   6.0  
gi|41349466 PR domain containing 11 [Homo sapiens]                     26   7.8  

>gi|4505355 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 2,
          8kDa [Homo sapiens]
          Length = 99

 Score =  199 bits (505), Expect = 5e-52
 Identities = 99/99 (100%), Positives = 99/99 (100%)

Query: 1  MAAAAASRGVGAKLGLREIRIHLCQRSPGSQGVRDFIEKRYVELKKANPDLPILIRECSD 60
          MAAAAASRGVGAKLGLREIRIHLCQRSPGSQGVRDFIEKRYVELKKANPDLPILIRECSD
Sbjct: 1  MAAAAASRGVGAKLGLREIRIHLCQRSPGSQGVRDFIEKRYVELKKANPDLPILIRECSD 60

Query: 61 VQPKLWARYAFGQETNVPLNNFSADQVTRALENVLSGKA 99
          VQPKLWARYAFGQETNVPLNNFSADQVTRALENVLSGKA
Sbjct: 61 VQPKLWARYAFGQETNVPLNNFSADQVTRALENVLSGKA 99


>gi|28872732 mitochondrial ribosomal protein L43 isoform b [Homo
           sapiens]
          Length = 215

 Score = 32.3 bits (72), Expect = 0.083
 Identities = 14/79 (17%), Positives = 38/79 (48%)

Query: 16  LREIRIHLCQRSPGSQGVRDFIEKRYVELKKANPDLPILIRECSDVQPKLWARYAFGQET 75
           L+ +   + +    S+G R+F+E+  ++  + NP + I +       P++ A Y  G   
Sbjct: 26  LQRLSFSVSRDGASSRGAREFVEREVIDFARRNPGVVIYVNSRPCCVPRVVAEYLNGAVR 85

Query: 76  NVPLNNFSADQVTRALENV 94
              ++  S ++++  ++ +
Sbjct: 86  EESIHCKSVEEISTLVQKL 104


>gi|28872738 mitochondrial ribosomal protein L43 isoform d [Homo
           sapiens]
          Length = 235

 Score = 32.3 bits (72), Expect = 0.083
 Identities = 14/79 (17%), Positives = 38/79 (48%)

Query: 16  LREIRIHLCQRSPGSQGVRDFIEKRYVELKKANPDLPILIRECSDVQPKLWARYAFGQET 75
           L+ +   + +    S+G R+F+E+  ++  + NP + I +       P++ A Y  G   
Sbjct: 26  LQRLSFSVSRDGASSRGAREFVEREVIDFARRNPGVVIYVNSRPCCVPRVVAEYLNGAVR 85

Query: 76  NVPLNNFSADQVTRALENV 94
              ++  S ++++  ++ +
Sbjct: 86  EESIHCKSVEEISTLVQKL 104


>gi|28872736 mitochondrial ribosomal protein L43 isoform c [Homo
           sapiens]
          Length = 202

 Score = 32.3 bits (72), Expect = 0.083
 Identities = 14/79 (17%), Positives = 38/79 (48%)

Query: 16  LREIRIHLCQRSPGSQGVRDFIEKRYVELKKANPDLPILIRECSDVQPKLWARYAFGQET 75
           L+ +   + +    S+G R+F+E+  ++  + NP + I +       P++ A Y  G   
Sbjct: 26  LQRLSFSVSRDGASSRGAREFVEREVIDFARRNPGVVIYVNSRPCCVPRVVAEYLNGAVR 85

Query: 76  NVPLNNFSADQVTRALENV 94
              ++  S ++++  ++ +
Sbjct: 86  EESIHCKSVEEISTLVQKL 104


>gi|28872734 mitochondrial ribosomal protein L43 isoform a [Homo
           sapiens]
          Length = 159

 Score = 32.3 bits (72), Expect = 0.083
 Identities = 14/79 (17%), Positives = 38/79 (48%)

Query: 16  LREIRIHLCQRSPGSQGVRDFIEKRYVELKKANPDLPILIRECSDVQPKLWARYAFGQET 75
           L+ +   + +    S+G R+F+E+  ++  + NP + I +       P++ A Y  G   
Sbjct: 26  LQRLSFSVSRDGASSRGAREFVEREVIDFARRNPGVVIYVNSRPCCVPRVVAEYLNGAVR 85

Query: 76  NVPLNNFSADQVTRALENV 94
              ++  S ++++  ++ +
Sbjct: 86  EESIHCKSVEEISTLVQKL 104


>gi|24307873 zinc finger protein 651 [Homo sapiens]
          Length = 371

 Score = 28.1 bits (61), Expect = 1.6
 Identities = 14/34 (41%), Positives = 21/34 (61%)

Query: 6  ASRGVGAKLGLREIRIHLCQRSPGSQGVRDFIEK 39
          A+ G+GAK+ L E + H CQ+ P     R ++EK
Sbjct: 44 ATDGLGAKVKLEEKQHHPCQKCPRVFNNRWYLEK 77


>gi|146229340 mutated in colorectal cancers isoform 1 [Homo sapiens]
          Length = 1019

 Score = 26.2 bits (56), Expect = 6.0
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 3/49 (6%)

Query: 21  IHLCQRSPGSQGVRDFIEKRYVELKKANPDLPILIRECSDVQPKLWARY 69
           + L +R   ++  RD +EK+   L KA  +   L+RE  DVQ +   RY
Sbjct: 223 VELNKRLQQTERERDLLEKK---LAKAQCEQSHLMREHEDVQERTTLRY 268


>gi|4505129 mutated in colorectal cancers isoform 2 [Homo sapiens]
          Length = 829

 Score = 26.2 bits (56), Expect = 6.0
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 3/49 (6%)

Query: 21 IHLCQRSPGSQGVRDFIEKRYVELKKANPDLPILIRECSDVQPKLWARY 69
          + L +R   ++  RD +EK+   L KA  +   L+RE  DVQ +   RY
Sbjct: 33 VELNKRLQQTERERDLLEKK---LAKAQCEQSHLMREHEDVQERTTLRY 78


>gi|41349466 PR domain containing 11 [Homo sapiens]
          Length = 511

 Score = 25.8 bits (55), Expect = 7.8
 Identities = 11/39 (28%), Positives = 20/39 (51%)

Query: 53  ILIRECSDVQPKLWARYAFGQETNVPLNNFSADQVTRAL 91
           I  R C D++P  W R  + ++    L++ S + + R L
Sbjct: 241 IYFRACRDIRPGEWLRVWYSEDYMKRLHSMSQETIHRNL 279


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.319    0.134    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,710,579
Number of Sequences: 37866
Number of extensions: 145460
Number of successful extensions: 286
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 279
Number of HSP's gapped (non-prelim): 9
length of query: 99
length of database: 18,247,518
effective HSP length: 70
effective length of query: 29
effective length of database: 15,596,898
effective search space: 452310042
effective search space used: 452310042
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.