Search of human proteins with 32699050

Search of human proteins with 32699050

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|32699050 hypothetical protein LOC348110 [Homo sapiens]
         (226 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|32699050 hypothetical protein LOC348110 [Homo sapiens]             462   e-130
gi|169234949 CWF19-like 2, cell cycle control [Homo sapiens]           34   0.089
gi|148839346 seizure related 6 homolog isoform 2 [Homo sapiens]        33   0.15 
gi|148839280 seizure related 6 homolog isoform 1 [Homo sapiens]        33   0.15 
gi|56090582 immunity-related GTPase family, Q [Homo sapiens]           31   0.98 
gi|47578107 delangin isoform B [Homo sapiens]                          31   0.98 
gi|47578105 delangin isoform A [Homo sapiens]                          31   0.98 
gi|197333879 genetic suppressor element 1 isoform 2 [Homo sapiens]     30   2.2  
gi|44955926 genetic suppressor element 1 isoform 1 [Homo sapiens]      30   2.2  
gi|11321634 CD2-associated protein [Homo sapiens]                      29   3.7  
gi|55743151 WD repeat domain 19 [Homo sapiens]                         28   6.4  
gi|157743286 transmembrane protein 90A [Homo sapiens]                  28   6.4  
gi|122937297 serpin peptidase inhibitor, clade A (alpha-1 antipr...    28   8.3  

>gi|32699050 hypothetical protein LOC348110 [Homo sapiens]
          Length = 226

 Score =  462 bits (1189), Expect = e-130
 Identities = 226/226 (100%), Positives = 226/226 (100%)

Query: 1   MSRIYHDGALRNKAVQSVRLPGAWDPAAHQGGNGVLLEGELIDVSRHSILDTHGRKERYY 60
           MSRIYHDGALRNKAVQSVRLPGAWDPAAHQGGNGVLLEGELIDVSRHSILDTHGRKERYY
Sbjct: 1   MSRIYHDGALRNKAVQSVRLPGAWDPAAHQGGNGVLLEGELIDVSRHSILDTHGRKERYY 60

Query: 61  VLYIRPSHIHRRKFDAKGNEIEPNFSATRKVNTGFLMSSYKVEAKGDTDRLTPEALKGLV 120
           VLYIRPSHIHRRKFDAKGNEIEPNFSATRKVNTGFLMSSYKVEAKGDTDRLTPEALKGLV
Sbjct: 61  VLYIRPSHIHRRKFDAKGNEIEPNFSATRKVNTGFLMSSYKVEAKGDTDRLTPEALKGLV 120

Query: 121 NKPELLALTESLTPDHTVAFWMPESEMEVMELELGAGVRLKTRGDGPFLDSLAKLEAGTV 180
           NKPELLALTESLTPDHTVAFWMPESEMEVMELELGAGVRLKTRGDGPFLDSLAKLEAGTV
Sbjct: 121 NKPELLALTESLTPDHTVAFWMPESEMEVMELELGAGVRLKTRGDGPFLDSLAKLEAGTV 180

Query: 181 TKCNFTGDGKTGASWTDNIMAQKCSKGAAAEIREQGDGAEDEEWDD 226
           TKCNFTGDGKTGASWTDNIMAQKCSKGAAAEIREQGDGAEDEEWDD
Sbjct: 181 TKCNFTGDGKTGASWTDNIMAQKCSKGAAAEIREQGDGAEDEEWDD 226


>gi|169234949 CWF19-like 2, cell cycle control [Homo sapiens]
          Length = 894

 Score = 34.3 bits (77), Expect = 0.089
 Identities = 17/50 (34%), Positives = 26/50 (52%)

Query: 63  YIRPSHIHRRKFDAKGNEIEPNFSATRKVNTGFLMSSYKVEAKGDTDRLT 112
           ++RPS      F +KG + EP  S++  V  G L S ++   K   +RLT
Sbjct: 368 FLRPSDDEELSFHSKGRKFEPLSSSSALVAQGSLCSGFRKPTKNSEERLT 417


>gi|148839346 seizure related 6 homolog isoform 2 [Homo sapiens]
          Length = 993

 Score = 33.5 bits (75), Expect = 0.15
 Identities = 30/124 (24%), Positives = 45/124 (36%), Gaps = 15/124 (12%)

Query: 112 TPEALKGLVN---KPELLALTESLT-----PDHTVAFWMPESEMEVMELEL----GAGVR 159
           TP  L  L N   +P   + T ++      P      W PESE  ++ +      G  + 
Sbjct: 103 TPSPLPRLANQDSRPVFTSPTPAMAAVPTQPQSKEGPWSPESESPMLRITAPLPPGPSMA 162

Query: 160 LKTRGDGPFLDSLAKLEAGTVTKCNFTGDGKTGASWTDNIMAQKCSKGAAAEIREQGDGA 219
           + T G G    +     A T T+    G G  G  W   +++Q    G    I       
Sbjct: 163 VPTLGPGEIASTTPPSRAWTPTQ---EGPGDMGRPWVAEVVSQGAGIGIQGTITSSTASG 219

Query: 220 EDEE 223
           +DEE
Sbjct: 220 DDEE 223


>gi|148839280 seizure related 6 homolog isoform 1 [Homo sapiens]
          Length = 994

 Score = 33.5 bits (75), Expect = 0.15
 Identities = 30/124 (24%), Positives = 45/124 (36%), Gaps = 15/124 (12%)

Query: 112 TPEALKGLVN---KPELLALTESLT-----PDHTVAFWMPESEMEVMELEL----GAGVR 159
           TP  L  L N   +P   + T ++      P      W PESE  ++ +      G  + 
Sbjct: 103 TPSPLPRLANQDSRPVFTSPTPAMAAVPTQPQSKEGPWSPESESPMLRITAPLPPGPSMA 162

Query: 160 LKTRGDGPFLDSLAKLEAGTVTKCNFTGDGKTGASWTDNIMAQKCSKGAAAEIREQGDGA 219
           + T G G    +     A T T+    G G  G  W   +++Q    G    I       
Sbjct: 163 VPTLGPGEIASTTPPSRAWTPTQ---EGPGDMGRPWVAEVVSQGAGIGIQGTITSSTASG 219

Query: 220 EDEE 223
           +DEE
Sbjct: 220 DDEE 223


>gi|56090582 immunity-related GTPase family, Q [Homo sapiens]
          Length = 623

 Score = 30.8 bits (68), Expect = 0.98
 Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 5/79 (6%)

Query: 151 ELELGAGVRLKTRGDGPFLDSLAK----LEAGTVTKCNFTGDGKTGASWTDNIMAQKCSK 206
           ++E   G  LK  G G   ++L+K      AG+    +  G GK G+     ++  K S 
Sbjct: 345 KMENPKGESLKNAGGGGLENALSKGREKCSAGSQKAGSGEGPGKAGSEGLQQVVGMKKSG 404

Query: 207 GAAAEIREQGDGAEDEEWD 225
           G  +E R      EDE W+
Sbjct: 405 GGDSE-RAAALSPEDETWE 422


>gi|47578107 delangin isoform B [Homo sapiens]
          Length = 2697

 Score = 30.8 bits (68), Expect = 0.98
 Identities = 14/40 (35%), Positives = 24/40 (60%)

Query: 97  MSSYKVEAKGDTDRLTPEALKGLVNKPELLALTESLTPDH 136
           +S +K + K D+ RL  E  + L  +P+  +++ESL  DH
Sbjct: 779 VSKHKQDTKSDSPRLKSERAEALKQRPDGRSVSESLRRDH 818


>gi|47578105 delangin isoform A [Homo sapiens]
          Length = 2804

 Score = 30.8 bits (68), Expect = 0.98
 Identities = 14/40 (35%), Positives = 24/40 (60%)

Query: 97  MSSYKVEAKGDTDRLTPEALKGLVNKPELLALTESLTPDH 136
           +S +K + K D+ RL  E  + L  +P+  +++ESL  DH
Sbjct: 779 VSKHKQDTKSDSPRLKSERAEALKQRPDGRSVSESLRRDH 818


>gi|197333879 genetic suppressor element 1 isoform 2 [Homo sapiens]
          Length = 1113

 Score = 29.6 bits (65), Expect = 2.2
 Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 5/80 (6%)

Query: 83  PNFSATRKVNTGFLMSSYKVEAKGDTDRLTPEALKGLVNKPELLALTESLT----PDHTV 138
           PNF   +K  T F ++    E + D +RL  E L+ +  K    A+ +SLT        V
Sbjct: 754 PNFEEKKKFLTIFNLTHISAEKRKDKERLV-EMLRAMKQKALSAAVADSLTNSPRDSPAV 812

Query: 139 AFWMPESEMEVMELELGAGV 158
           +   P ++   +++E   GV
Sbjct: 813 SLSEPATQQASLDVEKPVGV 832


>gi|44955926 genetic suppressor element 1 isoform 1 [Homo sapiens]
          Length = 1217

 Score = 29.6 bits (65), Expect = 2.2
 Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 5/80 (6%)

Query: 83  PNFSATRKVNTGFLMSSYKVEAKGDTDRLTPEALKGLVNKPELLALTESLT----PDHTV 138
           PNF   +K  T F ++    E + D +RL  E L+ +  K    A+ +SLT        V
Sbjct: 858 PNFEEKKKFLTIFNLTHISAEKRKDKERLV-EMLRAMKQKALSAAVADSLTNSPRDSPAV 916

Query: 139 AFWMPESEMEVMELELGAGV 158
           +   P ++   +++E   GV
Sbjct: 917 SLSEPATQQASLDVEKPVGV 936


>gi|11321634 CD2-associated protein [Homo sapiens]
          Length = 639

 Score = 28.9 bits (63), Expect = 3.7
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 86  SATRKVNTGFLMSSYKVEAKGDTDRLTPEALKGL-VNKPELLALTESLTPDH 136
           S+  K NT   ++  +++AK +TD +   +L  L     ELL + E+L  DH
Sbjct: 553 SSASKANTTAFLTPLEIKAKVETDDVKKNSLDELRAQIIELLCIVEALKKDH 604


>gi|55743151 WD repeat domain 19 [Homo sapiens]
          Length = 1342

 Score = 28.1 bits (61), Expect = 6.4
 Identities = 12/45 (26%), Positives = 24/45 (53%)

Query: 103  EAKGDTDRLTPEALKGLVNKPELLALTESLTPDHTVAFWMPESEM 147
            E +   D    + ++G+V +P++  + E+ TP     F +PE E+
Sbjct: 1221 EYRSKIDAKYKKKIEGMVRRPDISEIEEATTPCPFCKFLLPECEL 1265


>gi|157743286 transmembrane protein 90A [Homo sapiens]
          Length = 238

 Score = 28.1 bits (61), Expect = 6.4
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 4/40 (10%)

Query: 186 TGDGKTGASWTDNIMAQKCSKGAAAEIREQGDGAEDEEWD 225
           TG G+      +N+  Q  S G   E+R+Q D  E+EE D
Sbjct: 106 TGPGQAA----ENVTIQTVSYGVQEELRDQEDDQEEEESD 141


>gi|122937297 serpin peptidase inhibitor, clade A (alpha-1
           antiproteinase, antitrypsin), member 11 [Homo sapiens]
          Length = 422

 Score = 27.7 bits (60), Expect = 8.3
 Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 3/67 (4%)

Query: 136 HTVAFWMPESEMEVMELELGAGVRLKTRGDGPFLDSLAKLEAGTVTKCNFTGDGKTGASW 195
           HT+A   P+ E++V    L    RLK R    +LDS+ +L        NFT    TG   
Sbjct: 124 HTLALPSPKLELKVGN-SLFLDKRLKPRQH--YLDSIKELYGAFAFSANFTDSVTTGRQI 180

Query: 196 TDNIMAQ 202
            D +  Q
Sbjct: 181 NDYLRRQ 187


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.314    0.133    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,152,402
Number of Sequences: 37866
Number of extensions: 404415
Number of successful extensions: 633
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 628
Number of HSP's gapped (non-prelim): 13
length of query: 226
length of database: 18,247,518
effective HSP length: 99
effective length of query: 127
effective length of database: 14,498,784
effective search space: 1841345568
effective search space used: 1841345568
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.