Search of human proteins with 33695088

Search of human proteins with 33695088

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|33695088 glycerol-3-phosphate dehydrogenase 1 (soluble)
[Homo sapiens]
         (349 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|33695088 glycerol-3-phosphate dehydrogenase 1 (soluble) [Homo...   702   0.0  
gi|24307999 glycerol-3-phosphate dehydrogenase 1-like [Homo sapi...   524   e-149
gi|226442763 prenylcysteine oxidase 1 like [Homo sapiens]              34   0.22 
gi|94538366 transient receptor potential cation channel, subfami...    32   0.65 
gi|222537754 hypothetical protein LOC375337 [Homo sapiens]             28   9.4  
gi|4507031 solute carrier family 5 (sodium/glucose cotransporter...    28   9.4  

>gi|33695088 glycerol-3-phosphate dehydrogenase 1 (soluble) [Homo
           sapiens]
          Length = 349

 Score =  702 bits (1813), Expect = 0.0
 Identities = 349/349 (100%), Positives = 349/349 (100%)

Query: 1   MASKKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEEDIGGKKLTEIINTQHEN 60
           MASKKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEEDIGGKKLTEIINTQHEN
Sbjct: 1   MASKKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEEDIGGKKLTEIINTQHEN 60

Query: 61  VKYLPGHKLPPNVVAVPDVVQAAEDADILIFVVPHQFIGKICDQLKGHLKANATGISLIK 120
           VKYLPGHKLPPNVVAVPDVVQAAEDADILIFVVPHQFIGKICDQLKGHLKANATGISLIK
Sbjct: 61  VKYLPGHKLPPNVVAVPDVVQAAEDADILIFVVPHQFIGKICDQLKGHLKANATGISLIK 120

Query: 121 GVDEGPNGLKLISEVIGERLGIPMSVLMGANIASEVADEKFCETTIGCKDPAQGQLLKEL 180
           GVDEGPNGLKLISEVIGERLGIPMSVLMGANIASEVADEKFCETTIGCKDPAQGQLLKEL
Sbjct: 121 GVDEGPNGLKLISEVIGERLGIPMSVLMGANIASEVADEKFCETTIGCKDPAQGQLLKEL 180

Query: 181 MQTPNFRITVVQEVDTVEICGALKNVVAVGAGFCDGLGFGDNTKAAVIRLGLMEMIAFAK 240
           MQTPNFRITVVQEVDTVEICGALKNVVAVGAGFCDGLGFGDNTKAAVIRLGLMEMIAFAK
Sbjct: 181 MQTPNFRITVVQEVDTVEICGALKNVVAVGAGFCDGLGFGDNTKAAVIRLGLMEMIAFAK 240

Query: 241 LFCSGPVSSATFLESCGVADLITTCYGGRNRKVAEAFARTGKSIEQLEKELLNGQKLQGP 300
           LFCSGPVSSATFLESCGVADLITTCYGGRNRKVAEAFARTGKSIEQLEKELLNGQKLQGP
Sbjct: 241 LFCSGPVSSATFLESCGVADLITTCYGGRNRKVAEAFARTGKSIEQLEKELLNGQKLQGP 300

Query: 301 ETARELYSILQHKGLVDKFPLFMAVYKVCYEGQPVGEFIHCLQNHPEHM 349
           ETARELYSILQHKGLVDKFPLFMAVYKVCYEGQPVGEFIHCLQNHPEHM
Sbjct: 301 ETARELYSILQHKGLVDKFPLFMAVYKVCYEGQPVGEFIHCLQNHPEHM 349


>gi|24307999 glycerol-3-phosphate dehydrogenase 1-like [Homo
           sapiens]
          Length = 351

 Score =  524 bits (1350), Expect = e-149
 Identities = 249/347 (71%), Positives = 297/347 (85%)

Query: 2   ASKKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEEDIGGKKLTEIINTQHENV 61
           A  KVCIVGSGNWGSA+AKI+G N  +L +F   V MWVFEE + G+KLT+IIN  HENV
Sbjct: 4   APLKVCIVGSGNWGSAVAKIIGNNVKKLQKFASTVKMWVFEETVNGRKLTDIINNDHENV 63

Query: 62  KYLPGHKLPPNVVAVPDVVQAAEDADILIFVVPHQFIGKICDQLKGHLKANATGISLIKG 121
           KYLPGHKLP NVVA+ ++ +A +DAD+L+FV+PHQFI +ICD++ G +   A GI+LIKG
Sbjct: 64  KYLPGHKLPENVVAMSNLSEAVQDADLLVFVIPHQFIHRICDEITGRVPKKALGITLIKG 123

Query: 122 VDEGPNGLKLISEVIGERLGIPMSVLMGANIASEVADEKFCETTIGCKDPAQGQLLKELM 181
           +DEGP GLKLIS++I E++GI +SVLMGANIA+EVA EKFCETTIG K    G L KEL+
Sbjct: 124 IDEGPEGLKLISDIIREKMGIDISVLMGANIANEVAAEKFCETTIGSKVMENGLLFKELL 183

Query: 182 QTPNFRITVVQEVDTVEICGALKNVVAVGAGFCDGLGFGDNTKAAVIRLGLMEMIAFAKL 241
           QTPNFRITVV + DTVE+CGALKN+VAVGAGFCDGL  GDNTKAAVIRLGLMEMIAFA++
Sbjct: 184 QTPNFRITVVDDADTVELCGALKNIVAVGAGFCDGLRCGDNTKAAVIRLGLMEMIAFARI 243

Query: 242 FCSGPVSSATFLESCGVADLITTCYGGRNRKVAEAFARTGKSIEQLEKELLNGQKLQGPE 301
           FC G VS+ATFLESCGVADLITTCYGGRNR+VAEAFARTGK+IE+LEKE+LNGQKLQGP+
Sbjct: 244 FCKGQVSTATFLESCGVADLITTCYGGRNRRVAEAFARTGKTIEELEKEMLNGQKLQGPQ 303

Query: 302 TARELYSILQHKGLVDKFPLFMAVYKVCYEGQPVGEFIHCLQNHPEH 348
           T+ E+Y IL+ KGL+DKFPLF AVY++CYE +PV E + CLQ+HPEH
Sbjct: 304 TSAEVYRILKQKGLLDKFPLFTAVYQICYESRPVQEMLSCLQSHPEH 350


>gi|226442763 prenylcysteine oxidase 1 like [Homo sapiens]
          Length = 494

 Score = 33.9 bits (76), Expect = 0.22
 Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 7/55 (12%)

Query: 5  KVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEE-DIGGKKLTEIINTQH 58
          K+ +VG+G  GSA+A  +         F PRV + V+E+  +GG+  T  +N QH
Sbjct: 28 KIAVVGAGIGGSAVAHFL------QQHFGPRVQIDVYEKGTVGGRLATISVNKQH 76


>gi|94538366 transient receptor potential cation channel, subfamily
           M, member 1 [Homo sapiens]
          Length = 1603

 Score = 32.3 bits (72), Expect = 0.65
 Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 2/67 (2%)

Query: 122 VDEGPNGLKLISEVIGERLGIPMSVLMGANIASEVAD--EKFCETTIGCKDPAQGQLLKE 179
           V+ GPN + ++ E + E   IP+ +  G+  AS++     K+CE      +  + QLL  
Sbjct: 254 VEGGPNVVSIVLEYLQEEPPIPVVICDGSGRASDILSFAHKYCEEGGIINESLREQLLVT 313

Query: 180 LMQTPNF 186
           + +T N+
Sbjct: 314 IQKTFNY 320


>gi|222537754 hypothetical protein LOC375337 [Homo sapiens]
          Length = 1692

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 21/90 (23%), Positives = 41/90 (45%), Gaps = 12/90 (13%)

Query: 165  TIGCKDPAQGQLLKELMQTPNF----------RITVVQEVDTVEICGALKNVVAVGAGFC 214
            ++GC  P +G L ++L+  P++           I +V    +++  G    ++ +    C
Sbjct: 1562 SLGCYPPLEGNLYRKLLLIPSYLSEIEMLLAIEIFMVSNASSIQSPGTSTQILQIVLKRC 1621

Query: 215  DG--LGFGDNTKAAVIRLGLMEMIAFAKLF 242
            +       D+ +AAV RL +   I+  KLF
Sbjct: 1622 EDNQSRSNDDYQAAVERLIMAARISDPKLF 1651


>gi|4507031 solute carrier family 5 (sodium/glucose cotransporter),
           member 1 [Homo sapiens]
          Length = 664

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 2/72 (2%)

Query: 112 NATGISLIKGVDEGPNGLKLISEVIGERLGIPMSVLMGANIASEVADE--KFCETTIGCK 169
           +A  +S +KG       LKL+   I    G+   +L    IA  V  E  K+C T +GC 
Sbjct: 303 SAKNMSHVKGGCILCGYLKLMPMFIMVMPGMISRILYTEKIACVVPSECEKYCGTKVGCT 362

Query: 170 DPAQGQLLKELM 181
           + A   L+ ELM
Sbjct: 363 NIAYPTLVVELM 374


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.320    0.138    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,978,847
Number of Sequences: 37866
Number of extensions: 545550
Number of successful extensions: 1140
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1138
Number of HSP's gapped (non-prelim): 6
length of query: 349
length of database: 18,247,518
effective HSP length: 103
effective length of query: 246
effective length of database: 14,347,320
effective search space: 3529440720
effective search space used: 3529440720
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.