Search of human proteins with 4503423

Search of human proteins with 4503423

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|4503423 deoxyuridine triphosphatase isoform 2 [Homo sapiens]
         (164 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|4503423 deoxyuridine triphosphatase isoform 2 [Homo sapiens]       332   7e-92
gi|70906441 deoxyuridine triphosphatase isoform 1 precursor [Hom...   321   2e-88
gi|70906444 deoxyuridine triphosphatase isoform 3 [Homo sapiens]      286   7e-78
gi|169217315 PREDICTED: hypothetical protein [Homo sapiens]            33   0.14 
gi|113430659 PREDICTED: hypothetical protein [Homo sapiens]            33   0.14 
gi|113430177 PREDICTED: hypothetical protein [Homo sapiens]            33   0.14 
gi|113430175 PREDICTED: hypothetical protein [Homo sapiens]            33   0.14 
gi|4827004 single-minded homolog 2 long isoform [Homo sapiens]         30   1.2  
gi|145309322 insulinoma-associated protein IA-6 [Homo sapiens]         29   2.1  

>gi|4503423 deoxyuridine triphosphatase isoform 2 [Homo sapiens]
          Length = 164

 Score =  332 bits (852), Expect = 7e-92
 Identities = 164/164 (100%), Positives = 164/164 (100%)

Query: 1   MPCSEETPAISPSKRARPAEVGGMQLRFARLSEHATAPTRGSARAAGYDLYSAYDYTIPP 60
           MPCSEETPAISPSKRARPAEVGGMQLRFARLSEHATAPTRGSARAAGYDLYSAYDYTIPP
Sbjct: 1   MPCSEETPAISPSKRARPAEVGGMQLRFARLSEHATAPTRGSARAAGYDLYSAYDYTIPP 60

Query: 61  MEKAVVKTDIQIALPSGCYGRVAPRSGLAAKHFIDVGAGVIDEDYRGNVGVVLFNFGKEK 120
           MEKAVVKTDIQIALPSGCYGRVAPRSGLAAKHFIDVGAGVIDEDYRGNVGVVLFNFGKEK
Sbjct: 61  MEKAVVKTDIQIALPSGCYGRVAPRSGLAAKHFIDVGAGVIDEDYRGNVGVVLFNFGKEK 120

Query: 121 FEVKKGDRIAQLICERIFYPEIEEVQALDDTERGSGGFGSTGKN 164
           FEVKKGDRIAQLICERIFYPEIEEVQALDDTERGSGGFGSTGKN
Sbjct: 121 FEVKKGDRIAQLICERIFYPEIEEVQALDDTERGSGGFGSTGKN 164


>gi|70906441 deoxyuridine triphosphatase isoform 1 precursor [Homo
           sapiens]
          Length = 252

 Score =  321 bits (822), Expect = 2e-88
 Identities = 159/159 (100%), Positives = 159/159 (100%)

Query: 6   ETPAISPSKRARPAEVGGMQLRFARLSEHATAPTRGSARAAGYDLYSAYDYTIPPMEKAV 65
           ETPAISPSKRARPAEVGGMQLRFARLSEHATAPTRGSARAAGYDLYSAYDYTIPPMEKAV
Sbjct: 94  ETPAISPSKRARPAEVGGMQLRFARLSEHATAPTRGSARAAGYDLYSAYDYTIPPMEKAV 153

Query: 66  VKTDIQIALPSGCYGRVAPRSGLAAKHFIDVGAGVIDEDYRGNVGVVLFNFGKEKFEVKK 125
           VKTDIQIALPSGCYGRVAPRSGLAAKHFIDVGAGVIDEDYRGNVGVVLFNFGKEKFEVKK
Sbjct: 154 VKTDIQIALPSGCYGRVAPRSGLAAKHFIDVGAGVIDEDYRGNVGVVLFNFGKEKFEVKK 213

Query: 126 GDRIAQLICERIFYPEIEEVQALDDTERGSGGFGSTGKN 164
           GDRIAQLICERIFYPEIEEVQALDDTERGSGGFGSTGKN
Sbjct: 214 GDRIAQLICERIFYPEIEEVQALDDTERGSGGFGSTGKN 252


>gi|70906444 deoxyuridine triphosphatase isoform 3 [Homo sapiens]
          Length = 141

 Score =  286 bits (731), Expect = 7e-78
 Identities = 141/141 (100%), Positives = 141/141 (100%)

Query: 24  MQLRFARLSEHATAPTRGSARAAGYDLYSAYDYTIPPMEKAVVKTDIQIALPSGCYGRVA 83
           MQLRFARLSEHATAPTRGSARAAGYDLYSAYDYTIPPMEKAVVKTDIQIALPSGCYGRVA
Sbjct: 1   MQLRFARLSEHATAPTRGSARAAGYDLYSAYDYTIPPMEKAVVKTDIQIALPSGCYGRVA 60

Query: 84  PRSGLAAKHFIDVGAGVIDEDYRGNVGVVLFNFGKEKFEVKKGDRIAQLICERIFYPEIE 143
           PRSGLAAKHFIDVGAGVIDEDYRGNVGVVLFNFGKEKFEVKKGDRIAQLICERIFYPEIE
Sbjct: 61  PRSGLAAKHFIDVGAGVIDEDYRGNVGVVLFNFGKEKFEVKKGDRIAQLICERIFYPEIE 120

Query: 144 EVQALDDTERGSGGFGSTGKN 164
           EVQALDDTERGSGGFGSTGKN
Sbjct: 121 EVQALDDTERGSGGFGSTGKN 141


>gi|169217315 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 2061

 Score = 32.7 bits (73), Expect = 0.14
 Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 5/80 (6%)

Query: 1    MPCSEETPAISPSKRARPAEVGGMQLRFARLSEHATAPTRGSARAAGYDLYSAYDYTIPP 60
            + C E+   +   KRA+ A    +   F+ +S +     RGS R +  D Y+A D +  P
Sbjct: 1810 LDCKEKEKLL---KRAQKAYKQSVNWCFSLISHYREGLVRGSFRGSFLDYYAA-DISY-P 1864

Query: 61   MEKAVVKTDIQIALPSGCYG 80
            + +A+ + D+QI  P   YG
Sbjct: 1865 IRRAIQEGDLQIDFPKVNYG 1884


>gi|113430659 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 2061

 Score = 32.7 bits (73), Expect = 0.14
 Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 5/80 (6%)

Query: 1    MPCSEETPAISPSKRARPAEVGGMQLRFARLSEHATAPTRGSARAAGYDLYSAYDYTIPP 60
            + C E+   +   KRA+ A    +   F+ +S +     RGS R +  D Y+A D +  P
Sbjct: 1810 LDCKEKEKLL---KRAQKAYKQSVNWCFSLISHYREGLVRGSFRGSFLDYYAA-DISY-P 1864

Query: 61   MEKAVVKTDIQIALPSGCYG 80
            + +A+ + D+QI  P   YG
Sbjct: 1865 IRRAIQEGDLQIDFPKVNYG 1884


>gi|113430177 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 2028

 Score = 32.7 bits (73), Expect = 0.14
 Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 5/80 (6%)

Query: 1    MPCSEETPAISPSKRARPAEVGGMQLRFARLSEHATAPTRGSARAAGYDLYSAYDYTIPP 60
            + C E+   +   KRA+ A    +   F+ +S +     RGS R +  D Y+A D +  P
Sbjct: 1777 LDCKEKEKLL---KRAQKAYKQSVNWCFSLISHYREGLVRGSFRGSFLDYYAA-DISY-P 1831

Query: 61   MEKAVVKTDIQIALPSGCYG 80
            + +A+ + D+QI  P   YG
Sbjct: 1832 IRRAIQEGDLQIDFPKVNYG 1851


>gi|113430175 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 1934

 Score = 32.7 bits (73), Expect = 0.14
 Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 5/80 (6%)

Query: 1    MPCSEETPAISPSKRARPAEVGGMQLRFARLSEHATAPTRGSARAAGYDLYSAYDYTIPP 60
            + C E+   +   KRA+ A    +   F+ +S +     RGS R +  D Y+A D +  P
Sbjct: 1683 LDCKEKEKLL---KRAQKAYKQSVNWCFSLISHYREGLVRGSFRGSFLDYYAA-DISY-P 1737

Query: 61   MEKAVVKTDIQIALPSGCYG 80
            + +A+ + D+QI  P   YG
Sbjct: 1738 IRRAIQEGDLQIDFPKVNYG 1757


>gi|4827004 single-minded homolog 2 long isoform [Homo sapiens]
          Length = 667

 Score = 29.6 bits (65), Expect = 1.2
 Identities = 16/41 (39%), Positives = 20/41 (48%)

Query: 6   ETPAISPSKRARPAEVGGMQLRFARLSEHATAPTRGSARAA 46
           E PA+ P+K AR A   G +L  AR +    AP    A  A
Sbjct: 551 EEPALGPAKAARQAARDGARLALARAAPECCAPPTPEAPGA 591


>gi|145309322 insulinoma-associated protein IA-6 [Homo sapiens]
          Length = 566

 Score = 28.9 bits (63), Expect = 2.1
 Identities = 16/55 (29%), Positives = 25/55 (45%)

Query: 6   ETPAISPSKRARPAEVGGMQLRFARLSEHATAPTRGSARAAGYDLYSAYDYTIPP 60
           E P  SPS    PA+  G +LR A L    ++P    +   G    +A+  ++ P
Sbjct: 100 EGPGPSPSPSPSPAKPAGAELRRAFLERCLSSPVSAESFPGGAAAVAAFSCSVAP 154


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.317    0.137    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,563,737
Number of Sequences: 37866
Number of extensions: 275522
Number of successful extensions: 568
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 559
Number of HSP's gapped (non-prelim): 9
length of query: 164
length of database: 18,247,518
effective HSP length: 94
effective length of query: 70
effective length of database: 14,688,114
effective search space: 1028167980
effective search space used: 1028167980
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.