Search of human proteins with 122937488

Search of human proteins with 122937488

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|122937488 hypothetical LOC646498 [Homo sapiens]
         (206 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|122937488 hypothetical LOC646498 [Homo sapiens]                    450   e-127
gi|193083150 hypothetical protein LOC346653 isoform b [Homo sapi...    30   1.4  
gi|124378039 SEC16 homolog A [Homo sapiens]                            29   3.2  
gi|118498339 EMI domain containing 2 [Homo sapiens]                    29   3.2  
gi|239757437 PREDICTED: hypothetical protein [Homo sapiens]            28   7.2  
gi|239751954 PREDICTED: hypothetical protein [Homo sapiens]            28   7.2  
gi|239746437 PREDICTED: hypothetical protein XP_002344221 [Homo ...    28   7.2  
gi|18105007 carbamoylphosphate synthetase 2/aspartate transcarba...    28   7.2  
gi|94681038 phospholipase D4 [Homo sapiens]                            27   9.4  
gi|122937420 plasma kallikrein-like protein 4 [Homo sapiens]           27   9.4  

>gi|122937488 hypothetical LOC646498 [Homo sapiens]
          Length = 206

 Score =  450 bits (1158), Expect = e-127
 Identities = 206/206 (100%), Positives = 206/206 (100%)

Query: 1   MPTSSCLSQNPKASSQPFHGCTDTYPWDRLYLSSLRCQIFPLQTGWKREPAQRHFFSKHD 60
           MPTSSCLSQNPKASSQPFHGCTDTYPWDRLYLSSLRCQIFPLQTGWKREPAQRHFFSKHD
Sbjct: 1   MPTSSCLSQNPKASSQPFHGCTDTYPWDRLYLSSLRCQIFPLQTGWKREPAQRHFFSKHD 60

Query: 61  NRTSFDKEGPYCLLQGIGRRKDLERLWQRHTFLRWAPCEIELRQQGPLESSYQADFRPGP 120
           NRTSFDKEGPYCLLQGIGRRKDLERLWQRHTFLRWAPCEIELRQQGPLESSYQADFRPGP
Sbjct: 61  NRTSFDKEGPYCLLQGIGRRKDLERLWQRHTFLRWAPCEIELRQQGPLESSYQADFRPGP 120

Query: 121 GLSGLPQHLIHFVQVQPSHTRTTYQQNFCCPSQGGHYGSYKVGPQAPVTDVLPDLPGIPR 180
           GLSGLPQHLIHFVQVQPSHTRTTYQQNFCCPSQGGHYGSYKVGPQAPVTDVLPDLPGIPR
Sbjct: 121 GLSGLPQHLIHFVQVQPSHTRTTYQQNFCCPSQGGHYGSYKVGPQAPVTDVLPDLPGIPR 180

Query: 181 PKLLQHYLHAGVSECLNWSRALNKDS 206
           PKLLQHYLHAGVSECLNWSRALNKDS
Sbjct: 181 PKLLQHYLHAGVSECLNWSRALNKDS 206


>gi|193083150 hypothetical protein LOC346653 isoform b [Homo
           sapiens]
          Length = 300

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 5/72 (6%)

Query: 118 PGPGL-----SGLPQHLIHFVQVQPSHTRTTYQQNFCCPSQGGHYGSYKVGPQAPVTDVL 172
           PGPG+     +GL   LIH  +         ++ NF   ++ G++     G    +  V 
Sbjct: 14  PGPGVELGVENGLLCQLIHSPEFNLFSNSVVFESNFIQVTKPGNWRDVCEGSATVILGVT 73

Query: 173 PDLPGIPRPKLL 184
             +P +P P +L
Sbjct: 74  SSVPSLPLPNVL 85


>gi|124378039 SEC16 homolog A [Homo sapiens]
          Length = 2357

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 8/77 (10%)

Query: 111  SYQADFRPGPGLS--GLPQHLIHFVQVQPSHTRTTYQQNFCCPSQGGHYGSYKVGPQAPV 168
            +Y+++F  GPG    G P   +     Q S +R T  + F  P     +G     P   +
Sbjct: 1407 TYRSNFSSGPGFPEYGYPADTVWPAMEQVS-SRPTSPEKFSVPHVCARFG-----PGGQL 1460

Query: 169  TDVLPDLPGIPRPKLLQ 185
              V+P+LP   +P L++
Sbjct: 1461 IKVIPNLPSEGQPALVE 1477


>gi|118498339 EMI domain containing 2 [Homo sapiens]
          Length = 439

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 2/71 (2%)

Query: 85  RLWQRHTFLRWAPCEIELRQQGPLESSYQADFRPGPGLSGLPQHLIHFVQVQPSHTRTTY 144
           R W  HT  R   C+++   +  ++  YQ+   PGP  + L + LI     + S+   T 
Sbjct: 53  RHWCHHTVTRTVSCQVQNGSETVVQRVYQSCRWPGP-CANLVRTLIR-PTYRVSYRTVTV 110

Query: 145 QQNFCCPSQGG 155
            +  CCP   G
Sbjct: 111 LEWRCCPGFTG 121


>gi|239757437 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 503

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 22/84 (26%), Positives = 31/84 (36%), Gaps = 23/84 (27%)

Query: 117 RPGPGLSGLPQH------------LIHFVQVQP-------SHTRTTYQQNFCCPSQGGHY 157
           RPGPGL  +P H            L+H + V P       +    T + +   P   GH+
Sbjct: 119 RPGPGLGPVPSHAPASHYTHLALQLLHLLHVLPALATVEVADAAGTAETHGAVPGSPGHW 178

Query: 158 GSYKVGPQAPVTDVLPDLPGIPRP 181
               +GP    T  L  +  I  P
Sbjct: 179 ----LGPAVMTTPQLDSVTNIQGP 198


>gi|239751954 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 503

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 22/84 (26%), Positives = 31/84 (36%), Gaps = 23/84 (27%)

Query: 117 RPGPGLSGLPQH------------LIHFVQVQP-------SHTRTTYQQNFCCPSQGGHY 157
           RPGPGL  +P H            L+H + V P       +    T + +   P   GH+
Sbjct: 119 RPGPGLGPVPSHAPASHYTHLALQLLHLLHVLPALATVEVADAAGTAETHGAVPGSPGHW 178

Query: 158 GSYKVGPQAPVTDVLPDLPGIPRP 181
               +GP    T  L  +  I  P
Sbjct: 179 ----LGPAVMTTPQLDSVTNIQGP 198


>gi|239746437 PREDICTED: hypothetical protein XP_002344221 [Homo
           sapiens]
          Length = 503

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 22/84 (26%), Positives = 31/84 (36%), Gaps = 23/84 (27%)

Query: 117 RPGPGLSGLPQH------------LIHFVQVQP-------SHTRTTYQQNFCCPSQGGHY 157
           RPGPGL  +P H            L+H + V P       +    T + +   P   GH+
Sbjct: 119 RPGPGLGPVPSHAPASHYTHLALQLLHLLHVLPALATVEVADAAGTAETHGAVPGSPGHW 178

Query: 158 GSYKVGPQAPVTDVLPDLPGIPRP 181
               +GP    T  L  +  I  P
Sbjct: 179 ----LGPAVMTTPQLDSVTNIQGP 198


>gi|18105007 carbamoylphosphate synthetase 2/aspartate
            transcarbamylase/dihydroorotase [Homo sapiens]
          Length = 2225

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 22/79 (27%), Positives = 32/79 (40%), Gaps = 10/79 (12%)

Query: 49   EPAQRHFFSKHDNRTSFDKEGPYC--LLQGIGRRKDLERLWQRHTFLRWAPCEIELRQQG 106
            E A  H F  HD+    ++ GP    +   +G R+D+E LW+       A  +       
Sbjct: 1637 EVAPHHLFLSHDD---LERLGPGKGEVRPELGSRQDVEALWE-----NMAVIDCFASDHA 1688

Query: 107  PLESSYQADFRPGPGLSGL 125
            P     +   RP PG  GL
Sbjct: 1689 PHTLEEKCGSRPPPGFPGL 1707


>gi|94681038 phospholipase D4 [Homo sapiens]
          Length = 506

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 11/25 (44%), Positives = 14/25 (56%)

Query: 81  KDLERLWQRHTFLRWAPCEIELRQQ 105
           KD+ R W+  +   W P E E RQQ
Sbjct: 66  KDVPRSWEHGSSPAWEPLEAEARQQ 90


>gi|122937420 plasma kallikrein-like protein 4 [Homo sapiens]
          Length = 395

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 21/55 (38%), Positives = 26/55 (47%), Gaps = 5/55 (9%)

Query: 117 RPGPGLSGLP--QHLIHFVQVQPSHTRTTYQQNFCCPSQGGHYGSYKVGPQAPVT 169
           R GP LS L   + LI F    P+ T T   Q     S+ GH GSY  G +  +T
Sbjct: 270 RAGPPLSSLHHWEKLISFSHHGPNATMT---QKTYSDSELGHVGSYLQGQRRTIT 321


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.321    0.138    0.463 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,279,400
Number of Sequences: 37866
Number of extensions: 525535
Number of successful extensions: 974
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 972
Number of HSP's gapped (non-prelim): 10
length of query: 206
length of database: 18,247,518
effective HSP length: 97
effective length of query: 109
effective length of database: 14,574,516
effective search space: 1588622244
effective search space used: 1588622244
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.