Search of human proteins with 37704384

Search of human proteins with 37704384

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|37704384 defensin, beta 119 isoform b [Homo sapiens]
         (43 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|37704384 defensin, beta 119 isoform b [Homo sapiens]                90   4e-19
gi|37704382 defensin, beta 119 isoform a precursor [Homo sapiens]      41   2e-04
gi|23503329 defensin, beta 119 isoform c precursor [Homo sapiens]      40   3e-04
gi|45387951 transmembrane protein 108 [Homo sapiens]                   26   7.9  
gi|210147493 transmembrane protein 108 [Homo sapiens]                  26   7.9  

>gi|37704384 defensin, beta 119 isoform b [Homo sapiens]
          Length = 43

 Score = 89.7 bits (221), Expect = 4e-19
 Identities = 43/43 (100%), Positives = 43/43 (100%)

Query: 1  MKLLYLFLAILLAIEEPVISALVRTVGCCLDTARQTPHPSMHG 43
          MKLLYLFLAILLAIEEPVISALVRTVGCCLDTARQTPHPSMHG
Sbjct: 1  MKLLYLFLAILLAIEEPVISALVRTVGCCLDTARQTPHPSMHG 43


>gi|37704382 defensin, beta 119 isoform a precursor [Homo sapiens]
          Length = 84

 Score = 40.8 bits (94), Expect = 2e-04
 Identities = 21/28 (75%), Positives = 22/28 (78%)

Query: 1  MKLLYLFLAILLAIEEPVISALVRTVGC 28
          MKLLYLFLAILLAIEEPVIS     + C
Sbjct: 1  MKLLYLFLAILLAIEEPVISGKRHILRC 28


>gi|23503329 defensin, beta 119 isoform c precursor [Homo sapiens]
          Length = 88

 Score = 40.4 bits (93), Expect = 3e-04
 Identities = 22/29 (75%), Positives = 22/29 (75%)

Query: 1  MKLLYLFLAILLAIEEPVISALVRTVGCC 29
          MKLLYLFLAILLAIEEPVIS      G C
Sbjct: 1  MKLLYLFLAILLAIEEPVISVECWMDGHC 29


>gi|45387951 transmembrane protein 108 [Homo sapiens]
          Length = 575

 Score = 25.8 bits (55), Expect = 7.9
 Identities = 10/30 (33%), Positives = 17/30 (56%)

Query: 10  ILLAIEEPVISALVRTVGCCLDTARQTPHP 39
           ++LAI  P+ S  V    CC+   ++T +P
Sbjct: 472 VILAISVPISSCSVLLTVCCMKRKKKTANP 501


>gi|210147493 transmembrane protein 108 [Homo sapiens]
          Length = 575

 Score = 25.8 bits (55), Expect = 7.9
 Identities = 10/30 (33%), Positives = 17/30 (56%)

Query: 10  ILLAIEEPVISALVRTVGCCLDTARQTPHP 39
           ++LAI  P+ S  V    CC+   ++T +P
Sbjct: 472 VILAISVPISSCSVLLTVCCMKRKKKTANP 501


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.330    0.142    0.434 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,472,499
Number of Sequences: 37866
Number of extensions: 31904
Number of successful extensions: 84
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 79
Number of HSP's gapped (non-prelim): 5
length of query: 43
length of database: 18,247,518
effective HSP length: 17
effective length of query: 26
effective length of database: 17,603,796
effective search space: 457698696
effective search space used: 457698696
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.