Search of human proteins with 38202255

Search of human proteins with 38202255

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|38202255 threonyl-tRNA synthetase [Homo sapiens]
         (723 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|38202255 threonyl-tRNA synthetase [Homo sapiens]                  1496   0.0  
gi|38570111 threonyl-tRNA synthetase-like 2 [Homo sapiens]           1091   0.0  
gi|20070344 threonyl-tRNA synthetase 2, mitochondrial [Homo sapi...   776   0.0  
gi|27886570 mitochondrial ribosomal protein L39 isoform b [Homo ...    79   1e-14
gi|27886582 mitochondrial ribosomal protein L39 isoform a [Homo ...    79   1e-14
gi|62241042 glutamyl-prolyl tRNA synthetase [Homo sapiens]             37   0.064
gi|34303926 prolyl-tRNA synthetase (mitochondrial)(putative) [Ho...    37   0.084
gi|78190492 retinitis pigmentosa GTPase regulator isoform C [Hom...    33   0.71 
gi|74136883 heterogeneous nuclear ribonucleoprotein U isoform a ...    33   1.2  
gi|4501913 ADAM metallopeptidase domain 23 preproprotein [Homo s...    33   1.2  
gi|192807292 keratin 24 [Homo sapiens]                                 32   2.7  
gi|171184451 centrosome-associated protein 350 [Homo sapiens]          32   2.7  
gi|145309298 coiled-coil domain containing 16 [Homo sapiens]           31   3.5  
gi|169216514 PREDICTED: similar to paraneoplastic antigen MA2 [H...    30   6.0  
gi|169216749 PREDICTED: similar to Putative paraneoplastic antig...    30   6.0  
gi|10863997 polypyrimidine tract binding protein 2 [Homo sapiens]      30   6.0  
gi|239741074 PREDICTED: hypothetical protein XP_002342082 [Homo ...    30   7.9  

>gi|38202255 threonyl-tRNA synthetase [Homo sapiens]
          Length = 723

 Score = 1496 bits (3873), Expect = 0.0
 Identities = 723/723 (100%), Positives = 723/723 (100%)

Query: 1   MFEEKASSPSGKMGGEEKPIGAGEEKQKEGGKKKNKEGSGDGGRAELNPWPEYIYTRLEM 60
           MFEEKASSPSGKMGGEEKPIGAGEEKQKEGGKKKNKEGSGDGGRAELNPWPEYIYTRLEM
Sbjct: 1   MFEEKASSPSGKMGGEEKPIGAGEEKQKEGGKKKNKEGSGDGGRAELNPWPEYIYTRLEM 60

Query: 61  YNILKAEHDSILAEKAEKDSKPIKVTLPDGKQVDAESWKTTPYQIACGISQGLADNTVIA 120
           YNILKAEHDSILAEKAEKDSKPIKVTLPDGKQVDAESWKTTPYQIACGISQGLADNTVIA
Sbjct: 61  YNILKAEHDSILAEKAEKDSKPIKVTLPDGKQVDAESWKTTPYQIACGISQGLADNTVIA 120

Query: 121 KVNNVVWDLDRPLEEDCTLELLKFEDEEAQAVYWHSSAHIMGEAMERVYGGCLCYGPPIE 180
           KVNNVVWDLDRPLEEDCTLELLKFEDEEAQAVYWHSSAHIMGEAMERVYGGCLCYGPPIE
Sbjct: 121 KVNNVVWDLDRPLEEDCTLELLKFEDEEAQAVYWHSSAHIMGEAMERVYGGCLCYGPPIE 180

Query: 181 NGFYYDMYLEEGGVSSNDFSSLEALCKKIIKEKQAFERLEVKKETLLAMFKYNKFKCRIL 240
           NGFYYDMYLEEGGVSSNDFSSLEALCKKIIKEKQAFERLEVKKETLLAMFKYNKFKCRIL
Sbjct: 181 NGFYYDMYLEEGGVSSNDFSSLEALCKKIIKEKQAFERLEVKKETLLAMFKYNKFKCRIL 240

Query: 241 NEKVNTPTTTVYRCGPLIDLCRGPHVRHTGKIKALKIHKNSSTYWEGKADMETLQRIYGI 300
           NEKVNTPTTTVYRCGPLIDLCRGPHVRHTGKIKALKIHKNSSTYWEGKADMETLQRIYGI
Sbjct: 241 NEKVNTPTTTVYRCGPLIDLCRGPHVRHTGKIKALKIHKNSSTYWEGKADMETLQRIYGI 300

Query: 301 SFPDPKMLKEWEKFQEEAKNRDHRKIGRDQELYFFHELSPGSCFFLPKGAYIYNALIEFI 360
           SFPDPKMLKEWEKFQEEAKNRDHRKIGRDQELYFFHELSPGSCFFLPKGAYIYNALIEFI
Sbjct: 301 SFPDPKMLKEWEKFQEEAKNRDHRKIGRDQELYFFHELSPGSCFFLPKGAYIYNALIEFI 360

Query: 361 RSEYRKRGFQEVVTPNIFNSRLWMTSGHWQHYSENMFSFEVEKELFALKPMNCPGHCLMF 420
           RSEYRKRGFQEVVTPNIFNSRLWMTSGHWQHYSENMFSFEVEKELFALKPMNCPGHCLMF
Sbjct: 361 RSEYRKRGFQEVVTPNIFNSRLWMTSGHWQHYSENMFSFEVEKELFALKPMNCPGHCLMF 420

Query: 421 DHRPRSWRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCAMEQIEDEIKGCL 480
           DHRPRSWRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCAMEQIEDEIKGCL
Sbjct: 421 DHRPRSWRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCAMEQIEDEIKGCL 480

Query: 481 DFLRTVYSVFGFSFKLNLSTRPEKFLGDIEVWDQAEKQLENSLNEFGEKWELNSGDGAFY 540
           DFLRTVYSVFGFSFKLNLSTRPEKFLGDIEVWDQAEKQLENSLNEFGEKWELNSGDGAFY
Sbjct: 481 DFLRTVYSVFGFSFKLNLSTRPEKFLGDIEVWDQAEKQLENSLNEFGEKWELNSGDGAFY 540

Query: 541 GPKIDIQIKDAIGRYHQCATIQLDFQLPIRFNLTYVSHDGDDKKRPVIVHRAILGSVERM 600
           GPKIDIQIKDAIGRYHQCATIQLDFQLPIRFNLTYVSHDGDDKKRPVIVHRAILGSVERM
Sbjct: 541 GPKIDIQIKDAIGRYHQCATIQLDFQLPIRFNLTYVSHDGDDKKRPVIVHRAILGSVERM 600

Query: 601 IAILTENYGGKWPFWLSPRQVMVVPVGPTCDEYAQKVRQQFHDAKFMADIDLDPGCTLNK 660
           IAILTENYGGKWPFWLSPRQVMVVPVGPTCDEYAQKVRQQFHDAKFMADIDLDPGCTLNK
Sbjct: 601 IAILTENYGGKWPFWLSPRQVMVVPVGPTCDEYAQKVRQQFHDAKFMADIDLDPGCTLNK 660

Query: 661 KIRNAQLAQYNFILVVGEKEKISGTVNIRTRDNKVHGERTISETIERLQQLKEFRSKQAE 720
           KIRNAQLAQYNFILVVGEKEKISGTVNIRTRDNKVHGERTISETIERLQQLKEFRSKQAE
Sbjct: 661 KIRNAQLAQYNFILVVGEKEKISGTVNIRTRDNKVHGERTISETIERLQQLKEFRSKQAE 720

Query: 721 EEF 723
           EEF
Sbjct: 721 EEF 723


>gi|38570111 threonyl-tRNA synthetase-like 2 [Homo sapiens]
          Length = 802

 Score = 1091 bits (2822), Expect = 0.0
 Identities = 518/722 (71%), Positives = 606/722 (83%), Gaps = 7/722 (0%)

Query: 4   EKASSPSGKMGGEEKPIGAGEEKQKEGGKKKNKEGSGDGGRAELNPWPEYIYTRLEMYNI 63
           E A   + +  G + P    ++K  +  KKK KE   D   +E+   P +I  RL+++ I
Sbjct: 86  ESAELEAAQEAGAQPPPSQSQDKDMK--KKKMKESEAD---SEVKHQPIFIKERLKLFEI 140

Query: 64  LKAEHDSILAEKAEKD--SKPIKVTLPDGKQVDAESWKTTPYQIACGISQGLADNTVIAK 121
           LK +H  +LA   +K   S  I V + DG+ V  E WKTTPYQ+A  ISQ LA++TVIAK
Sbjct: 141 LKKDHQLLLAIYGKKGDTSNIITVRVADGQTVQGEVWKTTPYQVAAEISQELAESTVIAK 200

Query: 122 VNNVVWDLDRPLEEDCTLELLKFEDEEAQAVYWHSSAHIMGEAMERVYGGCLCYGPPIEN 181
           VN  +WDLDRPLE D +LELL F++EEAQAVYWHSSAHI+GEAME  YGG LCYGPPIEN
Sbjct: 201 VNGELWDLDRPLEGDSSLELLTFDNEEAQAVYWHSSAHILGEAMELYYGGHLCYGPPIEN 260

Query: 182 GFYYDMYLEEGGVSSNDFSSLEALCKKIIKEKQAFERLEVKKETLLAMFKYNKFKCRILN 241
           GFYYDM++E+  VSS + S+LE +CK IIKEKQ FERLEV KE LL MFKYNKFKCRILN
Sbjct: 261 GFYYDMFIEDRAVSSTELSALENICKAIIKEKQPFERLEVSKEILLEMFKYNKFKCRILN 320

Query: 242 EKVNTPTTTVYRCGPLIDLCRGPHVRHTGKIKALKIHKNSSTYWEGKADMETLQRIYGIS 301
           EKVNT TTTVYRCGPLIDLC+GPHVRHTGKIK +KI KNSSTYWEG  +METLQRIYGIS
Sbjct: 321 EKVNTATTTVYRCGPLIDLCKGPHVRHTGKIKTIKIFKNSSTYWEGNPEMETLQRIYGIS 380

Query: 302 FPDPKMLKEWEKFQEEAKNRDHRKIGRDQELYFFHELSPGSCFFLPKGAYIYNALIEFIR 361
           FPD KM+++WEKFQEEAKNRDHRKIG++QEL+FFH+LSPGSCFFLP+GA+IYN L +FIR
Sbjct: 381 FPDNKMMRDWEKFQEEAKNRDHRKIGKEQELFFFHDLSPGSCFFLPRGAFIYNTLTDFIR 440

Query: 362 SEYRKRGFQEVVTPNIFNSRLWMTSGHWQHYSENMFSFEVEKELFALKPMNCPGHCLMFD 421
            EY KR F EV++PN++NS+LW  SGHWQHYSENMF+FE+EK+ FALKPMNCPGHCLMF 
Sbjct: 441 EEYHKRDFTEVLSPNMYNSKLWEASGHWQHYSENMFTFEIEKDTFALKPMNCPGHCLMFA 500

Query: 422 HRPRSWRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCAMEQIEDEIKGCLD 481
           HRPRSWRE+P+R ADFGVLHRNELSG L+GLTRVRRFQQDDAHIFC +EQIE+EIKGCL 
Sbjct: 501 HRPRSWREMPIRFADFGVLHRNELSGTLSGLTRVRRFQQDDAHIFCTVEQIEEEIKGCLQ 560

Query: 482 FLRTVYSVFGFSFKLNLSTRPEKFLGDIEVWDQAEKQLENSLNEFGEKWELNSGDGAFYG 541
           FL++VYS FGFSF+LNLSTRPE FLG+IE+W++AEKQL+NSL +FGE W++N GDGAFYG
Sbjct: 561 FLQSVYSTFGFSFQLNLSTRPENFLGEIEMWNEAEKQLQNSLMDFGEPWKMNPGDGAFYG 620

Query: 542 PKIDIQIKDAIGRYHQCATIQLDFQLPIRFNLTYVSHDGDDKKRPVIVHRAILGSVERMI 601
           PKIDI+IKDAIGRYHQCATIQLDFQLPIRFNLTYVS DGDDKKRPVI+HRAILGSVERMI
Sbjct: 621 PKIDIKIKDAIGRYHQCATIQLDFQLPIRFNLTYVSKDGDDKKRPVIIHRAILGSVERMI 680

Query: 602 AILTENYGGKWPFWLSPRQVMVVPVGPTCDEYAQKVRQQFHDAKFMADIDLDPGCTLNKK 661
           AIL+ENYGGKWPFWLSPRQVMV+PVGPTC++YA +V  +F +  FMAD+DLD  CTLNKK
Sbjct: 681 AILSENYGGKWPFWLSPRQVMVIPVGPTCEKYALQVSSEFFEEGFMADVDLDHSCTLNKK 740

Query: 662 IRNAQLAQYNFILVVGEKEKISGTVNIRTRDNKVHGERTISETIERLQQLKEFRSKQAEE 721
           IRNAQLAQYNFILVVGEKEKI   VN+RTRDNK+HGE  ++  I++L+ L++ R+  AEE
Sbjct: 741 IRNAQLAQYNFILVVGEKEKIDNAVNVRTRDNKIHGEILVTSAIDKLKNLRKTRTLNAEE 800

Query: 722 EF 723
            F
Sbjct: 801 AF 802


>gi|20070344 threonyl-tRNA synthetase 2, mitochondrial [Homo
           sapiens]
          Length = 718

 Score =  776 bits (2005), Expect = 0.0
 Identities = 374/691 (54%), Positives = 488/691 (70%), Gaps = 19/691 (2%)

Query: 51  PEYIYTRLEMYNILKAEHDSILAEKAEKDSKPIKVTLPDGKQVDAESWKTTPYQIACGIS 110
           P ++  RL ++  L A     LA  A+K+ + IK++LP G+++DA +W TTPYQ+A  IS
Sbjct: 29  PRWLAERLGLFEELWAAQVKRLASMAQKEPRTIKISLPGGQKIDAVAWNTTPYQLARQIS 88

Query: 111 QGLADNTVIAKVNNVVWDLDRPLEEDCTLELLKFEDEEAQAVYWHSSAHIMGEAMERVYG 170
             LAD  V A+VN   +DL+RPLE D  L  L F+  E +AV+WHSS H++G A E+  G
Sbjct: 89  STLADTAVAAQVNGEPYDLERPLETDSDLRFLTFDSPEGKAVFWHSSTHVLGAAAEQFLG 148

Query: 171 GCLCYGPPIENGFYYDMYL-EEGGVSSNDFSSLEALCKKIIKEKQAFERLEVKKETLLAM 229
             LC GP  E GFY+D +L +E  +  ++   LE +C+++    + F RLE  ++ L  +
Sbjct: 149 AVLCRGPSTEYGFYHDFFLGKERTIRGSELPVLERICQELTAAARPFRRLEASRDQLRQL 208

Query: 230 FKYNKFKCRILNEKVNTPTTTVYRCGPLIDLCRGPHVRHTGKIKALKIHKNSSTYWEGKA 289
           FK N FK  ++ EKV  PT TVY CG L+DLC+GPH+RHTG+I  LK+  NSS+ W    
Sbjct: 209 FKDNPFKLHLIEEKVTGPTATVYGCGTLVDLCQGPHLRHTGQIGGLKLLSNSSSLWRSSG 268

Query: 290 DMETLQRIYGISFPDPKMLKEWEKFQEEAKNRDHRKIGRDQELYFFHELSPGSCFFLPKG 349
             ETLQR+ GISFP  ++L+ WE ++EEA+ RDHR+IG++QEL+FFHELSPGSCFFLP+G
Sbjct: 269 APETLQRVSGISFPTTELLRVWEAWREEAELRDHRRIGKEQELFFFHELSPGSCFFLPRG 328

Query: 350 AYIYNALIEFIRSEYRKRGFQEVVTPNIFNSRLWMTSGHWQHYSENMFSFEVE------- 402
             +YNAL+ FIR+EY  RGF EV TP +F+++LW  SGHW+HY E+MF+ +         
Sbjct: 329 TRVYNALVAFIRAEYAHRGFSEVKTPTLFSTKLWEQSGHWEHYQEDMFAVQPPGSDRPPS 388

Query: 403 ----------KELFALKPMNCPGHCLMFDHRPRSWRELPLRLADFGVLHRNELSGALTGL 452
                      +  ALKPMNCP HCLMF HRPRSWRELPLRLADFG LHR E SG L GL
Sbjct: 389 SQSDDSTRHITDTLALKPMNCPAHCLMFAHRPRSWRELPLRLADFGALHRAEASGGLGGL 448

Query: 453 TRVRRFQQDDAHIFCAMEQIEDEIKGCLDFLRTVYSVFGFSFKLNLSTRPEKFLGDIEVW 512
           TR+R FQQDDAHIFC  +Q+E EI+ CLDFLR+VY+V GFSF+L LSTRP  FLGD  +W
Sbjct: 449 TRLRCFQQDDAHIFCTTDQLEAEIQSCLDFLRSVYAVLGFSFRLALSTRPSGFLGDPCLW 508

Query: 513 DQAEKQLENSLNEFGEKWELNSGDGAFYGPKIDIQIKDAIGRYHQCATIQLDFQLPIRFN 572
           DQAE+ L+ +L EFGE W+LNSGDGAFYGPKID+ + DA+GR HQC TIQLDFQLP+RF+
Sbjct: 509 DQAEQVLKQALKEFGEPWDLNSGDGAFYGPKIDVHLHDALGRPHQCGTIQLDFQLPLRFD 568

Query: 573 LTYVSHDGDDKKRPVIVHRAILGSVERMIAILTENYGGKWPFWLSPRQVMVVPVGPTCDE 632
           L Y    G   +RPV++HRA+LGSVER++ +L E+ GGKWP WLSP QV+V+PVG   +E
Sbjct: 569 LQYKGQAG-ALERPVLIHRAVLGSVERLLGVLAESCGGKWPLWLSPFQVVVIPVGSEQEE 627

Query: 633 YAQKVRQQFHDAKFMADIDLDPGCTLNKKIRNAQLAQYNFILVVGEKEKISGTVNIRTRD 692
           YA++ +Q    A  ++D+D D G TL+++IR AQLA YNF  VVG+KE+   TVNIRTRD
Sbjct: 628 YAKEAQQSLRAAGLVSDLDADSGLTLSRRIRRAQLAHYNFQFVVGQKEQSKRTVNIRTRD 687

Query: 693 NKVHGERTISETIERLQQLKEFRSKQAEEEF 723
           N+  GE  + E ++RL +L+  R   AEE F
Sbjct: 688 NRRLGEWDLPEAVQRLVELQNTRVPNAEEIF 718


>gi|27886570 mitochondrial ribosomal protein L39 isoform b [Homo
           sapiens]
          Length = 353

 Score = 79.3 bits (194), Expect = 1e-14
 Identities = 69/279 (24%), Positives = 120/279 (43%), Gaps = 28/279 (10%)

Query: 45  AELNPWPEYIYTRLEMYNILKAEHDSILAEKAEKDSKPIKVTLPDGKQVDAESWKTTPYQ 104
           ++L+P  E    R +++N  KA   S+     + + K +  T P G         +TPY 
Sbjct: 33  SQLSP-TELTEMRNDLFNKEKARQLSLTPRTEKIEVKHVGKTDP-GTVFVMNKNISTPYS 90

Query: 105 IACGISQGLADNTVIAKVNNVVWDLDRPLEEDCTLELLKFED---EEAQAVYWHSSAHIM 161
            A  +S+     +++A V+   WD+ +PL + C ++ L F+D    E    YW S A +M
Sbjct: 91  CAMHLSEWYCRKSILALVDGQPWDMYKPLTKSCEIKFLTFKDCDPGEVNKAYWRSCAMMM 150

Query: 162 GEAMERVYGGCLCYG-------PPIENGFYYDMY----LEEGGVSSNDFSSLEALCKKII 210
           G  +ER +              P I   F YD+     L+E   +  +  S       +I
Sbjct: 151 GCVIERAFKDEYMVNLVRAPEVPVISGAFCYDVVLDSKLDEWMPTKENLRSFTKDAHALI 210

Query: 211 KEKQAFERLEVKKETLLAMFKYNKFKCRILNEKVNTPTTTV---YRCGPLIDLCRGPHVR 267
            +   FE LEV+ +  L +F+++K+K   + EK +     +   +R G  ID+  GP + 
Sbjct: 211 YKDLPFETLEVEAKVALEIFQHSKYKVDFIEEKASQNPERIVKLHRIGDFIDVSEGPLIP 270

Query: 268 HTG---KIKALKIHKNSSTYWEGKADMETLQRIYGISFP 303
            T    + +   +H    T          ++R  G+S P
Sbjct: 271 RTSICFQYEVSAVHNLQPT------QPSLIRRFQGVSLP 303


>gi|27886582 mitochondrial ribosomal protein L39 isoform a [Homo
           sapiens]
          Length = 338

 Score = 79.3 bits (194), Expect = 1e-14
 Identities = 69/279 (24%), Positives = 120/279 (43%), Gaps = 28/279 (10%)

Query: 45  AELNPWPEYIYTRLEMYNILKAEHDSILAEKAEKDSKPIKVTLPDGKQVDAESWKTTPYQ 104
           ++L+P  E    R +++N  KA   S+     + + K +  T P G         +TPY 
Sbjct: 33  SQLSP-TELTEMRNDLFNKEKARQLSLTPRTEKIEVKHVGKTDP-GTVFVMNKNISTPYS 90

Query: 105 IACGISQGLADNTVIAKVNNVVWDLDRPLEEDCTLELLKFED---EEAQAVYWHSSAHIM 161
            A  +S+     +++A V+   WD+ +PL + C ++ L F+D    E    YW S A +M
Sbjct: 91  CAMHLSEWYCRKSILALVDGQPWDMYKPLTKSCEIKFLTFKDCDPGEVNKAYWRSCAMMM 150

Query: 162 GEAMERVYGGCLCYG-------PPIENGFYYDMY----LEEGGVSSNDFSSLEALCKKII 210
           G  +ER +              P I   F YD+     L+E   +  +  S       +I
Sbjct: 151 GCVIERAFKDEYMVNLVRAPEVPVISGAFCYDVVLDSKLDEWMPTKENLRSFTKDAHALI 210

Query: 211 KEKQAFERLEVKKETLLAMFKYNKFKCRILNEKVNTPTTTV---YRCGPLIDLCRGPHVR 267
            +   FE LEV+ +  L +F+++K+K   + EK +     +   +R G  ID+  GP + 
Sbjct: 211 YKDLPFETLEVEAKVALEIFQHSKYKVDFIEEKASQNPERIVKLHRIGDFIDVSEGPLIP 270

Query: 268 HTG---KIKALKIHKNSSTYWEGKADMETLQRIYGISFP 303
            T    + +   +H    T          ++R  G+S P
Sbjct: 271 RTSICFQYEVSAVHNLQPT------QPSLIRRFQGVSLP 303


>gi|62241042 glutamyl-prolyl tRNA synthetase [Homo sapiens]
          Length = 1512

 Score = 37.0 bits (84), Expect = 0.064
 Identities = 47/186 (25%), Positives = 78/186 (41%), Gaps = 12/186 (6%)

Query: 331  ELYFFHELSPGSCFFLPKGAY-IYNALIEFIRSEYRKRGFQEVVTPN-IFNSRLWMTSGH 388
            E+  +H++S   C+ L   AY I+ A+ +F  +E +K G +    P  +  S L     H
Sbjct: 1036 EMIEYHDIS--GCYILRPWAYAIWEAIKDFFDAEIKKLGVENCYFPMFVSQSALEKEKTH 1093

Query: 389  WQHYSENMF----SFEVE-KELFALKPMNCPGHCLMFDHRPRSWRELPLRLADFGVLHRN 443
               ++  +     S + E  E  A++P +       +    +S R+LP++L  +  + R 
Sbjct: 1094 VADFAPEVAWVTRSGKTELAEPIAIRPTSETVMYPAYAKWVQSHRDLPIKLNQWCNVVRW 1153

Query: 444  ELSGALTGLTRVRRFQQDDAH-IFCAMEQIEDEIKGCLDFLRTVY-SVFGFSFKLNLSTR 501
            E       L R R F   + H  F  ME+  +E+   LD    VY  +          T 
Sbjct: 1154 EFKHPQPFL-RTREFLWQEGHSAFATMEEAAEEVLQILDLYAQVYEELLAIPVVKGRKTE 1212

Query: 502  PEKFLG 507
             EKF G
Sbjct: 1213 KEKFAG 1218


>gi|34303926 prolyl-tRNA synthetase (mitochondrial)(putative) [Homo
           sapiens]
          Length = 475

 Score = 36.6 bits (83), Expect = 0.084
 Identities = 35/139 (25%), Positives = 52/139 (37%), Gaps = 21/139 (15%)

Query: 339 SPGSCFFLPKGAYIYNALIEFIRSEYRKRGFQEVVTPNIFNSRLWMTSGHWQHYSENMFS 398
           SPG    LP        L+  I  E +  G Q+V  P++  + LW  +  W         
Sbjct: 84  SPGCYHLLPYTVRAMEKLVRVIDQEMQAIGGQKVNMPSLSPAELWQATNRWD-------- 135

Query: 399 FEVEKELFALKPMNCPGHCLMFDH-----------RPRSWRELPLRLADFGVLHRNELSG 447
             + KEL  L+  +   +CL   H           +  S+++LP  L       R+E   
Sbjct: 136 -LMGKELLRLRDRHGKEYCLGPTHEEAITALIASQKKLSYKQLPFLLYQVTRKFRDEPRP 194

Query: 448 ALTGLTRVRRFQQDDAHIF 466
              GL R R F   D + F
Sbjct: 195 RF-GLLRGREFYMKDMYTF 212


>gi|78190492 retinitis pigmentosa GTPase regulator isoform C [Homo
           sapiens]
          Length = 1152

 Score = 33.5 bits (75), Expect = 0.71
 Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 1/45 (2%)

Query: 3   EEKASSPSGKMGGEEKPIGAGEEKQKEG-GKKKNKEGSGDGGRAE 46
           E +     G+  GEE+  G GEE++ EG G+++ +EG G+G   E
Sbjct: 892 EGEGEEEEGEGEGEEEGEGEGEEEEGEGKGEEEGEEGEGEGEEEE 936



 Score = 31.2 bits (69), Expect = 3.5
 Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 3/47 (6%)

Query: 3   EEKASSPSGK--MGGEEKPIGAGEEKQKEG-GKKKNKEGSGDGGRAE 46
           E K    +GK   G EE   G GEE++ EG G++K + G  +GG  E
Sbjct: 774 ERKKEERAGKEEKGEEEGDQGEGEEEETEGRGEEKEEGGEVEGGEVE 820



 Score = 31.2 bits (69), Expect = 3.5
 Identities = 15/42 (35%), Positives = 24/42 (57%)

Query: 3    EEKASSPSGKMGGEEKPIGAGEEKQKEGGKKKNKEGSGDGGR 44
            EE+     G++ GEE      EE+ +E G+++ KEG G+  R
Sbjct: 1015 EEEEGEVEGEVEGEEGEGEGEEEEGEEEGEEREKEGEGEENR 1056



 Score = 30.4 bits (67), Expect = 6.0
 Identities = 15/34 (44%), Positives = 23/34 (67%), Gaps = 1/34 (2%)

Query: 14  GGEEKPIGAGEEKQKEG-GKKKNKEGSGDGGRAE 46
           G EE+  G GEE+ +EG G+++ +EG G+G   E
Sbjct: 849 GEEEEGEGKGEEEGEEGEGEEEGEEGEGEGEEEE 882



 Score = 30.0 bits (66), Expect = 7.9
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 3/44 (6%)

Query: 3   EEKASSPSGKMGGEEKPIGAGEEKQKEGGKKKNKEGSGDGGRAE 46
           EE+     G+  GEE   G GE +++EG  +  +EG G+G   E
Sbjct: 859 EEEGEEGEGEEEGEE---GEGEGEEEEGEGEGEEEGEGEGEEEE 899



 Score = 30.0 bits (66), Expect = 7.9
 Identities = 15/44 (34%), Positives = 23/44 (52%)

Query: 3   EEKASSPSGKMGGEEKPIGAGEEKQKEGGKKKNKEGSGDGGRAE 46
           E +     G+  GEE+  G GEE++ EG  ++  EG G+    E
Sbjct: 875 EGEGEEEEGEGEGEEEGEGEGEEEEGEGEGEEEGEGEGEEEEGE 918


>gi|74136883 heterogeneous nuclear ribonucleoprotein U isoform a
           [Homo sapiens]
          Length = 825

 Score = 32.7 bits (73), Expect = 1.2
 Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 1/40 (2%)

Query: 5   KASSPSGKMGGEEKPIGAGEEKQKEGGKKKNKEGSGDGGR 44
           K+S P+        P GA + +Q+ GGKKK  EG G GGR
Sbjct: 186 KSSGPTSLFAVTVAPPGARQGQQQAGGKKKA-EGGGGGGR 224


>gi|4501913 ADAM metallopeptidase domain 23 preproprotein [Homo
           sapiens]
          Length = 832

 Score = 32.7 bits (73), Expect = 1.2
 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 5/53 (9%)

Query: 578 HDGDDKKRPVIVHRAILGSVERMIAILTENYGGKWPF-----WLSPRQVMVVP 625
           HD     RP I+ + + G   + +  LT   G +WPF     WL  R+  V P
Sbjct: 238 HDEKSTGRPHIIQKTLAGQYSKQMKNLTMERGDQWPFLSELQWLKRRKRAVNP 290


>gi|192807292 keratin 24 [Homo sapiens]
          Length = 525

 Score = 31.6 bits (70), Expect = 2.7
 Identities = 14/41 (34%), Positives = 23/41 (56%)

Query: 497 NLSTRPEKFLGDIEVWDQAEKQLENSLNEFGEKWELNSGDG 537
           NL+ R   +L  +   ++A   LEN + E+ +K+   SGDG
Sbjct: 146 NLNDRLANYLDKVRALEEANTDLENKIKEWYDKYGPGSGDG 186


>gi|171184451 centrosome-associated protein 350 [Homo sapiens]
          Length = 3117

 Score = 31.6 bits (70), Expect = 2.7
 Identities = 21/89 (23%), Positives = 43/89 (48%), Gaps = 9/89 (10%)

Query: 4   EKASSPSGKMGGEEKPIGAGEEKQKEGGKKKNKEGSGDGGRAELNPWPEYIYTRLEMYNI 63
           +K   P+ +M  +E+   + +     GG+++  +  G  GRAE +P  + ++  L+    
Sbjct: 434 KKILGPAPRMEPKEQRTASSDR----GGRERTAKSGGHIGRAESDPRLDVLHRHLQ---- 485

Query: 64  LKAEHDSILAEKAEKDSKPIKVTLPDGKQ 92
            +    S    ++E + K +  +LPD KQ
Sbjct: 486 -RNSERSRSKSRSENNIKKLASSLPDNKQ 513


>gi|145309298 coiled-coil domain containing 16 [Homo sapiens]
          Length = 372

 Score = 31.2 bits (69), Expect = 3.5
 Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 9/64 (14%)

Query: 262 RGPHVRHTGKIKALKIHKNSSTYWEGKA---------DMETLQRIYGISFPDPKMLKEWE 312
           + P + H+G I+  +IH+      E  A         D E   R+  +  P  +M KEW+
Sbjct: 216 KAPIIPHSGSIEKAEIHEKVVERRENTAEALPEGFFDDPEVDARVRKVDAPKDQMDKEWD 275

Query: 313 KFQE 316
           +FQ+
Sbjct: 276 EFQK 279


>gi|169216514 PREDICTED: similar to paraneoplastic antigen MA2 [Homo
           sapiens]
          Length = 340

 Score = 30.4 bits (67), Expect = 6.0
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 6/50 (12%)

Query: 3   EEKASSPSGKMG-----GEEKPIGAGE-EKQKEGGKKKNKEGSGDGGRAE 46
           EE+ +   G  G     GE   +G GE E   EGG     EG+G+GG  +
Sbjct: 114 EEEEAGDGGAAGAAGAIGETGAVGKGEAEATGEGGSASEAEGAGEGGAGD 163


>gi|169216749 PREDICTED: similar to Putative paraneoplastic
           antigen-like protein 6B-like protein [Homo sapiens]
          Length = 340

 Score = 30.4 bits (67), Expect = 6.0
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 6/50 (12%)

Query: 3   EEKASSPSGKMG-----GEEKPIGAGE-EKQKEGGKKKNKEGSGDGGRAE 46
           EE+ +   G  G     GE   +G GE E   EGG     EG+G+GG  +
Sbjct: 114 EEEEAGDGGAAGAAGAIGETGAVGKGEAEATGEGGSASEAEGAGEGGAGD 163


>gi|10863997 polypyrimidine tract binding protein 2 [Homo sapiens]
          Length = 531

 Score = 30.4 bits (67), Expect = 6.0
 Identities = 24/107 (22%), Positives = 40/107 (37%), Gaps = 25/107 (23%)

Query: 480 LDFLRTVYSVFGFSFKLNLSTRPEKFLGDIEVWDQAEKQLENSLNEFGEKWELNSGDGAF 539
           LD L  ++S FG   K+   T+  +F                +L ++G+         A 
Sbjct: 194 LDVLHQIFSKFGAVLKIITFTKNNQF---------------QALLQYGDPVNAQQAKLAL 238

Query: 540 YGPKIDIQIKDAIGRYHQCATIQLDFQLPIRFNLTYVSHDGDDKKRP 586
            G  I          Y+ C T+++DF   +  N+ Y +    D  RP
Sbjct: 239 DGQNI----------YNACCTLRIDFSKLVNLNVKYNNDKSRDYTRP 275


>gi|239741074 PREDICTED: hypothetical protein XP_002342082 [Homo
          sapiens]
          Length = 130

 Score = 30.0 bits (66), Expect = 7.9
 Identities = 12/33 (36%), Positives = 20/33 (60%)

Query: 6  ASSPSGKMGGEEKPIGAGEEKQKEGGKKKNKEG 38
          +S  SG  GGE + +G+G  + + GG+ +  EG
Sbjct: 62 SSGESGSQGGEVRRLGSGGGQNRGGGRDRGHEG 94


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.319    0.137    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,551,480
Number of Sequences: 37866
Number of extensions: 1395528
Number of successful extensions: 4228
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 4147
Number of HSP's gapped (non-prelim): 65
length of query: 723
length of database: 18,247,518
effective HSP length: 110
effective length of query: 613
effective length of database: 14,082,258
effective search space: 8632424154
effective search space used: 8632424154
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 66 (30.0 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.