Search of human proteins with 42560246

Search of human proteins with 42560246

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|42560246 RNA polymerase I subunit isoform 1 [Homo sapiens]
         (346 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|42560246 RNA polymerase I subunit isoform 1 [Homo sapiens]         693   0.0  
gi|4759046 RNA polymerase I subunit isoform 2 [Homo sapiens]          619   e-177
gi|14702171 DNA directed RNA polymerase II polypeptide C [Homo s...   100   1e-21
gi|45331213 RAN binding protein 6 [Homo sapiens]                       30   3.2  
gi|224831257 importin 13 [Homo sapiens]                                29   5.4  
gi|54873613 agrin [Homo sapiens]                                       29   5.4  
gi|154091028 sorting nexin 29 [Homo sapiens]                           29   5.4  
gi|7661858 Rho GTPase activating protein 11A isoform 1 [Homo sap...    29   7.1  
gi|40788018 Rho GTPase activating protein 11A isoform 2 [Homo sa...    29   7.1  

>gi|42560246 RNA polymerase I subunit isoform 1 [Homo sapiens]
          Length = 346

 Score =  693 bits (1789), Expect = 0.0
 Identities = 346/346 (100%), Positives = 346/346 (100%)

Query: 1   MAASQAVEEMRSRVVLGEFGVRNVHTTDFPGNYSGYDDAWDQDRFEKNFRVDVVHMDENS 60
           MAASQAVEEMRSRVVLGEFGVRNVHTTDFPGNYSGYDDAWDQDRFEKNFRVDVVHMDENS
Sbjct: 1   MAASQAVEEMRSRVVLGEFGVRNVHTTDFPGNYSGYDDAWDQDRFEKNFRVDVVHMDENS 60

Query: 61  LEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADPR 120
           LEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADPR
Sbjct: 61  LEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADPR 120

Query: 121 LFEYRNQGDEEGTEIDTLQFRLQVRCTRNPHAAKDSSDPNELYVNHKVYTRHMTWIPLGN 180
           LFEYRNQGDEEGTEIDTLQFRLQVRCTRNPHAAKDSSDPNELYVNHKVYTRHMTWIPLGN
Sbjct: 121 LFEYRNQGDEEGTEIDTLQFRLQVRCTRNPHAAKDSSDPNELYVNHKVYTRHMTWIPLGN 180

Query: 181 QADLFPEGTIRPVHDDILIAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPDIT 240
           QADLFPEGTIRPVHDDILIAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPDIT
Sbjct: 181 QADLFPEGTIRPVHDDILIAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPDIT 240

Query: 241 LLEPVEGEAAEELSRCFSPGVIEVQEVQGKKVARVANPRLDTFSREIFRNEKLKKVVRLA 300
           LLEPVEGEAAEELSRCFSPGVIEVQEVQGKKVARVANPRLDTFSREIFRNEKLKKVVRLA
Sbjct: 241 LLEPVEGEAAEELSRCFSPGVIEVQEVQGKKVARVANPRLDTFSREIFRNEKLKKVVRLA 300

Query: 301 RVRDHYIFSVESTGVLPPDVLVSEAIKVLMGKCRRFLDELDAVQMD 346
           RVRDHYIFSVESTGVLPPDVLVSEAIKVLMGKCRRFLDELDAVQMD
Sbjct: 301 RVRDHYIFSVESTGVLPPDVLVSEAIKVLMGKCRRFLDELDAVQMD 346


>gi|4759046 RNA polymerase I subunit isoform 2 [Homo sapiens]
          Length = 342

 Score =  619 bits (1595), Expect = e-177
 Identities = 307/307 (100%), Positives = 307/307 (100%)

Query: 1   MAASQAVEEMRSRVVLGEFGVRNVHTTDFPGNYSGYDDAWDQDRFEKNFRVDVVHMDENS 60
           MAASQAVEEMRSRVVLGEFGVRNVHTTDFPGNYSGYDDAWDQDRFEKNFRVDVVHMDENS
Sbjct: 1   MAASQAVEEMRSRVVLGEFGVRNVHTTDFPGNYSGYDDAWDQDRFEKNFRVDVVHMDENS 60

Query: 61  LEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADPR 120
           LEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADPR
Sbjct: 61  LEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADPR 120

Query: 121 LFEYRNQGDEEGTEIDTLQFRLQVRCTRNPHAAKDSSDPNELYVNHKVYTRHMTWIPLGN 180
           LFEYRNQGDEEGTEIDTLQFRLQVRCTRNPHAAKDSSDPNELYVNHKVYTRHMTWIPLGN
Sbjct: 121 LFEYRNQGDEEGTEIDTLQFRLQVRCTRNPHAAKDSSDPNELYVNHKVYTRHMTWIPLGN 180

Query: 181 QADLFPEGTIRPVHDDILIAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPDIT 240
           QADLFPEGTIRPVHDDILIAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPDIT
Sbjct: 181 QADLFPEGTIRPVHDDILIAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPDIT 240

Query: 241 LLEPVEGEAAEELSRCFSPGVIEVQEVQGKKVARVANPRLDTFSREIFRNEKLKKVVRLA 300
           LLEPVEGEAAEELSRCFSPGVIEVQEVQGKKVARVANPRLDTFSREIFRNEKLKKVVRLA
Sbjct: 241 LLEPVEGEAAEELSRCFSPGVIEVQEVQGKKVARVANPRLDTFSREIFRNEKLKKVVRLA 300

Query: 301 RVRDHYI 307
           RVRDHYI
Sbjct: 301 RVRDHYI 307


>gi|14702171 DNA directed RNA polymerase II polypeptide C [Homo
           sapiens]
          Length = 275

 Score =  100 bits (250), Expect = 1e-21
 Identities = 64/199 (32%), Positives = 105/199 (52%), Gaps = 15/199 (7%)

Query: 51  VDVVHMDENSLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRL 110
           V +  + + +++F +   D A+AN+ RR+ +AEVP +A++ V +  N+S++ DE +AHRL
Sbjct: 9   VRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDEFIAHRL 68

Query: 111 GLIPIHADPRLFEYRNQGD---EEGTEIDTLQFRLQVRCTRNPHAAKDSSDPNELYVNHK 167
           GLIP+ +D  + + +   D   EE     +++F L VRC         + D      +  
Sbjct: 69  GLIPLISDDIVDKLQYSRDCTCEEFCPECSVEFTLDVRC---------NEDQTRHVTSRD 119

Query: 168 VYTRHMTWIPL-GNQADLFPEGTIRPVHDDILIAQLRPGQEIDLLMHCVKGIGKDHAKFS 226
           + +     IP+     D  P   +    DDILI +LR GQE+ L  +  KG GK+HAK++
Sbjct: 120 LISNSPRVIPVTSRNRDNDPNDYVE--QDDILIVKLRKGQELRLRAYAKKGFGKEHAKWN 177

Query: 227 PVATASYRLLPDITLLEPV 245
           P A  ++   PD  L   V
Sbjct: 178 PTAGVAFEYDPDNALRHTV 196


>gi|45331213 RAN binding protein 6 [Homo sapiens]
          Length = 1105

 Score = 30.0 bits (66), Expect = 3.2
 Identities = 14/51 (27%), Positives = 25/51 (49%)

Query: 68   IDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHAD 118
            I  A +   + ++  E    A+ K+L +    +  DE+L H L  +P+H D
Sbjct: 963  IKCANSKTKKNVIATENCISAIGKILKFKPNCVNVDEVLPHWLSWLPLHED 1013


>gi|224831257 importin 13 [Homo sapiens]
          Length = 963

 Score = 29.3 bits (64), Expect = 5.4
 Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 15/75 (20%)

Query: 239 ITLLEPVEGEAAEELSRCF---------------SPGVIEVQEVQGKKVARVANPRLDTF 283
           I +LE + G+A+  L  CF               S  + E  +  G   AR++  + DTF
Sbjct: 867 IAVLEAIGGQASRSLMDCFADILFALNKHCFSLLSMWIKEALQPPGFPSARLSPEQKDTF 926

Query: 284 SREIFRNEKLKKVVR 298
           S++I R    K+ V+
Sbjct: 927 SQQILRERVNKRRVK 941


>gi|54873613 agrin [Homo sapiens]
          Length = 2045

 Score = 29.3 bits (64), Expect = 5.4
 Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 13/58 (22%)

Query: 260  GVIEVQEVQGKKV---ARVANPRLDTFSR----------EIFRNEKLKKVVRLARVRD 304
            GV+E++ V+G+++     +A+P+ + F            ++FRN  +KK  R  R+RD
Sbjct: 1136 GVLELEGVEGQELFYTPEMADPKSELFGETARSIESTLDDLFRNSDVKKDFRSVRLRD 1193


>gi|154091028 sorting nexin 29 [Homo sapiens]
          Length = 428

 Score = 29.3 bits (64), Expect = 5.4
 Identities = 13/35 (37%), Positives = 22/35 (62%)

Query: 238 DITLLEPVEGEAAEELSRCFSPGVIEVQEVQGKKV 272
           ++T+ E   GE AEEL+  +   +IEV E+ G+ +
Sbjct: 184 EVTVAEQKPGEIAEELASSYERKLIEVAEMHGELI 218


>gi|7661858 Rho GTPase activating protein 11A isoform 1 [Homo
           sapiens]
          Length = 1023

 Score = 28.9 bits (63), Expect = 7.1
 Identities = 13/35 (37%), Positives = 22/35 (62%)

Query: 265 QEVQGKKVARVANPRLDTFSREIFRNEKLKKVVRL 299
           + + GKKV RV + +   FS +I   EK+++ +RL
Sbjct: 403 KRIAGKKVCRVESGKAGCFSPKISHKEKVRRSLRL 437


>gi|40788018 Rho GTPase activating protein 11A isoform 2 [Homo
           sapiens]
          Length = 501

 Score = 28.9 bits (63), Expect = 7.1
 Identities = 13/35 (37%), Positives = 22/35 (62%)

Query: 265 QEVQGKKVARVANPRLDTFSREIFRNEKLKKVVRL 299
           + + GKKV RV + +   FS +I   EK+++ +RL
Sbjct: 403 KRIAGKKVCRVESGKAGCFSPKISHKEKVRRSLRL 437


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.321    0.138    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,362,431
Number of Sequences: 37866
Number of extensions: 519922
Number of successful extensions: 995
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 987
Number of HSP's gapped (non-prelim): 9
length of query: 346
length of database: 18,247,518
effective HSP length: 103
effective length of query: 243
effective length of database: 14,347,320
effective search space: 3486398760
effective search space used: 3486398760
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.