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Search of human proteins with 38201680
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|38201680 meiotic recombination protein SPO11 isoform b [Homo
sapiens]
(358 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|38201680 meiotic recombination protein SPO11 isoform b [Homo ... 718 0.0
gi|6912680 meiotic recombination protein SPO11 isoform a [Homo s... 698 0.0
gi|14270505 protocadherin gamma subfamily B, 5 isoform 2 precurs... 32 0.67
gi|11128031 protocadherin gamma subfamily B, 5 isoform 1 precurs... 32 0.67
gi|13435366 desmocollin 2 isoform Dsc2b preproprotein [Homo sapi... 30 2.6
gi|13435364 desmocollin 2 isoform Dsc2a preproprotein [Homo sapi... 30 2.6
gi|11128035 protocadherin gamma subfamily B, 2 isoform 1 precurs... 29 5.7
gi|14270490 protocadherin gamma subfamily B, 1 isoform 2 precurs... 29 5.7
gi|11128029 protocadherin gamma subfamily B, 6 isoform 1 precurs... 29 5.7
gi|14270502 protocadherin gamma subfamily B, 6 isoform 2 precurs... 29 5.7
gi|11128037 protocadherin gamma subfamily B, 1 isoform 1 precurs... 29 5.7
gi|14270493 protocadherin gamma subfamily B, 2 isoform 2 precurs... 29 5.7
>gi|38201680 meiotic recombination protein SPO11 isoform b [Homo
sapiens]
Length = 358
Score = 718 bits (1853), Expect = 0.0
Identities = 358/358 (100%), Positives = 358/358 (100%)
Query: 1 MAFAPMGPEASFFDVLDRHRESLLAALRRGGREPPTGGSRLASRFEDSVGLQMVSHCTTR 60
MAFAPMGPEASFFDVLDRHRESLLAALRRGGREPPTGGSRLASRFEDSVGLQMVSHCTTR
Sbjct: 1 MAFAPMGPEASFFDVLDRHRESLLAALRRGGREPPTGGSRLASRFEDSVGLQMVSHCTTR 60
Query: 61 KIKSDSPKSAQKFSLILKILSMIYKLVQSNTYATKRDIYYTDSQLFGNQTVVDNIINDIS 120
KIKSDSPKSAQKFSLILKILSMIYKLVQSNTYATKRDIYYTDSQLFGNQTVVDNIINDIS
Sbjct: 61 KIKSDSPKSAQKFSLILKILSMIYKLVQSNTYATKRDIYYTDSQLFGNQTVVDNIINDIS 120
Query: 121 CMLKVSRRSLHILSTSKGLIAGNLRYIEEDGTKVNCTCGATAVAVPSNIQGIRNLVTDAK 180
CMLKVSRRSLHILSTSKGLIAGNLRYIEEDGTKVNCTCGATAVAVPSNIQGIRNLVTDAK
Sbjct: 121 CMLKVSRRSLHILSTSKGLIAGNLRYIEEDGTKVNCTCGATAVAVPSNIQGIRNLVTDAK 180
Query: 181 FVLIVEKDATFQRLLDDNFCNKLSPCIMITGKGVPDLNTRLLVKKLWDTFHVPVFTLVDA 240
FVLIVEKDATFQRLLDDNFCNKLSPCIMITGKGVPDLNTRLLVKKLWDTFHVPVFTLVDA
Sbjct: 181 FVLIVEKDATFQRLLDDNFCNKLSPCIMITGKGVPDLNTRLLVKKLWDTFHVPVFTLVDA 240
Query: 241 DPHGIEIMCIYKYGSMSMSFEAHHLTVPAIRWLGLLPSDLKRLNVPKDSLIPLTKRDQMK 300
DPHGIEIMCIYKYGSMSMSFEAHHLTVPAIRWLGLLPSDLKRLNVPKDSLIPLTKRDQMK
Sbjct: 241 DPHGIEIMCIYKYGSMSMSFEAHHLTVPAIRWLGLLPSDLKRLNVPKDSLIPLTKRDQMK 300
Query: 301 LDSILRRPYVTCQPFWRKEMEIMADSKMKAEIQALTFLSSDYLSRVYLPNKLKFGGWI 358
LDSILRRPYVTCQPFWRKEMEIMADSKMKAEIQALTFLSSDYLSRVYLPNKLKFGGWI
Sbjct: 301 LDSILRRPYVTCQPFWRKEMEIMADSKMKAEIQALTFLSSDYLSRVYLPNKLKFGGWI 358
>gi|6912680 meiotic recombination protein SPO11 isoform a [Homo
sapiens]
Length = 396
Score = 698 bits (1801), Expect = 0.0
Identities = 357/396 (90%), Positives = 358/396 (90%), Gaps = 38/396 (9%)
Query: 1 MAFAPMGPEASFFDVLDRHRESLLAALRRGGREPPTGGSRLAS----------------- 43
MAFAPMGPEASFFDVLDRHRESLLAALRRGGREPPTGGSRLAS
Sbjct: 1 MAFAPMGPEASFFDVLDRHRESLLAALRRGGREPPTGGSRLASSSEVLASIENIIQDIIT 60
Query: 44 ---------------------RFEDSVGLQMVSHCTTRKIKSDSPKSAQKFSLILKILSM 82
+FEDSVGLQMVSHCTTRKIKSDSPKSAQKFSLILKILSM
Sbjct: 61 SLARNEAPAFTIDNRSSWENIKFEDSVGLQMVSHCTTRKIKSDSPKSAQKFSLILKILSM 120
Query: 83 IYKLVQSNTYATKRDIYYTDSQLFGNQTVVDNIINDISCMLKVSRRSLHILSTSKGLIAG 142
IYKLVQSNTYATKRDIYYTDSQLFGNQTVVDNIINDISCMLKVSRRSLHILSTSKGLIAG
Sbjct: 121 IYKLVQSNTYATKRDIYYTDSQLFGNQTVVDNIINDISCMLKVSRRSLHILSTSKGLIAG 180
Query: 143 NLRYIEEDGTKVNCTCGATAVAVPSNIQGIRNLVTDAKFVLIVEKDATFQRLLDDNFCNK 202
NLRYIEEDGTKVNCTCGATAVAVPSNIQGIRNLVTDAKFVLIVEKDATFQRLLDDNFCNK
Sbjct: 181 NLRYIEEDGTKVNCTCGATAVAVPSNIQGIRNLVTDAKFVLIVEKDATFQRLLDDNFCNK 240
Query: 203 LSPCIMITGKGVPDLNTRLLVKKLWDTFHVPVFTLVDADPHGIEIMCIYKYGSMSMSFEA 262
LSPCIMITGKGVPDLNTRLLVKKLWDTFHVPVFTLVDADPHGIEIMCIYKYGSMSMSFEA
Sbjct: 241 LSPCIMITGKGVPDLNTRLLVKKLWDTFHVPVFTLVDADPHGIEIMCIYKYGSMSMSFEA 300
Query: 263 HHLTVPAIRWLGLLPSDLKRLNVPKDSLIPLTKRDQMKLDSILRRPYVTCQPFWRKEMEI 322
HHLTVPAIRWLGLLPSDLKRLNVPKDSLIPLTKRDQMKLDSILRRPYVTCQPFWRKEMEI
Sbjct: 301 HHLTVPAIRWLGLLPSDLKRLNVPKDSLIPLTKRDQMKLDSILRRPYVTCQPFWRKEMEI 360
Query: 323 MADSKMKAEIQALTFLSSDYLSRVYLPNKLKFGGWI 358
MADSKMKAEIQALTFLSSDYLSRVYLPNKLKFGGWI
Sbjct: 361 MADSKMKAEIQALTFLSSDYLSRVYLPNKLKFGGWI 396
>gi|14270505 protocadherin gamma subfamily B, 5 isoform 2 precursor
[Homo sapiens]
Length = 818
Score = 32.3 bits (72), Expect = 0.67
Identities = 23/72 (31%), Positives = 42/72 (58%), Gaps = 4/72 (5%)
Query: 17 DRHRESLLAALRRGGREPPTGGSRLASRFEDSVGLQMVSHCTTRKIKSDSPKSAQKFSLI 76
D R+ LL A+R GG+ P + + L F DS+ +++ T R + SD P++ +F L+
Sbjct: 632 DAARQRLLVAVRDGGQPPLSATATLHLVFADSL-QEVLPDITDRPVPSD-PQAELQFYLV 689
Query: 77 --LKILSMIYKL 86
L ++S+++ L
Sbjct: 690 VALALISVLFLL 701
>gi|11128031 protocadherin gamma subfamily B, 5 isoform 1 precursor
[Homo sapiens]
Length = 923
Score = 32.3 bits (72), Expect = 0.67
Identities = 23/72 (31%), Positives = 42/72 (58%), Gaps = 4/72 (5%)
Query: 17 DRHRESLLAALRRGGREPPTGGSRLASRFEDSVGLQMVSHCTTRKIKSDSPKSAQKFSLI 76
D R+ LL A+R GG+ P + + L F DS+ +++ T R + SD P++ +F L+
Sbjct: 632 DAARQRLLVAVRDGGQPPLSATATLHLVFADSL-QEVLPDITDRPVPSD-PQAELQFYLV 689
Query: 77 --LKILSMIYKL 86
L ++S+++ L
Sbjct: 690 VALALISVLFLL 701
>gi|13435366 desmocollin 2 isoform Dsc2b preproprotein [Homo
sapiens]
Length = 847
Score = 30.4 bits (67), Expect = 2.6
Identities = 33/108 (30%), Positives = 45/108 (41%), Gaps = 7/108 (6%)
Query: 92 YATKRDIYYTDSQLFGNQTVVDNIIN--DISCMLKVSRRSLHILSTSKGLI-AGNLRYIE 148
Y K + D Q FG QT IIN D++ L R+ ++ S + + LR
Sbjct: 319 YQLKIKVQDMDGQYFGLQTTSTCIINIDDVNDHLPTFTRTSYVTSVEENTVDVEILRVTV 378
Query: 149 EDGTKVN-CTCGATAVAVPSNIQGIRNLVTDAKF---VLIVEKDATFQ 192
ED VN A + N G +VTDAK VL V K ++
Sbjct: 379 EDKDLVNTANWRANYTILKGNENGNFKIVTDAKTNEGVLCVVKPLNYE 426
>gi|13435364 desmocollin 2 isoform Dsc2a preproprotein [Homo
sapiens]
Length = 901
Score = 30.4 bits (67), Expect = 2.6
Identities = 33/108 (30%), Positives = 45/108 (41%), Gaps = 7/108 (6%)
Query: 92 YATKRDIYYTDSQLFGNQTVVDNIIN--DISCMLKVSRRSLHILSTSKGLI-AGNLRYIE 148
Y K + D Q FG QT IIN D++ L R+ ++ S + + LR
Sbjct: 319 YQLKIKVQDMDGQYFGLQTTSTCIINIDDVNDHLPTFTRTSYVTSVEENTVDVEILRVTV 378
Query: 149 EDGTKVN-CTCGATAVAVPSNIQGIRNLVTDAKF---VLIVEKDATFQ 192
ED VN A + N G +VTDAK VL V K ++
Sbjct: 379 EDKDLVNTANWRANYTILKGNENGNFKIVTDAKTNEGVLCVVKPLNYE 426
>gi|11128035 protocadherin gamma subfamily B, 2 isoform 1 precursor
[Homo sapiens]
Length = 931
Score = 29.3 bits (64), Expect = 5.7
Identities = 22/72 (30%), Positives = 42/72 (58%), Gaps = 4/72 (5%)
Query: 17 DRHRESLLAALRRGGREPPTGGSRLASRFEDSVGLQMVSHCTTRKIKSDSPKSAQKFSLI 76
D R+ LL A+R GG+ P + + L F DS+ +++ + R+ SD P++ +F L+
Sbjct: 636 DAARQRLLVAVRDGGQPPLSATATLHLIFADSL-QEVLPDLSDRREPSD-PQAKLQFYLV 693
Query: 77 --LKILSMIYKL 86
L ++S+++ L
Sbjct: 694 VALALISVLFFL 705
>gi|14270490 protocadherin gamma subfamily B, 1 isoform 2 precursor
[Homo sapiens]
Length = 810
Score = 29.3 bits (64), Expect = 5.7
Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
Query: 17 DRHRESLLAALRRGGREPPTGGSRLASRFEDSVGLQMVSHCTTRKIKSDSPKSAQKFSLI 76
D R+ LL A+R GG+ P + + L F DS LQ V + + + P++ +F L+
Sbjct: 632 DAARQRLLVAVRDGGQPPLSATATLHLIFADS--LQEVLPDLSDRPEPSDPQTELQFYLV 689
Query: 77 --LKILSMIYKL 86
L ++S+++ L
Sbjct: 690 VALALISVLFLL 701
>gi|11128029 protocadherin gamma subfamily B, 6 isoform 1 precursor
[Homo sapiens]
Length = 930
Score = 29.3 bits (64), Expect = 5.7
Identities = 21/72 (29%), Positives = 42/72 (58%), Gaps = 4/72 (5%)
Query: 17 DRHRESLLAALRRGGREPPTGGSRLASRFEDSVGLQMVSHCTTRKIKSDSPKSAQKFSLI 76
D R+ LL A+R GG+ P + + L F D++ +++ + R + SD P++ +F L+
Sbjct: 636 DAARQRLLVAVRDGGQPPLSATATLHLVFADNL-QEILPDLSDRPVLSD-PQAELQFYLV 693
Query: 77 --LKILSMIYKL 86
L ++S+++ L
Sbjct: 694 VALALISVLFLL 705
>gi|14270502 protocadherin gamma subfamily B, 6 isoform 2 precursor
[Homo sapiens]
Length = 820
Score = 29.3 bits (64), Expect = 5.7
Identities = 21/72 (29%), Positives = 42/72 (58%), Gaps = 4/72 (5%)
Query: 17 DRHRESLLAALRRGGREPPTGGSRLASRFEDSVGLQMVSHCTTRKIKSDSPKSAQKFSLI 76
D R+ LL A+R GG+ P + + L F D++ +++ + R + SD P++ +F L+
Sbjct: 636 DAARQRLLVAVRDGGQPPLSATATLHLVFADNL-QEILPDLSDRPVLSD-PQAELQFYLV 693
Query: 77 --LKILSMIYKL 86
L ++S+++ L
Sbjct: 694 VALALISVLFLL 705
>gi|11128037 protocadherin gamma subfamily B, 1 isoform 1 precursor
[Homo sapiens]
Length = 927
Score = 29.3 bits (64), Expect = 5.7
Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
Query: 17 DRHRESLLAALRRGGREPPTGGSRLASRFEDSVGLQMVSHCTTRKIKSDSPKSAQKFSLI 76
D R+ LL A+R GG+ P + + L F DS LQ V + + + P++ +F L+
Sbjct: 632 DAARQRLLVAVRDGGQPPLSATATLHLIFADS--LQEVLPDLSDRPEPSDPQTELQFYLV 689
Query: 77 --LKILSMIYKL 86
L ++S+++ L
Sbjct: 690 VALALISVLFLL 701
>gi|14270493 protocadherin gamma subfamily B, 2 isoform 2 precursor
[Homo sapiens]
Length = 811
Score = 29.3 bits (64), Expect = 5.7
Identities = 22/72 (30%), Positives = 42/72 (58%), Gaps = 4/72 (5%)
Query: 17 DRHRESLLAALRRGGREPPTGGSRLASRFEDSVGLQMVSHCTTRKIKSDSPKSAQKFSLI 76
D R+ LL A+R GG+ P + + L F DS+ +++ + R+ SD P++ +F L+
Sbjct: 636 DAARQRLLVAVRDGGQPPLSATATLHLIFADSL-QEVLPDLSDRREPSD-PQAKLQFYLV 693
Query: 77 --LKILSMIYKL 86
L ++S+++ L
Sbjct: 694 VALALISVLFFL 705
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.323 0.137 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,585,350
Number of Sequences: 37866
Number of extensions: 519311
Number of successful extensions: 1014
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1011
Number of HSP's gapped (non-prelim): 13
length of query: 358
length of database: 18,247,518
effective HSP length: 103
effective length of query: 255
effective length of database: 14,347,320
effective search space: 3658566600
effective search space used: 3658566600
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.