Guide to the Human Genome
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Name: C2orf62 Sequence: fasta or formatted (387aa) NCBI GI: 38348396
Description:

hypothetical protein LOC375307

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.9         23           2
 C cysteine            1.8          7           2
 D aspartate           4.4         17           2
 E glutamate           9.8         38           2
 F phenylalanine       5.4         21           2
 G glycine             5.9         23           1
 H histidine           2.8         11           1
 I isoleucine          4.1         16           2
 K lysine              5.2         20           2
 L leucine            12.7         49           3
 M methionine          3.4         13           1
 N asparagine          1.6          6           1
 P proline             5.9         23           1
 Q glutamine           4.9         19           2
 R arginine            5.2         20           2
 S serine              8.5         33           2
 T threonine           3.9         15           1
 V valine              4.9         19           2
 W tryptophan          1.0          4           1
 Y tyrosine            2.6         10           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC375307 
C1orf230              0.021   RIIa domain-containing protein 
FAM179B               0.016   hypothetical protein LOC23116 
PRKAR2A               0.008   cAMP-dependent protein kinase, regulatory subunit alp...
CCT4                  0.008   chaperonin containing TCP1, subunit 4 (delta) 
SSPO                  0.005   SCO-spondin 
LRCH2                 0.005   leucine-rich repeats and calponin homology (CH) dom...
CENPF                 0.005   centromere protein F 
TM9SF4                0.005   transmembrane 9 superfamily protein member 4 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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