Search of human proteins with 38788445

Search of human proteins with 38788445

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|38788445 ornithine carbamoyltransferase precursor [Homo
sapiens]
         (354 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|38788445 ornithine carbamoyltransferase precursor [Homo sapiens]   709   0.0  
gi|18105007 carbamoylphosphate synthetase 2/aspartate transcarba...    96   6e-20
gi|4758020 ciliary neurotrophic factor [Homo sapiens]                  35   0.078
gi|27477134 nucleoporin 210 [Homo sapiens]                             35   0.13 
gi|93141033 PAX interacting protein 1 [Homo sapiens]                   32   0.66 
gi|24431975 hypothetical protein LOC26148 [Homo sapiens]               31   1.9  
gi|155722983 TNF receptor-associated protein 1 [Homo sapiens]          29   5.6  
gi|13376429 hypothetical protein LOC80011 [Homo sapiens]               29   5.6  

>gi|38788445 ornithine carbamoyltransferase precursor [Homo sapiens]
          Length = 354

 Score =  709 bits (1831), Expect = 0.0
 Identities = 354/354 (100%), Positives = 354/354 (100%)

Query: 1   MLFNLRILLNNAAFRNGHNFMVRNFRCGQPLQNKVQLKGRDLLTLKNFTGEEIKYMLWLS 60
           MLFNLRILLNNAAFRNGHNFMVRNFRCGQPLQNKVQLKGRDLLTLKNFTGEEIKYMLWLS
Sbjct: 1   MLFNLRILLNNAAFRNGHNFMVRNFRCGQPLQNKVQLKGRDLLTLKNFTGEEIKYMLWLS 60

Query: 61  ADLKFRIKQKGEYLPLLQGKSLGMIFEKRSTRTRLSTETGFALLGGHPCFLTTQDIHLGV 120
           ADLKFRIKQKGEYLPLLQGKSLGMIFEKRSTRTRLSTETGFALLGGHPCFLTTQDIHLGV
Sbjct: 61  ADLKFRIKQKGEYLPLLQGKSLGMIFEKRSTRTRLSTETGFALLGGHPCFLTTQDIHLGV 120

Query: 121 NESLTDTARVLSSMADAVLARVYKQSDLDTLAKEASIPIINGLSDLYHPIQILADYLTLQ 180
           NESLTDTARVLSSMADAVLARVYKQSDLDTLAKEASIPIINGLSDLYHPIQILADYLTLQ
Sbjct: 121 NESLTDTARVLSSMADAVLARVYKQSDLDTLAKEASIPIINGLSDLYHPIQILADYLTLQ 180

Query: 181 EHYSSLKGLTLSWIGDGNNILHSIMMSAAKFGMHLQAATPKGYEPDASVTKLAEQYAKEN 240
           EHYSSLKGLTLSWIGDGNNILHSIMMSAAKFGMHLQAATPKGYEPDASVTKLAEQYAKEN
Sbjct: 181 EHYSSLKGLTLSWIGDGNNILHSIMMSAAKFGMHLQAATPKGYEPDASVTKLAEQYAKEN 240

Query: 241 GTKLLLTNDPLEAAHGGNVLITDTWISMGQEEEKKKRLQAFQGYQVTMKTAKVAASDWTF 300
           GTKLLLTNDPLEAAHGGNVLITDTWISMGQEEEKKKRLQAFQGYQVTMKTAKVAASDWTF
Sbjct: 241 GTKLLLTNDPLEAAHGGNVLITDTWISMGQEEEKKKRLQAFQGYQVTMKTAKVAASDWTF 300

Query: 301 LHCLPRKPEEVDDEVFYSPRSLVFPEAENRKWTIMAVMVSLLTDYSPQLQKPKF 354
           LHCLPRKPEEVDDEVFYSPRSLVFPEAENRKWTIMAVMVSLLTDYSPQLQKPKF
Sbjct: 301 LHCLPRKPEEVDDEVFYSPRSLVFPEAENRKWTIMAVMVSLLTDYSPQLQKPKF 354


>gi|18105007 carbamoylphosphate synthetase 2/aspartate
            transcarbamylase/dihydroorotase [Homo sapiens]
          Length = 2225

 Score = 95.5 bits (236), Expect = 6e-20
 Identities = 79/309 (25%), Positives = 141/309 (45%), Gaps = 10/309 (3%)

Query: 37   LKGRDLLTLKNFTGEEIKYMLWLSADLKFRIKQKGEYLPLLQGKSLGMIFEKRSTRTRLS 96
            L G+ +L+++ FT +++ ++  ++  L+  + QK   L +L+GK +  +F + STRT  S
Sbjct: 1921 LVGQHILSVQQFTKDQMSHLFNVAHTLRMMV-QKERSLDILKGKVMASMFYEVSTRTSSS 1979

Query: 97   TETGFALLGGHPCFLTTQDIHLGVNESLTDTARVLSSMADAVLARVYKQSDLDTLAKEAS 156
                 A LGG     +     +   ESL D+ + +S  AD V+ R  +   ++  AK   
Sbjct: 1980 FAAAMARLGGAVLSFSEATSSVQKGESLADSVQTMSCYADVVVLRHPQPGAVELAAKHCR 2039

Query: 157  IPIINGLSDL-YHPIQILADYLTLQEHYSSLKGLTLSWIGD--GNNILHSIMMSAAKFGM 213
             P+IN    +  HP Q L D  T++E   ++ G+T++ +GD      +HS+     ++ +
Sbjct: 2040 RPVINAGDGVGEHPTQALLDIFTIREELGTVNGMTITMVGDLKHGRTVHSLACLLTQYRV 2099

Query: 214  HLQAATPKGYEPDASVTKLAEQYAKENGTKLLLTNDPLEAAHGGNVLITDTWISMGQEEE 273
             L+   P    P   +      +    GTK        EA    +VL   T I   +   
Sbjct: 2100 SLRYVAP----PSLRMPPTVRAFVASRGTKQEEFESIEEALPDTDVLYM-TRIQKERFGS 2154

Query: 274  KKKRLQAFQGYQVTMKTAKVAASDWTFLHCLPRKPEEVDDEVFYSPRSLVFPEAENRKWT 333
             ++    F  + +T      A      +H +PR   E+  EV   PR+  F +AEN  + 
Sbjct: 2155 TQEYEACFGQFILTPHIMTRAKKKMVVMHPMPR-VNEISVEVDSDPRAAYFRQAENGMYI 2213

Query: 334  IMAVMVSLL 342
             MA++ ++L
Sbjct: 2214 RMALLATVL 2222


>gi|4758020 ciliary neurotrophic factor [Homo sapiens]
          Length = 200

 Score = 35.4 bits (80), Expect = 0.078
 Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 3/62 (4%)

Query: 227 ASVTKLAEQYAKENGTKLLLTNDPLEAAHGGNVLITDTWISMGQEEEKKKRLQAFQGYQV 286
           + +T L E Y K  G   L  N  L++A G  V  TD W  + + E  ++ LQA++ + V
Sbjct: 29  SDLTALTESYVKHQG---LNKNINLDSADGMPVASTDQWSELTEAERLQENLQAYRTFHV 85

Query: 287 TM 288
            +
Sbjct: 86  LL 87


>gi|27477134 nucleoporin 210 [Homo sapiens]
          Length = 1887

 Score = 34.7 bits (78), Expect = 0.13
 Identities = 23/94 (24%), Positives = 48/94 (51%), Gaps = 2/94 (2%)

Query: 110  FLTTQDIHLGVNESLTDTARVLSSMADAV-LARVYKQSDLDTLAKEASIPIINGLSDLYH 168
            F T +D  + + +  T+   V+ +++  + L RV+  ++   L+    +P++  +S    
Sbjct: 1425 FATNRDDFVQIGKGPTNNTCVVRTVSVGLTLLRVW-DAEHPGLSDFMPLPVLQAISPELS 1483

Query: 169  PIQILADYLTLQEHYSSLKGLTLSWIGDGNNILH 202
               ++ D L L    +SL+GL+ +W    N+ILH
Sbjct: 1484 GAMVVGDVLCLATVLTSLEGLSGTWSSSANSILH 1517


>gi|93141033 PAX interacting protein 1 [Homo sapiens]
          Length = 1069

 Score = 32.3 bits (72), Expect = 0.66
 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 5/50 (10%)

Query: 284 YQVTMKTA--KVAASDWTFLHCLPRKPEEVDDEVFYSPRSLVFPEAENRK 331
           Y+  +K A  K+   DW  L C+  K ++  DE FY PR +++ E E  +
Sbjct: 149 YECALKRASIKIVTPDWV-LDCVSEKTKK--DEAFYHPRLIIYEEEEEEE 195


>gi|24431975 hypothetical protein LOC26148 [Homo sapiens]
          Length = 1247

 Score = 30.8 bits (68), Expect = 1.9
 Identities = 19/68 (27%), Positives = 30/68 (44%)

Query: 214 HLQAATPKGYEPDASVTKLAEQYAKENGTKLLLTNDPLEAAHGGNVLITDTWISMGQEEE 273
           H    TPKG  PD+  T+  E   K +  +     D  +   GG ++   T  +M  +E 
Sbjct: 551 HPGGTTPKGLLPDSFHTETLEDTEKPSVNERPSEKDAEQEGEGGGIITRQTLKNMLDKEV 610

Query: 274 KKKRLQAF 281
           K+ R + F
Sbjct: 611 KELRGEIF 618


>gi|155722983 TNF receptor-associated protein 1 [Homo sapiens]
          Length = 704

 Score = 29.3 bits (64), Expect = 5.6
 Identities = 29/133 (21%), Positives = 60/133 (45%), Gaps = 14/133 (10%)

Query: 111 LTTQDIHLGVNESLTDTARVLSSMADAVLARVYKQSDLDTLAK--EASIPIINGLSDLYH 168
           +T QD  +G+ +       ++S++    +AR   ++ LD L    EAS  II      ++
Sbjct: 154 ITIQDTGIGMTQE-----ELVSNLG--TIARSGSKAFLDALQNQAEASSKIIGQFGVGFY 206

Query: 169 PIQILADYLTLQEHYSSLKGLTLSWIGDGNNILHSIMMSAAKFG----MHLQAATPKGYE 224
              ++AD + +    ++   L   W+ DG+ +      S  + G    +HL++   K + 
Sbjct: 207 SAFMVADRVEVYSRSAAPGSLGYQWLSDGSGVFEIAEASGVRTGTKIIIHLKSDC-KEFS 265

Query: 225 PDASVTKLAEQYA 237
            +A V  +  +Y+
Sbjct: 266 SEARVRDVVTKYS 278


>gi|13376429 hypothetical protein LOC80011 [Homo sapiens]
          Length = 254

 Score = 29.3 bits (64), Expect = 5.6
 Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 20/83 (24%)

Query: 251 LEAAHGGNVLITDTWISMGQEEEKKKRLQAFQGYQVTMKTAKVAASDWTFLHCLPRKPEE 310
           ++    GN++I   ++S  + +E++KR Q                 +W  +   P  PEE
Sbjct: 1   MDGGDDGNLIIKKRFVSEAELDERRKRRQ----------------EEWEKVR-KPEDPEE 43

Query: 311 VDDEVFYSPRSLV--FPEAENRK 331
             +EV Y PRSL     E ++RK
Sbjct: 44  CPEEV-YDPRSLYERLQEQKDRK 65


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.319    0.134    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,491,638
Number of Sequences: 37866
Number of extensions: 504884
Number of successful extensions: 1313
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1307
Number of HSP's gapped (non-prelim): 8
length of query: 354
length of database: 18,247,518
effective HSP length: 103
effective length of query: 251
effective length of database: 14,347,320
effective search space: 3601177320
effective search space used: 3601177320
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.