Search of human proteins with 4504677

Search of human proteins with 4504677

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|4504677 interleukin 7 precursor [Homo sapiens]
         (177 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|4504677 interleukin 7 precursor [Homo sapiens]                     359   e-100
gi|21361370 brain glycogen phosphorylase [Homo sapiens]                30   1.1  
gi|126116589 fibrocystin L [Homo sapiens]                              29   2.4  
gi|10092619 nuclear factor of kappa light polypeptide gene enhan...    28   4.2  
gi|171543895 ataxin 2 [Homo sapiens]                                   28   4.2  
gi|27477111 step II splicing factor SLU7 [Homo sapiens]                27   7.1  
gi|50593010 bisphosphoglycerate mutase 2 [Homo sapiens]                27   9.3  
gi|55770888 early endosome antigen 1, 162kD [Homo sapiens]             27   9.3  
gi|41327691 kinesin-like motor protein C20orf23 [Homo sapiens]         27   9.3  

>gi|4504677 interleukin 7 precursor [Homo sapiens]
          Length = 177

 Score =  359 bits (922), Expect = e-100
 Identities = 177/177 (100%), Positives = 177/177 (100%)

Query: 1   MFHVSFRYIFGLPPLILVLLPVASSDCDIEGKDGKQYESVLMVSIDQLLDSMKEIGSNCL 60
           MFHVSFRYIFGLPPLILVLLPVASSDCDIEGKDGKQYESVLMVSIDQLLDSMKEIGSNCL
Sbjct: 1   MFHVSFRYIFGLPPLILVLLPVASSDCDIEGKDGKQYESVLMVSIDQLLDSMKEIGSNCL 60

Query: 61  NNEFNFFKRHICDANKEGMFLFRAARKLRQFLKMNSTGDFDLHLLKVSEGTTILLNCTGQ 120
           NNEFNFFKRHICDANKEGMFLFRAARKLRQFLKMNSTGDFDLHLLKVSEGTTILLNCTGQ
Sbjct: 61  NNEFNFFKRHICDANKEGMFLFRAARKLRQFLKMNSTGDFDLHLLKVSEGTTILLNCTGQ 120

Query: 121 VKGRKPAALGEAQPTKSLEENKSLKEQKKLNDLCFLKRLLQEIKTCWNKILMGTKEH 177
           VKGRKPAALGEAQPTKSLEENKSLKEQKKLNDLCFLKRLLQEIKTCWNKILMGTKEH
Sbjct: 121 VKGRKPAALGEAQPTKSLEENKSLKEQKKLNDLCFLKRLLQEIKTCWNKILMGTKEH 177


>gi|21361370 brain glycogen phosphorylase [Homo sapiens]
          Length = 843

 Score = 30.0 bits (66), Expect = 1.1
 Identities = 15/51 (29%), Positives = 25/51 (49%)

Query: 67  FKRHICDANKEGMFLFRAARKLRQFLKMNSTGDFDLHLLKVSEGTTILLNC 117
           F R +    +E    F A  +    +K+N +  FD+H+ ++ E    LLNC
Sbjct: 531 FIRDVAKVKQENKLKFSAFLEKEYKVKINPSSMFDVHVKRIHEYKRQLLNC 581


>gi|126116589 fibrocystin L [Homo sapiens]
          Length = 4243

 Score = 28.9 bits (63), Expect = 2.4
 Identities = 13/31 (41%), Positives = 20/31 (64%)

Query: 94  MNSTGDFDLHLLKVSEGTTILLNCTGQVKGR 124
           +++ GDFDL   +V EG  + L+ T Q KG+
Sbjct: 601 ISTRGDFDLLGYEVVEGNNVTLDITEQTKGK 631


>gi|10092619 nuclear factor of kappa light polypeptide gene enhancer
           in B-cells inhibitor, alpha [Homo sapiens]
          Length = 317

 Score = 28.1 bits (61), Expect = 4.2
 Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 9/92 (9%)

Query: 32  KDGKQYESVLMVSIDQLLDSMKEIGSNCLNNEFNFFKRHICDANKEGMFLFRAARKLRQF 91
           +DG + E +L    D  LDSMK+        E+    + + +   E   + R +   +Q 
Sbjct: 17  RDGLKKERLLDDRHDSGLDSMKD-------EEYEQMVKELQEIRLEPQEVPRGSEPWKQ- 68

Query: 92  LKMNSTGDFDLHLLKVSEGTTILLNCTGQVKG 123
            ++   GD  LHL  + E   + +    QVKG
Sbjct: 69  -QLTEDGDSFLHLAIIHEEKALTMEVIRQVKG 99


>gi|171543895 ataxin 2 [Homo sapiens]
          Length = 1313

 Score = 28.1 bits (61), Expect = 4.2
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 3/54 (5%)

Query: 4   VSFRYIFGLPPLILVLLPVASSDCDIEGKDGKQYESVLMV---SIDQLLDSMKE 54
           +SF  I+    ++ +L  V  S C+++ K+G  YE V        D +LD+  E
Sbjct: 257 ISFDGIYANMRMVHILTSVVGSKCEVQVKNGGIYEGVFKTYSPKCDLVLDAAHE 310


>gi|27477111 step II splicing factor SLU7 [Homo sapiens]
          Length = 586

 Score = 27.3 bits (59), Expect = 7.1
 Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 4/74 (5%)

Query: 76  KEGMFLFRAARKLRQFLKMNSTGDFDLHLLKVSEGTTILLNCTGQVKGRKPAALGEAQPT 135
           KEG + ++       F     TG+    ++   E   I+   TG+   +KP  L E    
Sbjct: 437 KEGRWGYKCCHSF--FKYSYCTGEAGKEIVNSEE--CIINEITGEESVKKPQTLMELHQE 492

Query: 136 KSLEENKSLKEQKK 149
           K  EE K  K++KK
Sbjct: 493 KLKEEKKKKKKKKK 506


>gi|50593010 bisphosphoglycerate mutase 2 [Homo sapiens]
          Length = 253

 Score = 26.9 bits (58), Expect = 9.3
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)

Query: 127 AALGEAQPTKSLEENKSLKEQKKLNDLCFLKRLLQEIKTCWNKILMGTKE 176
           A L E    ++    K++K+ K   D+C+   L + I+T W  IL GT +
Sbjct: 28  AELSEKGTEEAKRGAKAIKDAKMEFDICYTSVLKRAIRTLW-AILDGTDQ 76


>gi|55770888 early endosome antigen 1, 162kD [Homo sapiens]
          Length = 1411

 Score = 26.9 bits (58), Expect = 9.3
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 3/46 (6%)

Query: 123  GRKPAALGEAQPTKSLEENKSLKEQKKL---NDLCFLKRLLQEIKT 165
            GR+   L   Q  KS+EE  SL ++  +   N +    +L+QE+KT
Sbjct: 1037 GRESELLATRQDLKSVEEKLSLAQEDLISNRNQIGNQNKLIQELKT 1082


>gi|41327691 kinesin-like motor protein C20orf23 [Homo sapiens]
          Length = 1317

 Score = 26.9 bits (58), Expect = 9.3
 Identities = 27/99 (27%), Positives = 44/99 (44%), Gaps = 13/99 (13%)

Query: 76  KEGMFLF---RAARKLRQFLKMNSTGDFDLHLLKVSEGTTILLNCTGQVKGRKPAALGEA 132
           +  MF F   + A KLR+  K      F L +  +S+    L      V    P    E 
Sbjct: 545 RTNMFRFNHPKEAAKLREKRKSGLLSSFSLSMTDLSKSRENL----SAVMLYNPGLEFER 600

Query: 133 QPTKSLEENKSLK------EQKKLNDLCFLKRLLQEIKT 165
           Q  + LE+ +S +      E+K+ +D   L+R+ QE++T
Sbjct: 601 QQREELEKLESKRKLIEEMEEKQKSDKAELERMQQEVET 639


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.322    0.138    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,246,030
Number of Sequences: 37866
Number of extensions: 240574
Number of successful extensions: 748
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 743
Number of HSP's gapped (non-prelim): 9
length of query: 177
length of database: 18,247,518
effective HSP length: 95
effective length of query: 82
effective length of database: 14,650,248
effective search space: 1201320336
effective search space used: 1201320336
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.