Guide to the Human Genome
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Name: SDS Sequence: fasta or formatted (328aa) NCBI GI: 33469958
Description:

serine dehydratase

Referenced in:

Amino Acid Catabolism

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.5         41           3
 C cysteine            1.8          6           1
 D aspartate           2.7          9           2
 E glutamate           6.1         20           1
 F phenylalanine       3.0         10           1
 G glycine             9.5         31           4
 H histidine           2.4          8           1
 I isoleucine          5.5         18           1
 K lysine              7.0         23           1
 L leucine            10.4         34           2
 M methionine          2.4          8           2
 N asparagine          2.1          7           2
 P proline             5.5         18           2
 Q glutamine           3.7         12           1
 R arginine            2.4          8           1
 S serine              6.4         21           2
 T threonine           4.6         15           2
 V valine              9.1         30           2
 W tryptophan          1.5          5           1
 Y tyrosine            1.2          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   serine dehydratase 
SDSL                  0.585   serine dehydratase-like 
SRR                   0.115   serine racemase 
NPY2R                 0.018   neuropeptide Y receptor Y2 
LOC100132369          0.013   PREDICTED: hypothetical protein 
LOC100132369          0.013   PREDICTED: hypothetical protein 
LOC100132369          0.013   PREDICTED: hypothetical protein 
NCAN                  0.011   chondroitin sulfate proteoglycan 3 
IRS1                  0.010   insulin receptor substrate 1 
CALCOCO2              0.008   calcium binding and coiled-coil domain 2 
POLR3E                0.008   polymerase (RNA) III (DNA directed) polypeptide E [Ho...
PTK6                  0.006   PTK6 protein tyrosine kinase 6 
ZFHX3                 0.006   AT-binding transcription factor 1 
PIGO                  0.006   phosphatidylinositol glycan anchor biosynthesis, cla...
OLIG2                 0.005   oligodendrocyte lineage transcription factor 2 [Homo...
ACAA2                 0.005   acetyl-coenzyme A acyltransferase 2 
DALRD3                0.005   DALR anticodon binding domain containing 3 isoform 2...
DALRD3                0.005   DALR anticodon binding domain containing 3 isoform 1...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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