BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|4503971 GDP dissociation inhibitor 1 [Homo sapiens] (447 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|4503971 GDP dissociation inhibitor 1 [Homo sapiens] 908 0.0 gi|6598323 GDP dissociation inhibitor 2 isoform 1 [Homo sapiens] 802 0.0 gi|169646441 GDP dissociation inhibitor 2 isoform 2 [Homo sapiens] 699 0.0 gi|53832014 choroideremia-like Rab escort protein 2 [Homo sapiens] 121 1e-27 gi|9966761 choroideremia isoform a [Homo sapiens] 110 3e-24 gi|224028271 choroideremia isoform b [Homo sapiens] 51 2e-06 gi|19923312 v-myc myelocytomatosis viral related oncogene, neuro... 34 0.31 gi|156142199 euchromatic histone-lysine N-methyltransferase 2 is... 32 0.90 gi|156142197 euchromatic histone-lysine N-methyltransferase 2 is... 32 0.90 gi|112293277 DnaJ (Hsp40) homolog, subfamily C, member 8 [Homo s... 31 2.6 gi|203098013 all-trans-13,14-dihydroretinol saturase [Homo sapiens] 30 5.8 gi|239757875 PREDICTED: similar to L-myc-2 protein, partial [Hom... 29 9.9 >gi|4503971 GDP dissociation inhibitor 1 [Homo sapiens] Length = 447 Score = 908 bits (2347), Expect = 0.0 Identities = 447/447 (100%), Positives = 447/447 (100%) Query: 1 MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLE 60 MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLE Sbjct: 1 MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLE 60 Query: 61 GPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVP 120 GPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVP Sbjct: 61 GPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVP 120 Query: 121 STETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQTTSMRDVYRKFDLGQD 180 STETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQTTSMRDVYRKFDLGQD Sbjct: 121 STETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQTTSMRDVYRKFDLGQD 180 Query: 181 VIDFTGHALALYRTDDYLDQPCLETVNRIKLYSESLARYGKSPYLYPLYGLGELPQGFAR 240 VIDFTGHALALYRTDDYLDQPCLETVNRIKLYSESLARYGKSPYLYPLYGLGELPQGFAR Sbjct: 181 VIDFTGHALALYRTDDYLDQPCLETVNRIKLYSESLARYGKSPYLYPLYGLGELPQGFAR 240 Query: 241 LSAIYGGTYMLNKPVDDIIMENGKVVGVKSEGEVARCKQLICDPSYIPDRVRKAGQVIRI 300 LSAIYGGTYMLNKPVDDIIMENGKVVGVKSEGEVARCKQLICDPSYIPDRVRKAGQVIRI Sbjct: 241 LSAIYGGTYMLNKPVDDIIMENGKVVGVKSEGEVARCKQLICDPSYIPDRVRKAGQVIRI 300 Query: 301 ICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVETT 360 ICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVETT Sbjct: 301 ICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVETT 360 Query: 361 DPEKEVEPALELLEPIDQKFVAISDLYEPIDDGCESQVFCSCSYDATTHFETTCNDIKDI 420 DPEKEVEPALELLEPIDQKFVAISDLYEPIDDGCESQVFCSCSYDATTHFETTCNDIKDI Sbjct: 361 DPEKEVEPALELLEPIDQKFVAISDLYEPIDDGCESQVFCSCSYDATTHFETTCNDIKDI 420 Query: 421 YKRMAGTAFDFENMKRKQNDVFGEAEQ 447 YKRMAGTAFDFENMKRKQNDVFGEAEQ Sbjct: 421 YKRMAGTAFDFENMKRKQNDVFGEAEQ 447 >gi|6598323 GDP dissociation inhibitor 2 isoform 1 [Homo sapiens] Length = 445 Score = 802 bits (2071), Expect = 0.0 Identities = 384/444 (86%), Positives = 420/444 (94%) Query: 1 MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLE 60 M+EEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGES+SITPLE+LYKRF++ Sbjct: 1 MNEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESASITPLEDLYKRFKIPG 60 Query: 61 GPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVP 120 PPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKV EGSFVYKGGKIYKVP Sbjct: 61 SPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVTEGSFVYKGGKIYKVP 120 Query: 121 STETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQTTSMRDVYRKFDLGQD 180 STE EALAS+LMG+FEKRRFRKFLV+VANFDE DP+TFEG+DP+ T+MRDVY+KFDLGQD Sbjct: 121 STEAEALASSLMGLFEKRRFRKFLVYVANFDEKDPRTFEGIDPKKTTMRDVYKKFDLGQD 180 Query: 181 VIDFTGHALALYRTDDYLDQPCLETVNRIKLYSESLARYGKSPYLYPLYGLGELPQGFAR 240 VIDFTGHALALYRTDDYLDQPC ET+NRIKLYSESLARYGKSPYLYPLYGLGELPQGFAR Sbjct: 181 VIDFTGHALALYRTDDYLDQPCYETINRIKLYSESLARYGKSPYLYPLYGLGELPQGFAR 240 Query: 241 LSAIYGGTYMLNKPVDDIIMENGKVVGVKSEGEVARCKQLICDPSYIPDRVRKAGQVIRI 300 LSAIYGGTYMLNKP+++II++NGKV+GVKSEGE+ARCKQLICDPSY+ DRV K GQVIR+ Sbjct: 241 LSAIYGGTYMLNKPIEEIIVQNGKVIGVKSEGEIARCKQLICDPSYVKDRVEKVGQVIRV 300 Query: 301 ICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVETT 360 ICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMIS+AHNVAAQGKYIAI STTVET Sbjct: 301 ICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISFAHNVAAQGKYIAIVSTTVETK 360 Query: 361 DPEKEVEPALELLEPIDQKFVAISDLYEPIDDGCESQVFCSCSYDATTHFETTCNDIKDI 420 +PEKE+ PALELLEPI+QKFV+ISDL P D G ESQ+F S +YDATTHFETTC+DIK+I Sbjct: 361 EPEKEIRPALELLEPIEQKFVSISDLLVPKDLGTESQIFISRTYDATTHFETTCDDIKNI 420 Query: 421 YKRMAGTAFDFENMKRKQNDVFGE 444 YKRM G+ FDFE MKRK+ND++GE Sbjct: 421 YKRMTGSEFDFEEMKRKKNDIYGE 444 >gi|169646441 GDP dissociation inhibitor 2 isoform 2 [Homo sapiens] Length = 400 Score = 699 bits (1804), Expect = 0.0 Identities = 342/444 (77%), Positives = 377/444 (84%), Gaps = 45/444 (10%) Query: 1 MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLE 60 M+EEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGES+SITPLE+LYKRF++ Sbjct: 1 MNEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESASITPLEDLYKRFKIPG 60 Query: 61 GPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVP 120 PPESMGRGRDWNVDLIPKFLMANG Sbjct: 61 SPPESMGRGRDWNVDLIPKFLMANG----------------------------------- 85 Query: 121 STETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQTTSMRDVYRKFDLGQD 180 LMG+FEKRRFRKFLV+VANFDE DP+TFEG+DP+ T+MRDVY+KFDLGQD Sbjct: 86 ----------LMGLFEKRRFRKFLVYVANFDEKDPRTFEGIDPKKTTMRDVYKKFDLGQD 135 Query: 181 VIDFTGHALALYRTDDYLDQPCLETVNRIKLYSESLARYGKSPYLYPLYGLGELPQGFAR 240 VIDFTGHALALYRTDDYLDQPC ET+NRIKLYSESLARYGKSPYLYPLYGLGELPQGFAR Sbjct: 136 VIDFTGHALALYRTDDYLDQPCYETINRIKLYSESLARYGKSPYLYPLYGLGELPQGFAR 195 Query: 241 LSAIYGGTYMLNKPVDDIIMENGKVVGVKSEGEVARCKQLICDPSYIPDRVRKAGQVIRI 300 LSAIYGGTYMLNKP+++II++NGKV+GVKSEGE+ARCKQLICDPSY+ DRV K GQVIR+ Sbjct: 196 LSAIYGGTYMLNKPIEEIIVQNGKVIGVKSEGEIARCKQLICDPSYVKDRVEKVGQVIRV 255 Query: 301 ICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVETT 360 ICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMIS+AHNVAAQGKYIAI STTVET Sbjct: 256 ICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISFAHNVAAQGKYIAIVSTTVETK 315 Query: 361 DPEKEVEPALELLEPIDQKFVAISDLYEPIDDGCESQVFCSCSYDATTHFETTCNDIKDI 420 +PEKE+ PALELLEPI+QKFV+ISDL P D G ESQ+F S +YDATTHFETTC+DIK+I Sbjct: 316 EPEKEIRPALELLEPIEQKFVSISDLLVPKDLGTESQIFISRTYDATTHFETTCDDIKNI 375 Query: 421 YKRMAGTAFDFENMKRKQNDVFGE 444 YKRM G+ FDFE MKRK+ND++GE Sbjct: 376 YKRMTGSEFDFEEMKRKKNDIYGE 399 >gi|53832014 choroideremia-like Rab escort protein 2 [Homo sapiens] Length = 656 Score = 121 bits (303), Expect = 1e-27 Identities = 74/261 (28%), Positives = 136/261 (52%), Gaps = 13/261 (4%) Query: 69 GRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVPSTETEALA 128 GR +N+DL+ K L + G L+ +L+ ++V+RY++FK V ++ GK+ +VP + + Sbjct: 226 GRRFNIDLVSKLLYSQGLLIDLLIKSDVSRYVEFKNVTRILAFREGKVEQVPCSRADVFN 285 Query: 129 SNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQTTSMRDVYRKFDLGQDVIDFTGHA 188 S + M EKR KFL F ++++ P ++ + S + + L ++ F H+ Sbjct: 286 SKELTMVEKRMLMKFLTFCLEYEQH-PDEYQAF--RQCSFSEYLKTKKLTPNLQHFVLHS 342 Query: 189 LALYRTDDYLDQPCLETVNRIKLYSESLARYGKSPYLYPLYGLGELPQGFARLSAIYGGT 248 +A+ ++ +N K + + L R+G +P+L+PLYG GE+PQGF R+ A++GG Sbjct: 343 IAMTSESSC---TTIDGLNATKNFLQCLGRFGNTPFLFPLYGQGEIPQGFCRMCAVFGGI 399 Query: 249 YMLNKPVDDIIM--ENGKVVGVKSE-GEVARCKQLICDPSYIPDRV---RKAGQVIRIIC 302 Y L V ++ E+G+ + G+ K I + SY+ + + Q+ R + Sbjct: 400 YCLRHKVQCFVVDKESGRCKAIIDHFGQRINAKYFIVEDSYLSEETCSNVQYKQISRAVL 459 Query: 303 ILSHPIKNTN-DANSCQIIIP 322 I I T+ D + +I+P Sbjct: 460 ITDQSILKTDLDQQTSILIVP 480 Score = 50.1 bits (118), Expect = 4e-06 Identities = 21/44 (47%), Positives = 32/44 (72%) Query: 4 EYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSIT 47 E+DV+++GTGL E IL+ S +G++VLH+D YYGG +S + Sbjct: 8 EFDVVIIGTGLPESILAAACSRSGQRVLHIDSRSYYGGNWASFS 51 >gi|9966761 choroideremia isoform a [Homo sapiens] Length = 653 Score = 110 bits (275), Expect = 3e-24 Identities = 82/325 (25%), Positives = 151/325 (46%), Gaps = 21/325 (6%) Query: 69 GRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVPSTETEALA 128 GR +N+DL+ K L + G L+ +L+ + V+RY +FK + ++ G++ +VP + + Sbjct: 224 GRRFNIDLVSKLLYSRGLLIDLLIKSNVSRYAEFKNITRILAFREGRVEQVPCSRADVFN 283 Query: 129 SNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQTTSMRDVYRKFDLGQDVIDFTGHA 188 S + M EKR KFL F + E P ++G + T + + L ++ H+ Sbjct: 284 SKQLTMVEKRMLMKFLTFCMEY-EKYPDEYKGYEEIT--FYEYLKTQKLTPNLQYIVMHS 340 Query: 189 LALYRTDDYLDQPCLETVNRIKLYSESLARYGKSPYLYPLYGLGELPQGFARLSAIYGGT 248 +A+ ++ + K + L RYG +P+L+PLYG GELPQ F R+ A++GG Sbjct: 341 IAM---TSETASSTIDGLKATKNFLHCLGRYGNTPFLFPLYGQGELPQCFCRMCAVFGGI 397 Query: 249 YMLNKPVDDIIM--ENGKVVGVKSE-GEVARCKQLICDPSYIPDRV---RKAGQVIRIIC 302 Y L V +++ E+ K + + G+ + + + SY P+ + + Q+ R + Sbjct: 398 YCLRHSVQCLVVDKESRKCKAIIDQFGQRIISEHFLVEDSYFPENMCSRVQYRQISRAVL 457 Query: 303 ILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVETTDP 362 I + T+ I+ + + V + + +G Y+ + T T Sbjct: 458 ITDRSVLKTDSDQQISILTVPAEEPGTFAVRVIELCSSTMTCMKGTYLVHLTCTSSKT-- 515 Query: 363 EKEVEPALELLEPIDQK-FVAISDL 386 A E LE + QK FV +++ Sbjct: 516 ------AREDLESVVQKLFVPYTEM 534 Score = 50.8 bits (120), Expect = 2e-06 Identities = 22/47 (46%), Positives = 33/47 (70%) Query: 1 MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSIT 47 + E+DVIV+GTGL E I++ S +G++VLH+D YYGG +S + Sbjct: 5 LPSEFDVIVIGTGLPESIIAAACSRSGRRVLHVDSRSYYGGNWASFS 51 >gi|224028271 choroideremia isoform b [Homo sapiens] Length = 110 Score = 50.8 bits (120), Expect = 2e-06 Identities = 22/47 (46%), Positives = 33/47 (70%) Query: 1 MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSIT 47 + E+DVIV+GTGL E I++ S +G++VLH+D YYGG +S + Sbjct: 5 LPSEFDVIVIGTGLPESIIAAACSRSGRRVLHVDSRSYYGGNWASFS 51 >gi|19923312 v-myc myelocytomatosis viral related oncogene, neuroblastoma derived [Homo sapiens] Length = 464 Score = 33.9 bits (76), Expect = 0.31 Identities = 15/36 (41%), Positives = 22/36 (61%) Query: 34 DRNPYYGGESSSITPLEELYKRFQLLEGPPESMGRG 69 D + +Y G S P E+++K+F+LL PP S RG Sbjct: 31 DEDDFYFGGPDSTPPGEDIWKKFELLPTPPLSPSRG 66 >gi|156142199 euchromatic histone-lysine N-methyltransferase 2 isoform b [Homo sapiens] Length = 1176 Score = 32.3 bits (72), Expect = 0.90 Identities = 27/123 (21%), Positives = 50/123 (40%), Gaps = 3/123 (2%) Query: 257 DIIMENGKV--VGVKSEGEVARCKQLICDPSYIPDRVRKAGQVIRIICILSHPIKNTNDA 314 D+ ++G+V + + G ++R +CDP+ IP RV Q +R I ++ Sbjct: 1054 DLDNKDGEVYCIDARYYGNISRFINHLCDPNIIPVRVFMLHQDLRFPRIAFFSSRDIRTG 1113 Query: 315 NSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVETTDPEKEVEPALELLE 374 + KS + C + + IA+ + + DP E+ P L L Sbjct: 1114 EELGFDYGDRFWDIKSKYFTCQCG-SEKCKHSAEAIALEQSRLARLDPHPELLPELGSLP 1172 Query: 375 PID 377 P++ Sbjct: 1173 PVN 1175 >gi|156142197 euchromatic histone-lysine N-methyltransferase 2 isoform a [Homo sapiens] Length = 1210 Score = 32.3 bits (72), Expect = 0.90 Identities = 27/123 (21%), Positives = 50/123 (40%), Gaps = 3/123 (2%) Query: 257 DIIMENGKV--VGVKSEGEVARCKQLICDPSYIPDRVRKAGQVIRIICILSHPIKNTNDA 314 D+ ++G+V + + G ++R +CDP+ IP RV Q +R I ++ Sbjct: 1088 DLDNKDGEVYCIDARYYGNISRFINHLCDPNIIPVRVFMLHQDLRFPRIAFFSSRDIRTG 1147 Query: 315 NSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVETTDPEKEVEPALELLE 374 + KS + C + + IA+ + + DP E+ P L L Sbjct: 1148 EELGFDYGDRFWDIKSKYFTCQCG-SEKCKHSAEAIALEQSRLARLDPHPELLPELGSLP 1206 Query: 375 PID 377 P++ Sbjct: 1207 PVN 1209 >gi|112293277 DnaJ (Hsp40) homolog, subfamily C, member 8 [Homo sapiens] Length = 253 Score = 30.8 bits (68), Expect = 2.6 Identities = 27/95 (28%), Positives = 39/95 (41%), Gaps = 17/95 (17%) Query: 283 DPSYIPDRVRKAGQVIRIICILSHPIKNTNDANSCQ-----------IIIPQNQVNRKSD 331 DP + ++K R + IL HP KN +DA+ Q +++ Q Q R D Sbjct: 65 DPEVTDEEIKKR---FRQLSILVHPDKNQDDADRAQKAFEAVDKAYKLLLDQEQKKRALD 121 Query: 332 IYVCMISYA-HNVAAQGKYIAIAS--TTVETTDPE 363 + Y H V + K + T VE DPE Sbjct: 122 VIQAGKEYVEHTVKERKKQLKKEGKPTIVEEDDPE 156 >gi|203098013 all-trans-13,14-dihydroretinol saturase [Homo sapiens] Length = 610 Score = 29.6 bits (65), Expect = 5.8 Identities = 13/39 (33%), Positives = 25/39 (64%) Query: 3 EEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGG 41 E+ DV+V+G+G + I++ GK+VL ++++ GG Sbjct: 66 EKLDVVVIGSGFGGLAAAAILAKAGKRVLVLEQHTKAGG 104 >gi|239757875 PREDICTED: similar to L-myc-2 protein, partial [Homo sapiens] Length = 349 Score = 28.9 bits (63), Expect = 9.9 Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 10/48 (20%) Query: 29 KVLHMDRNPYY-------GGES--SSITPLEELYKRFQLLEGPPESMG 67 K +MDR+ Y+ GGE S TP E+++K+F+L+ PP +G Sbjct: 56 KQANMDRDSYHHYFYDYDGGEDFYRSTTPSEDIWKKFELVP-PPWDLG 102 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.319 0.138 0.407 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 16,618,242 Number of Sequences: 37866 Number of extensions: 732606 Number of successful extensions: 1494 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 8 Number of HSP's successfully gapped in prelim test: 4 Number of HSP's that attempted gapping in prelim test: 1481 Number of HSP's gapped (non-prelim): 17 length of query: 447 length of database: 18,247,518 effective HSP length: 105 effective length of query: 342 effective length of database: 14,271,588 effective search space: 4880883096 effective search space used: 4880883096 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.