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Search of human proteins with 34577075
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|34577075 peroxisomal acyl-CoA thioesterase 1 isoform a [Homo
sapiens]
(319 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|34577075 peroxisomal acyl-CoA thioesterase 1 isoform a [Homo ... 668 0.0
gi|57529131 AVL9 homolog (S. cerevisiase) [Homo sapiens] 39 0.006
gi|219282747 KIAA1772 [Homo sapiens] 35 0.12
gi|154800453 tastin isoform 1 [Homo sapiens] 32 0.75
gi|154240738 RALY RNA binding protein-like isoform 2 [Homo sapiens] 31 1.7
gi|154240740 RALY RNA binding protein-like isoform 2 [Homo sapiens] 31 1.7
gi|154240712 RALY RNA binding protein-like isoform 2 [Homo sapiens] 31 1.7
gi|154240692 RALY RNA binding protein-like isoform 1 [Homo sapiens] 31 1.7
gi|239755949 PREDICTED: hypothetical protein [Homo sapiens] 30 2.2
gi|239750452 PREDICTED: hypothetical protein [Homo sapiens] 30 2.2
gi|239744754 PREDICTED: hypothetical protein XP_002343260 [Homo ... 30 3.7
gi|209977097 tripartite motif-containing 66 [Homo sapiens] 29 6.3
gi|60460897 butyrophilin-like 9 [Homo sapiens] 29 6.3
gi|50233787 nuclear protein in testis [Homo sapiens] 29 6.3
>gi|34577075 peroxisomal acyl-CoA thioesterase 1 isoform a [Homo
sapiens]
Length = 319
Score = 668 bits (1723), Expect = 0.0
Identities = 319/319 (100%), Positives = 319/319 (100%)
Query: 1 MSSPQAPEDGQGCGDRGDPPGDLRSVLVTTVLNLEPLDEDLFRGRHYWVPAKRLFGGQIV 60
MSSPQAPEDGQGCGDRGDPPGDLRSVLVTTVLNLEPLDEDLFRGRHYWVPAKRLFGGQIV
Sbjct: 1 MSSPQAPEDGQGCGDRGDPPGDLRSVLVTTVLNLEPLDEDLFRGRHYWVPAKRLFGGQIV 60
Query: 61 GQALVAAAKSVSEDVHVHSLHCYFVRAGDPKLPVLYQVERTRTGSSFSVRSVKAVQHGKP 120
GQALVAAAKSVSEDVHVHSLHCYFVRAGDPKLPVLYQVERTRTGSSFSVRSVKAVQHGKP
Sbjct: 61 GQALVAAAKSVSEDVHVHSLHCYFVRAGDPKLPVLYQVERTRTGSSFSVRSVKAVQHGKP 120
Query: 121 IFICQASFQQAQPSPMQHQFSMPTVPPPEELLDCETLIDQYLRDPNLQKRYPLALNRIAA 180
IFICQASFQQAQPSPMQHQFSMPTVPPPEELLDCETLIDQYLRDPNLQKRYPLALNRIAA
Sbjct: 121 IFICQASFQQAQPSPMQHQFSMPTVPPPEELLDCETLIDQYLRDPNLQKRYPLALNRIAA 180
Query: 181 QEVPIEIKPVNPSPLSQLQRMEPKQMFWVRARGYIGEGDMKMHCCVAAYISDYAFLGTAL 240
QEVPIEIKPVNPSPLSQLQRMEPKQMFWVRARGYIGEGDMKMHCCVAAYISDYAFLGTAL
Sbjct: 181 QEVPIEIKPVNPSPLSQLQRMEPKQMFWVRARGYIGEGDMKMHCCVAAYISDYAFLGTAL 240
Query: 241 LPHQWQHKVHFMVSLDHSMWFHAPFRADHWMLYECESPWAGGSRGLVHGRLWRQDGVLAV 300
LPHQWQHKVHFMVSLDHSMWFHAPFRADHWMLYECESPWAGGSRGLVHGRLWRQDGVLAV
Sbjct: 241 LPHQWQHKVHFMVSLDHSMWFHAPFRADHWMLYECESPWAGGSRGLVHGRLWRQDGVLAV 300
Query: 301 TCAQEGVIRVKPQVSESKL 319
TCAQEGVIRVKPQVSESKL
Sbjct: 301 TCAQEGVIRVKPQVSESKL 319
>gi|57529131 AVL9 homolog (S. cerevisiase) [Homo sapiens]
Length = 648
Score = 38.9 bits (89), Expect = 0.006
Identities = 29/99 (29%), Positives = 42/99 (42%), Gaps = 12/99 (12%)
Query: 108 SVRSVKAVQHGK--------PIFICQASFQQAQPSPMQHQFSMPTVPPPEEL-LDCETLI 158
++R V A HG+ P+F + S + +P+ P+ P P+ D ETL
Sbjct: 276 TIRKVMAGNHGEDAAMKTEEPLFQVEDSSKGQEPNDTNQYLKPPSRPSPDSSESDWETLD 335
Query: 159 DQYLRDPNLQKRYPLA---LNRIAAQEVPIEIKPVNPSP 194
L DPNL++R L N VP E P+ P
Sbjct: 336 PSVLEDPNLKEREQLGSDQTNLFPKDSVPSESLPITVQP 374
>gi|219282747 KIAA1772 [Homo sapiens]
Length = 1923
Score = 34.7 bits (78), Expect = 0.12
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Query: 128 FQQAQPSPMQHQFSMPTVPPPEELLDCETLIDQYLRDPNLQKRYPLALNRIAAQEVPIEI 187
F Q P QH FS V P E LD + L+++Y ++ +L L +N + E E+
Sbjct: 37 FSQLYLDPDQHPFSSADVKPKVEDLD-KDLVNRYTQNGSLDFSNNLTVNEMEDDEDDEEM 95
Query: 188 KPVNPSPLSQLQRMEPK 204
N P+ Q+ P+
Sbjct: 96 SDSNSPPIPYSQKPAPE 112
>gi|154800453 tastin isoform 1 [Homo sapiens]
Length = 778
Score = 32.0 bits (71), Expect = 0.75
Identities = 24/87 (27%), Positives = 35/87 (40%), Gaps = 9/87 (10%)
Query: 118 GKPIFICQASFQQAQPSPMQHQFSMPTVPPPEELLDCETLIDQYLRDPNLQKRYPLALNR 177
G P C++ + +PS +Q Q +P PP E E+ P ++ L
Sbjct: 521 GPPEAFCRSEPEIPEPS-LQEQLEVPEPYPPAEPRPLESCCRSEPEIPESSRQEQL---- 575
Query: 178 IAAQEVPIEIKPVNPSPLSQLQRMEPK 204
EVP P P PL R+EP+
Sbjct: 576 ----EVPEPCPPAEPRPLESYCRIEPE 598
>gi|154240738 RALY RNA binding protein-like isoform 2 [Homo sapiens]
Length = 291
Score = 30.8 bits (68), Expect = 1.7
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 172 PLALNRIAAQEVPIEIKPVNPSPLSQLQRMEPKQMFWVRARGYIGEGD 219
PL +N +A + P KP N PLS L R+E K+ F + GY+ + D
Sbjct: 84 PLDIN-MAGEPKPYRPKPGNKRPLSALYRLESKEPF-LSVGGYVFDYD 129
>gi|154240740 RALY RNA binding protein-like isoform 2 [Homo sapiens]
Length = 291
Score = 30.8 bits (68), Expect = 1.7
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 172 PLALNRIAAQEVPIEIKPVNPSPLSQLQRMEPKQMFWVRARGYIGEGD 219
PL +N +A + P KP N PLS L R+E K+ F + GY+ + D
Sbjct: 84 PLDIN-MAGEPKPYRPKPGNKRPLSALYRLESKEPF-LSVGGYVFDYD 129
>gi|154240712 RALY RNA binding protein-like isoform 2 [Homo sapiens]
Length = 291
Score = 30.8 bits (68), Expect = 1.7
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 172 PLALNRIAAQEVPIEIKPVNPSPLSQLQRMEPKQMFWVRARGYIGEGD 219
PL +N +A + P KP N PLS L R+E K+ F + GY+ + D
Sbjct: 84 PLDIN-MAGEPKPYRPKPGNKRPLSALYRLESKEPF-LSVGGYVFDYD 129
>gi|154240692 RALY RNA binding protein-like isoform 1 [Homo sapiens]
Length = 304
Score = 30.8 bits (68), Expect = 1.7
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 172 PLALNRIAAQEVPIEIKPVNPSPLSQLQRMEPKQMFWVRARGYIGEGD 219
PL +N +A + P KP N PLS L R+E K+ F + GY+ + D
Sbjct: 97 PLDIN-MAGEPKPYRPKPGNKRPLSALYRLESKEPF-LSVGGYVFDYD 142
>gi|239755949 PREDICTED: hypothetical protein [Homo sapiens]
Length = 524
Score = 30.4 bits (67), Expect = 2.2
Identities = 35/136 (25%), Positives = 49/136 (36%), Gaps = 17/136 (12%)
Query: 30 TVLNLEPLDEDLFRGRHYWVPAKRLFGGQIVGQALVAAAKSVSEDV-HVHSLHCYFVRAG 88
T + EP +E L GRH V G + G+A V + + H S +AG
Sbjct: 203 TAIEAEPPEEMLLIGRHGDVVQHAELGQAVDGEAAVVGHQGQWVSLQHQESQVSEGPQAG 262
Query: 89 DPKLPVLYQVERTRTGSSFSVRSVKAVQ------------HGKPIFICQASFQQAQPSPM 136
D L V VE G S + HG P+F+ + P+P
Sbjct: 263 DHALQVCQVVEAQVQGDEVGPGSTATLTVGVTETPPPTSLHGAPLFLAKPLI----PTPP 318
Query: 137 QHQFSMPTVPPPEELL 152
+ S PP +LL
Sbjct: 319 ALEISGGLYPPGTDLL 334
>gi|239750452 PREDICTED: hypothetical protein [Homo sapiens]
Length = 524
Score = 30.4 bits (67), Expect = 2.2
Identities = 35/136 (25%), Positives = 49/136 (36%), Gaps = 17/136 (12%)
Query: 30 TVLNLEPLDEDLFRGRHYWVPAKRLFGGQIVGQALVAAAKSVSEDV-HVHSLHCYFVRAG 88
T + EP +E L GRH V G + G+A V + + H S +AG
Sbjct: 203 TAIEAEPPEEMLLIGRHGDVVQHAELGQAVDGEAAVVGHQGQWVSLQHQESQVSEGPQAG 262
Query: 89 DPKLPVLYQVERTRTGSSFSVRSVKAVQ------------HGKPIFICQASFQQAQPSPM 136
D L V VE G S + HG P+F+ + P+P
Sbjct: 263 DHALQVCQVVEAQVQGDEVGPGSTATLTVGVTETPPPTSLHGAPLFLAKPLI----PTPP 318
Query: 137 QHQFSMPTVPPPEELL 152
+ S PP +LL
Sbjct: 319 ALEISGGLYPPGTDLL 334
>gi|239744754 PREDICTED: hypothetical protein XP_002343260 [Homo
sapiens]
Length = 519
Score = 29.6 bits (65), Expect = 3.7
Identities = 35/136 (25%), Positives = 49/136 (36%), Gaps = 17/136 (12%)
Query: 30 TVLNLEPLDEDLFRGRHYWVPAKRLFGGQIVGQALVAAAKSVSEDV-HVHSLHCYFVRAG 88
T + EP +E L GRH V G + G+A V + + H S +AG
Sbjct: 198 TAIEAEPPEEMLLIGRHGDVVQHAELGQAVDGEAAVVGHQGQWVSLQHQESQVPEGPQAG 257
Query: 89 DPKLPVLYQVERTRTGSSFSVRSVKAVQ------------HGKPIFICQASFQQAQPSPM 136
D L V VE G S + HG P+F+ + P+P
Sbjct: 258 DHALQVCQVVEAQVQGDEVGPGSTATLTVGVTETPPPTSLHGAPLFLAKPLI----PTPP 313
Query: 137 QHQFSMPTVPPPEELL 152
+ S PP +LL
Sbjct: 314 ALEISGGLYPPGTDLL 329
>gi|209977097 tripartite motif-containing 66 [Homo sapiens]
Length = 1216
Score = 28.9 bits (63), Expect = 6.3
Identities = 23/98 (23%), Positives = 40/98 (40%), Gaps = 8/98 (8%)
Query: 106 SFSVRSVKAVQHGKPIFICQASFQQAQPSPMQHQFSMPTVPPPEELLDCETLIDQYLRDP 165
S + K+ QH + + Q ++ QP+P+Q Q T+ +E + D
Sbjct: 531 SLQLSQTKSPQHLQQTIVGQINYIVRQPAPVQSQSQEETLQATDEPPASQGSKPALPLDK 590
Query: 166 NLQKRYPLALNRIAAQEVPIEIKPVNPSPLSQLQRMEP 203
N P A + +E P+ + PV+ S +Q P
Sbjct: 591 NTAAALPQA----SGEETPLSVPPVD----STIQHSSP 620
>gi|60460897 butyrophilin-like 9 [Homo sapiens]
Length = 535
Score = 28.9 bits (63), Expect = 6.3
Identities = 19/51 (37%), Positives = 22/51 (43%), Gaps = 9/51 (17%)
Query: 3 SPQAPEDGQGCGDRGDPPGDL-----RSVLVTTVLNLEPLDEDLFRGRHYW 48
S + EDG+ RG PPG R T L+LE GRHYW
Sbjct: 340 SLEVSEDGKSVSSRGAPPGPAPGHPQRFSEQTCALSLERFS----AGRHYW 386
>gi|50233787 nuclear protein in testis [Homo sapiens]
Length = 1132
Score = 28.9 bits (63), Expect = 6.3
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 180 AQEVPIEIKPVNPSPLSQLQRMEPKQMFWVRARGYIGEG 218
+QE P + P P P++QL + P + W G GEG
Sbjct: 151 SQEGPPGLPPQPPPPVAQLVPIVPLEKAWPGPHGTTGEG 189
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.137 0.440
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,184,750
Number of Sequences: 37866
Number of extensions: 674739
Number of successful extensions: 1593
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1588
Number of HSP's gapped (non-prelim): 14
length of query: 319
length of database: 18,247,518
effective HSP length: 102
effective length of query: 217
effective length of database: 14,385,186
effective search space: 3121585362
effective search space used: 3121585362
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.