Search of human proteins with 40255029

Search of human proteins with 40255029

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|40255029 coiled-coil domain containing 126 [Homo sapiens]
         (140 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|40255029 coiled-coil domain containing 126 [Homo sapiens]          271   1e-73
gi|4505167 N-acetylglucosaminyltransferase V [Homo sapiens]           133   5e-32
gi|5031981 proteasome 26S subunit, non-ATPase 14 [Homo sapiens]        33   0.100
gi|153792780 additional sex combs like 2 [Homo sapiens]                29   1.4  
gi|119395734 breast cancer 2, early onset [Homo sapiens]               27   5.5  
gi|82617626 paralemmin 2 isoform b [Homo sapiens]                      27   7.1  
gi|82524851 paralemmin 2 isoform a [Homo sapiens]                      27   7.1  

>gi|40255029 coiled-coil domain containing 126 [Homo sapiens]
          Length = 140

 Score =  271 bits (694), Expect = 1e-73
 Identities = 140/140 (100%), Positives = 140/140 (100%)

Query: 1   MFFTISRKNMSQKLSLLLLVFGLIWGLMLLHYTFQQPRHQSSVKLREQILDLSKRYVKAL 60
           MFFTISRKNMSQKLSLLLLVFGLIWGLMLLHYTFQQPRHQSSVKLREQILDLSKRYVKAL
Sbjct: 1   MFFTISRKNMSQKLSLLLLVFGLIWGLMLLHYTFQQPRHQSSVKLREQILDLSKRYVKAL 60

Query: 61  AEENKNTVDVENGASMAGYADLKRTIAVLLDDILQRLVKLENKVDYIVVNGSAANTTNGT 120
           AEENKNTVDVENGASMAGYADLKRTIAVLLDDILQRLVKLENKVDYIVVNGSAANTTNGT
Sbjct: 61  AEENKNTVDVENGASMAGYADLKRTIAVLLDDILQRLVKLENKVDYIVVNGSAANTTNGT 120

Query: 121 SGNLVPVTTNKRTNVSGSIR 140
           SGNLVPVTTNKRTNVSGSIR
Sbjct: 121 SGNLVPVTTNKRTNVSGSIR 140


>gi|4505167 N-acetylglucosaminyltransferase V [Homo sapiens]
          Length = 741

 Score =  133 bits (334), Expect = 5e-32
 Identities = 71/115 (61%), Positives = 87/115 (75%), Gaps = 2/115 (1%)

Query: 8   KNMSQKLSLLLLVFGLIWGLMLLHYTFQQ-PRHQSSVKLREQILDLSKRYVKALAEENKN 66
           K  SQKL   L+ FG IWG+MLLH+T QQ  + +SS  LREQILDLSKRY+KALAEEN+N
Sbjct: 8   KLSSQKLGFFLVTFGFIWGMMLLHFTIQQRTQPESSSMLREQILDLSKRYIKALAEENRN 67

Query: 67  TVDVENGASMAGYADLKRTIAVLLDDILQRLVKLENKVDYIVVNGSAANTTNGTS 121
            VD      M  Y DLK+T+AVLLD+ILQR+ KLE+KVD +VVNG+  N+TN T+
Sbjct: 68  VVDGPYAGVMTAY-DLKKTLAVLLDNILQRIGKLESKVDNLVVNGTGTNSTNSTT 121


>gi|5031981 proteasome 26S subunit, non-ATPase 14 [Homo sapiens]
          Length = 310

 Score = 32.7 bits (73), Expect = 0.100
 Identities = 29/89 (32%), Positives = 47/89 (52%), Gaps = 5/89 (5%)

Query: 7   RKN-MSQKLSLLLLVFGLIWGLMLLHYTFQQPRHQSSVKLREQILDLSKRYVKALAEENK 65
           RKN + QK+ L L     + GL L  Y+     ++S VK   ++L+L+K Y KA+ EE+K
Sbjct: 208 RKNELEQKMLLNLHKKSWMEGLTLQDYSEHCKHNESVVK---EMLELAKNYNKAVEEEDK 264

Query: 66  NTVDVENGASMAGYADLKRTIAVLLDDIL 94
            T + +      G  D KR +   +D ++
Sbjct: 265 MTPE-QLAIKNVGKQDPKRHLEEHVDVLM 292


>gi|153792780 additional sex combs like 2 [Homo sapiens]
          Length = 1435

 Score = 28.9 bits (63), Expect = 1.4
 Identities = 31/101 (30%), Positives = 44/101 (43%), Gaps = 20/101 (19%)

Query: 41  SSVKLREQILDLSKR--------YVKALAEENKNTVDVENGASMAGYADL-----KRTIA 87
           SSVK+   +L L K+        + + +       +DVE   S+    +L     K T +
Sbjct: 234 SSVKVENTLLGLGKKSFQRSERLHTRQMKRTKCADIDVETPDSILVNTNLRALINKHTFS 293

Query: 88  VLLDDILQRLVKLENKVDYIV-------VNGSAANTTNGTS 121
           VL  D  QRL+ L  +VD  V       +NGSA N    TS
Sbjct: 294 VLPGDCQQRLLLLLPEVDRQVGPDGLMKLNGSALNNEFFTS 334


>gi|119395734 breast cancer 2, early onset [Homo sapiens]
          Length = 3418

 Score = 26.9 bits (58), Expect = 5.5
 Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 2/54 (3%)

Query: 50  LDLSKRYVKALAEENKNTVDVENGASMAGYADLKRTIAVLLDDILQRLVKLENK 103
           + + K  V  LAEENKN+  V+    M    DLK  I++ +D I ++     NK
Sbjct: 941 VSIKKDLVYVLAEENKNS--VKQHIKMTLGQDLKSDISLNIDKIPEKNNDYMNK 992


>gi|82617626 paralemmin 2 isoform b [Homo sapiens]
          Length = 379

 Score = 26.6 bits (57), Expect = 7.1
 Identities = 13/55 (23%), Positives = 28/55 (50%)

Query: 65  KNTVDVENGASMAGYADLKRTIAVLLDDILQRLVKLENKVDYIVVNGSAANTTNG 119
           +N  D E    + GY +  +   VL+D+  ++ ++ +   D   ++G+AA   +G
Sbjct: 286 QNIEDEEETKKVLGYDETIKAELVLIDEDDEKSLREKTVTDVSTIDGNAAELVSG 340


>gi|82524851 paralemmin 2 isoform a [Homo sapiens]
          Length = 413

 Score = 26.6 bits (57), Expect = 7.1
 Identities = 13/55 (23%), Positives = 28/55 (50%)

Query: 65  KNTVDVENGASMAGYADLKRTIAVLLDDILQRLVKLENKVDYIVVNGSAANTTNG 119
           +N  D E    + GY +  +   VL+D+  ++ ++ +   D   ++G+AA   +G
Sbjct: 320 QNIEDEEETKKVLGYDETIKAELVLIDEDDEKSLREKTVTDVSTIDGNAAELVSG 374


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.318    0.133    0.361 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,138,679
Number of Sequences: 37866
Number of extensions: 140233
Number of successful extensions: 530
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 524
Number of HSP's gapped (non-prelim): 7
length of query: 140
length of database: 18,247,518
effective HSP length: 92
effective length of query: 48
effective length of database: 14,763,846
effective search space: 708664608
effective search space used: 708664608
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.