Search of human proteins with 38348396

Search of human proteins with 38348396

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|38348396 hypothetical protein LOC375307 [Homo sapiens]
         (387 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|38348396 hypothetical protein LOC375307 [Homo sapiens]             780   0.0  
gi|222352147 RIIa domain-containing protein [Homo sapiens]             41   0.002
gi|93102424 hypothetical protein LOC23116 [Homo sapiens]               37   0.023
gi|4758958 cAMP-dependent protein kinase, regulatory subunit alp...    31   1.7  
gi|38455427 chaperonin containing TCP1, subunit 4 (delta) [Homo ...    31   2.2  
gi|134031945 SCO-spondin [Homo sapiens]                                29   6.3  
gi|154091020 leucine-rich repeats and calponin homology (CH) dom...    29   8.2  
gi|55770834 centromere protein F [Homo sapiens]                        29   8.2  
gi|164519076 transmembrane 9 superfamily protein member 4 [Homo ...    29   8.2  

>gi|38348396 hypothetical protein LOC375307 [Homo sapiens]
          Length = 387

 Score =  780 bits (2013), Expect = 0.0
 Identities = 387/387 (100%), Positives = 387/387 (100%)

Query: 1   MSSKVYSTGSRAKDHQPSGPECLPLPEANAEAIDFLSSLHKEELQMLFFSETLAMVSDTG 60
           MSSKVYSTGSRAKDHQPSGPECLPLPEANAEAIDFLSSLHKEELQMLFFSETLAMVSDTG
Sbjct: 1   MSSKVYSTGSRAKDHQPSGPECLPLPEANAEAIDFLSSLHKEELQMLFFSETLAMVSDTG 60

Query: 61  EPQGELTIEVQRGKYQEKLGMLTYCLFVHASSRGFLDKMLCGNSLLGYLSEKLELMEQHS 120
           EPQGELTIEVQRGKYQEKLGMLTYCLFVHASSRGFLDKMLCGNSLLGYLSEKLELMEQHS
Sbjct: 61  EPQGELTIEVQRGKYQEKLGMLTYCLFVHASSRGFLDKMLCGNSLLGYLSEKLELMEQHS 120

Query: 121 QDFIKFLILPMERKMSLLKQDDQLAVTRSIKEGEEVKTGVTSFPWSSIKGFISEAANLVL 180
           QDFIKFLILPMERKMSLLKQDDQLAVTRSIKEGEEVKTGVTSFPWSSIKGFISEAANLVL
Sbjct: 121 QDFIKFLILPMERKMSLLKQDDQLAVTRSIKEGEEVKTGVTSFPWSSIKGFISEAANLVL 180

Query: 181 LRVMAWRRMVPSNARFLTLDTEGKLCYLTYQNLGFQTIQVDHQQAEVFIVEQTVHAEEGI 240
           LRVMAWRRMVPSNARFLTLDTEGKLCYLTYQNLGFQTIQVDHQQAEVFIVEQTVHAEEGI
Sbjct: 181 LRVMAWRRMVPSNARFLTLDTEGKLCYLTYQNLGFQTIQVDHQQAEVFIVEQTVHAEEGI 240

Query: 241 PMSCQYYLLSDGHLAKRIQVGSPGCCIITKMPILREEDEIEPRPVFEKKPLVWEEDMELY 300
           PMSCQYYLLSDGHLAKRIQVGSPGCCIITKMPILREEDEIEPRPVFEKKPLVWEEDMELY
Sbjct: 241 PMSCQYYLLSDGHLAKRIQVGSPGCCIITKMPILREEDEIEPRPVFEKKPLVWEEDMELY 300

Query: 301 SKFLDRKEELRLGHASYLRQHPEAHALISDFLLFLLLRQPEDVVTFAAEFFGPFDPWRPS 360
           SKFLDRKEELRLGHASYLRQHPEAHALISDFLLFLLLRQPEDVVTFAAEFFGPFDPWRPS
Sbjct: 301 SKFLDRKEELRLGHASYLRQHPEAHALISDFLLFLLLRQPEDVVTFAAEFFGPFDPWRPS 360

Query: 361 SPALGSSHRPNPFRSLEPEGDARSGAA 387
           SPALGSSHRPNPFRSLEPEGDARSGAA
Sbjct: 361 SPALGSSHRPNPFRSLEPEGDARSGAA 387


>gi|222352147 RIIa domain-containing protein [Homo sapiens]
          Length = 92

 Score = 40.8 bits (94), Expect = 0.002
 Identities = 20/54 (37%), Positives = 33/54 (61%), Gaps = 2/54 (3%)

Query: 307 KEELRLGHASYLRQHPEAHALISDFLLFLLLRQPEDVVTFAAEFFGPFDPWRPS 360
           K + R+ +  YLR H E   LIS F   + L++P++++ FAA++F   DP  P+
Sbjct: 28  KIQTRIANEKYLRTHKEVEWLISGFFREIFLKRPDNILEFAADYF--TDPRLPN 79


>gi|93102424 hypothetical protein LOC23116 [Homo sapiens]
          Length = 1720

 Score = 37.4 bits (85), Expect = 0.023
 Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 2/75 (2%)

Query: 107 GYLSEKLELMEQHSQDFIKFLILPMERKMSLLKQDDQLAVTRSIKEGEEV--KTGVTSFP 164
           G+  + L      S   +KF I+P E    LL Q+D    T++++E ++V  K   +S P
Sbjct: 329 GFPEDPLPCAVTLSNSNLKFGIIPQELHSRLLDQEDYKNRTQAVEELKQVLGKFNPSSTP 388

Query: 165 WSSIKGFISEAANLV 179
            SS+ GFIS   NL+
Sbjct: 389 HSSLVGFISLLYNLL 403


>gi|4758958 cAMP-dependent protein kinase, regulatory subunit alpha
           2 [Homo sapiens]
          Length = 404

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 10/79 (12%)

Query: 316 SYLRQHPEAHALISDFLLFLLLRQPEDVVTFAAEFF-------GPFDPWRPSSPALGSSH 368
           S+++  P    L+  + + +L +QP D+V FA E+F        P      ++P     H
Sbjct: 2   SHIQIPPGLTELLQGYTVEVLRQQPPDLVEFAVEYFTRLREARAPASVLPAATPRQSLGH 61

Query: 369 ---RPNPFRSLEPEGDARS 384
               P P R  + +GD+ S
Sbjct: 62  PPPEPGPDRVADAKGDSES 80


>gi|38455427 chaperonin containing TCP1, subunit 4 (delta) [Homo
           sapiens]
          Length = 539

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 3/69 (4%)

Query: 54  AMVSDTGEPQGELTIEVQRGKYQEKL-GMLTYCLFVHASSRGFLDKMLCGNSLLGYLSEK 112
           A+++  G P+ EL + +   +Y   L GM +YC+   A +   +   L  N+ L  +S  
Sbjct: 420 ALIAGGGAPEIELALRLT--EYSRTLSGMESYCVRAFADAMEVIPSTLAENAGLNPISTV 477

Query: 113 LELMEQHSQ 121
            EL  +H+Q
Sbjct: 478 TELRNRHAQ 486


>gi|134031945 SCO-spondin [Homo sapiens]
          Length = 5147

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 1/31 (3%)

Query: 351  FGPFDPWRPSSPALGSSHRPNP-FRSLEPEG 380
            +GP+ PW P    LG SHR     R   PEG
Sbjct: 3475 WGPWGPWSPCDMCLGQSHRSRACSRPPTPEG 3505


>gi|154091020 leucine-rich repeats and calponin homology (CH) domain
           containing 2 [Homo sapiens]
          Length = 765

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 13/41 (31%), Positives = 25/41 (60%), Gaps = 1/41 (2%)

Query: 268 ITKMPILREEDEIEPRPVFEKKPLVWEEDMELYSKFLDRKE 308
           +T  P+  ++D+I+ +P  E  P++W+ +    SK + RKE
Sbjct: 523 LTWQPLENQKDQIDEQPWPESHPIIWQSEERRRSKQI-RKE 562


>gi|55770834 centromere protein F [Homo sapiens]
          Length = 3114

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 30/133 (22%), Positives = 62/133 (46%), Gaps = 12/133 (9%)

Query: 108  YLSEKLELMEQHSQDFIKFLILPMERKMSLLKQDDQLAVTRSIKEGEEVKTGVTSFPWS- 166
            +++EKL+  E+ + D +K  +  +ER++ + +++ +L +  +     EV+T  T      
Sbjct: 2137 HIAEKLKEREREN-DSLKDKVENLERELQMSEENQELVILDAENSKAEVETLKTQIEEMA 2195

Query: 167  -SIKGFISEAANLVLLRVMAWRRMVPSNARFLTLDTEGKLCYLTYQNLGFQTIQVDHQQA 225
             S+K F  +   L         R    N      + +G+L  L      F+++  + +QA
Sbjct: 2196 RSLKVFELDLVTL---------RSEKENLTKQIQEKQGQLSELDKLLSSFKSLLEEKEQA 2246

Query: 226  EVFIVEQTVHAEE 238
            E+ I E++  A E
Sbjct: 2247 EIQIKEESKTAVE 2259


>gi|164519076 transmembrane 9 superfamily protein member 4 [Homo
           sapiens]
          Length = 642

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 5/66 (7%)

Query: 87  FVHASSRGFLD--KMLCGNSL---LGYLSEKLELMEQHSQDFIKFLILPMERKMSLLKQD 141
           F H    GF D  K+   N L   L Y  E +E  ++H+   ++F ++P   ++  LK D
Sbjct: 163 FEHGYRLGFTDVNKIYLHNHLSFILYYHREDMEEDQEHTYRVVRFEVIPQSIRLEDLKAD 222

Query: 142 DQLAVT 147
           ++ + T
Sbjct: 223 EKSSCT 228


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.319    0.136    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,456,359
Number of Sequences: 37866
Number of extensions: 721981
Number of successful extensions: 1862
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1857
Number of HSP's gapped (non-prelim): 11
length of query: 387
length of database: 18,247,518
effective HSP length: 104
effective length of query: 283
effective length of database: 14,309,454
effective search space: 4049575482
effective search space used: 4049575482
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.